Rh4DG141100

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015393
Physical Location & Seq
Reverse (-)
27964804 .. 27966814
2011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG141100.1

Sequence Viewer

Length: 1032 bp
ATGACAAGAAACGAAAGAGTATTTGTGTTTCTTGTGGTCCTTCCACTTCTAGTGTCTCTGTGTTCGTCGGCGACCTTGGCTCCTTCTTCAAAACCACCACCACCACCACCAAAGCAAAACAAGTTGACCTGGCATTACTATAAAGTCACTAACACATGCCGCGATGCAGAAGCTTTCATCCAGCACCAGGTCAAGAAGTTTTGGGACCAGGATAAAAGCATCACCGCTAAGCTTCTCCGGTTGCTCTACTCTGACTGCTTCGTAACTGGTTGTGATGCATCAGTACTGCTGGATGGTCCAAACTCTGAGAAAACAGCACCACAGAATTGGGGACTGGGAGGTTTCTATTTCATCGACAACGTCAAAAAAGTTCTTGAACATTACTGCCCCGGTGCCGTCTCGTGTGCTGATATTCTCAACCTTGCCACCAGGGATGCTGTTCATTTGGCTGGTGCACCTTCTTATCCTGTTCTTACAGGCCGAAGGGACGGCCTAACATCAAGCAGATCATCAGTCGACCTTCCCTCACCCTCCATTTCATGGCAGGCTTCACTTGACTACTTCAAATCCAGAGGCTTGAATGTATTGGATATGACTACTCTACTAGGTTCACATTCAATGGGTAAAACACACTGTCGCTTCATTTTGGATCGGCTCTACAATTTTAATGGCACAAACAAGCCAGACCCAAGCATGGAACCCTCATTCTTATCCTCCATGAGAAAGTTATGCCCACCAAGAACTACAAAGGGACAGAGTGACCCGCTGGTGTACCTAAACCCCCAATCTGGGGCCAATTACAATTTTACACAATCCTACTACTCCAGAGTTTTATCCAAGAAAGCTGTGCTGGGAGTCGACCAGCAGCTACTGTTTGGTGGAGACACCAAGGATATCACCGATGAGTTTGCTGCTGGTTTTGAAGATTTTCGGAGGTCATATGCTTACTCAATGAGCAGAATGGGTGCTATCATGGTTTTGACAGGTAACCAGGGAGAGATACGCCGGAATTGCCGAGTTCCAAACCACTAA

Protein Analysis

343

Amino Acids

38.21

Weight (kDa)

9.12

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 61 - 305 3.6e-70 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43480 AT5G24070
fragaria_vesca FvH4_3g26850
malus_domestica MD04G1046400.v1.1
prunus_persica Prupe.1G199900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0407891
rosa_laevigata RLG00000008691
rosa_multiflora Rmu_co8108400.1_g000001 Rmu_sc0029075.1_g000001
rosa_roxburghii Rroxscaffold_5G00352430
rosa_rugosa Rorug04G0082000
rosa_samantha Rh4AG147100 Rh4BG144600 Rh4CG153900 Rh4DG141100
rosa_wichuraiana Rw4G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 540
AccI GTMKAC 2 cut(s) 516, 858
AccII CGCG 1 cut(s) 162
AciI CCGC 3 cut(s) 160, 225, 764
AclWI GGATC 1 cut(s) 657
AfaI GTAC 2 cut(s) 285, 773
AfiI CCNNNNNNNGG 6 cut(s) 187, 540, 694, 788, 789, 790
AgsI TTSAA 6 cut(s) 90, 377, 565, 580, 618, 923
AjnI CCWGG 5 cut(s) 128, 186, 207, 428, 990
AluBI AGCT 4 cut(s) 173, 232, 845, 868
AluI AGCT 4 cut(s) 173, 232, 845, 868
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 3 cut(s) 60, 403, 876
Alw44I GTGCAC 1 cut(s) 453
AlwI GGATC 1 cut(s) 657
AlwNI CAGNNNCTG 1 cut(s) 871
AoxI GGCC 3 cut(s) 478, 490, 792
ApaLI GTGCAC 1 cut(s) 453
ApeKI GCWGC 2 cut(s) 865, 911
Asp700I GAANNNNTTC 1 cut(s) 927
AspS9I GGNCC 4 cut(s) 37, 205, 296, 792
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 3 cut(s) 214, 519, 889
AvaII GGWCC 3 cut(s) 37, 205, 296
BaeGI GKGCMC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 392
BauI CACGAG 1 cut(s) 400
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 2 cut(s) 877, 898
BccI CCATC 1 cut(s) 287
BceAI ACGGC 2 cut(s) 380, 505
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BciT130I CCWGG 5 cut(s) 130, 188, 209, 430, 992
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 3 cut(s) 60, 403, 876
BfaI CTAG 2 cut(s) 50, 605
BisI GCNGC 3 cut(s) 160, 866, 912
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 3 cut(s) 161, 867, 913
BmcAI AGTACT 1 cut(s) 285
Bme1390I CCNGG 6 cut(s) 130, 188, 209, 390, 430, 992
Bme18I GGWCC 3 cut(s) 37, 205, 296
BmgT120I GGNCC 4 cut(s) 37, 205, 296, 792
BmiI GGNNCC 5 cut(s) 81, 206, 394, 699, 793
BmrFI CCNGG 6 cut(s) 130, 188, 209, 390, 430, 992
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 5 cut(s) 154, 228, 265, 287, 424
BmuI ACTGGG 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 808
Bpu1102I GCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 390
BsaJI CCNNGG 5 cut(s) 75, 388, 429, 888, 991
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 6 cut(s) 187, 540, 694, 788, 789, 790
Bse1I ACTGG 2 cut(s) 271, 339
BseBI CCWGG 5 cut(s) 130, 188, 209, 430, 992
BseDI CCNNGG 5 cut(s) 75, 388, 429, 888, 991
BseGI GGATG 3 cut(s) 177, 298, 439
BseLI CCNNNNNNNGG 6 cut(s) 187, 540, 694, 788, 789, 790
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 2 cut(s) 271, 339
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 2 cut(s) 877, 898
BseYI CCCAGC 1 cut(s) 850
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 3 cut(s) 480, 492, 794
BshNI GGYRCC 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 3 cut(s) 238, 390, 1006
BslFI GGGAC 4 cut(s) 218, 345, 500, 765
BslI CCNNNNNNNGG 6 cut(s) 187, 540, 694, 788, 789, 790
BsmAI GTCTC 3 cut(s) 60, 403, 876
BsmBI CGTCTC 1 cut(s) 403
BsmFI GGGAC 4 cut(s) 218, 345, 500, 765
BsnI GGCC 3 cut(s) 480, 492, 794
Bsp1286I GDGCHC 1 cut(s) 457
Bsp143I GATC 2 cut(s) 506, 649
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 3 cut(s) 160, 225, 764
BspANI GGCC 3 cut(s) 480, 492, 794
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 5 cut(s) 81, 206, 394, 699, 793
BspPI GGATC 1 cut(s) 657
BspT107I GGYRCC 1 cut(s) 392
BsrI ACTGG 2 cut(s) 271, 339
BssECI CCNNGG 5 cut(s) 75, 388, 429, 888, 991
BssMI GATC 2 cut(s) 506, 649
BssSI CACGAG 1 cut(s) 400
BssT1I CCWWGG 2 cut(s) 75, 888
Bst2BI CACGAG 1 cut(s) 400
Bst2UI CCWGG 5 cut(s) 130, 188, 209, 430, 992
Bst4CI ACNGT 2 cut(s) 635, 873
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 228, 306
BstEII GGTNACC 1 cut(s) 986
BstF5I GGATG 3 cut(s) 177, 298, 439
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 2 cut(s) 509, 652
BstMAI GTCTC 3 cut(s) 60, 403, 876
BstMBI GATC 2 cut(s) 506, 649
BstMWI GCNNNNNNNGC 2 cut(s) 77, 1011
BstNI CCWGG 5 cut(s) 130, 188, 209, 430, 992
BstNSI RCATGY 1 cut(s) 159
BstPI GGTNACC 1 cut(s) 986
BstSCI CCNGG 6 cut(s) 128, 186, 207, 388, 428, 990
BstSLI GKGCMC 1 cut(s) 457
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 877, 898
BstXI CCANNNNNNTGG 1 cut(s) 327
BsuRI GGCC 3 cut(s) 480, 492, 794
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 3 cut(s) 177, 298, 439
BtsIMutI CAGTG 1 cut(s) 631
Cac8I GCNNGC 1 cut(s) 546
CaiI CAGNNNCTG 1 cut(s) 871
Cfr13I GGNCC 4 cut(s) 37, 205, 296, 792
CsiI ACCWGGT 1 cut(s) 186
Csp6I GTAC 2 cut(s) 284, 772
CviAII CATG 5 cut(s) 156, 540, 694, 718, 973
CviQI GTAC 2 cut(s) 284, 772
DdeI CTNAG 2 cut(s) 228, 306
DpnI GATC 2 cut(s) 508, 651
DpnII GATC 2 cut(s) 506, 649
Eco130I CCWWGG 2 cut(s) 75, 888
Eco32I GATATC 1 cut(s) 895
Eco47I GGWCC 3 cut(s) 37, 205, 296
Eco91I GGTNACC 1 cut(s) 986
EcoO65I GGTNACC 1 cut(s) 986
EcoRII CCWGG 5 cut(s) 128, 186, 207, 428, 990
EcoRV GATATC 1 cut(s) 895
EcoT14I CCWWGG 2 cut(s) 75, 888
EcoT22I ATGCAT 1 cut(s) 280
ErhI CCWWGG 2 cut(s) 75, 888
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 5 cut(s) 159, 543, 697, 721, 976
FaqI GGGAC 4 cut(s) 218, 345, 500, 765
FatI CATG 5 cut(s) 155, 539, 693, 717, 972
FauI CCCGC 1 cut(s) 771
FauNDI CATATG 1 cut(s) 940
FblI GTMKAC 2 cut(s) 516, 858
Fnu4HI GCNGC 3 cut(s) 160, 866, 912
FokI GGATG 3 cut(s) 164, 305, 446
Fsp4HI GCNGC 3 cut(s) 160, 866, 912
FspBI CTAG 2 cut(s) 50, 605
GluI GCNGC 3 cut(s) 160, 866, 912
GsaI CCCAGC 1 cut(s) 854
GsuI CTGGAG 1 cut(s) 808
HaeIII GGCC 3 cut(s) 480, 492, 794
HapII CCGG 3 cut(s) 238, 390, 1006
Hin1II CATG 5 cut(s) 159, 543, 697, 721, 976
HincII GTYRAC 3 cut(s) 126, 517, 859
HindII GTYRAC 3 cut(s) 126, 517, 859
HindIII AAGCTT 2 cut(s) 171, 230
HinfI GANTC 1 cut(s) 855
HpaII CCGG 3 cut(s) 238, 390, 1006
HphI GGTGA 3 cut(s) 214, 519, 889
Hpy166II GTNNAC 6 cut(s) 126, 455, 517, 611, 772, 859
Hpy188I TCNGA 3 cut(s) 253, 307, 933
Hpy188III TCNNGA 4 cut(s) 193, 374, 570, 825
Hpy8I GTNNAC 6 cut(s) 126, 455, 517, 611, 772, 859
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 5 cut(s) 50, 93, 468, 477, 530
HpyCH4III ACNGT 2 cut(s) 635, 873
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 167, 278, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 1011
HpyF3I CTNAG 2 cut(s) 228, 306
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 5 cut(s) 159, 543, 697, 721, 976
Kzo9I GATC 2 cut(s) 506, 649
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 2 cut(s) 877, 898
LweI GCATC 5 cut(s) 154, 228, 265, 287, 424
MabI ACCWGGT 1 cut(s) 186
MaeI CTAG 2 cut(s) 50, 605
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 4 cut(s) 145, 262, 758, 986
MalI GATC 2 cut(s) 508, 651
MboI GATC 2 cut(s) 506, 649
MboII GAAGA 2 cut(s) 78, 935
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 5 cut(s) 325, 661, 796, 802, 1009
MlyI GAGTC 1 cut(s) 864
MnlI CCTC 7 cut(s) 332, 535, 541, 566, 712, 724, 927
Mph1103I ATGCAT 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 927
MseI TTAA 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 766
MspI CCGG 3 cut(s) 238, 390, 1006
MspR9I CCNGG 6 cut(s) 130, 188, 209, 390, 430, 992
MvaI CCWGG 5 cut(s) 130, 188, 209, 430, 992
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 77, 1011
NciI CCSGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 940
NdeII GATC 2 cut(s) 506, 649
NlaIII CATG 5 cut(s) 159, 543, 697, 721, 976
NlaIV GGNNCC 5 cut(s) 81, 206, 394, 699, 793
NmuCI GTSAC 2 cut(s) 145, 758
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 927
PflFI GACNNNGTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 540
PkrI GCNGC 3 cut(s) 161, 867, 913
PleI GAGTC 1 cut(s) 863
PpsI GAGTC 1 cut(s) 863
Psp6I CCWGG 5 cut(s) 128, 186, 207, 428, 990
PspEI GGTNACC 1 cut(s) 986
PspFI CCCAGC 1 cut(s) 850
PspGI CCWGG 5 cut(s) 128, 186, 207, 428, 990
PspN4I GGNNCC 5 cut(s) 81, 206, 394, 699, 793
PspPI GGNCC 4 cut(s) 37, 205, 296, 792
PstNI CAGNNNCTG 1 cut(s) 871
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 2 cut(s) 285, 773
RsaNI GTAC 2 cut(s) 284, 772
SalI GTCGAC 2 cut(s) 515, 857
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 3 cut(s) 160, 866, 912
Sau3AI GATC 2 cut(s) 506, 649
Sau96I GGNCC 4 cut(s) 37, 205, 296, 792
ScaI AGTACT 1 cut(s) 285
SchI GAGTC 1 cut(s) 864
ScrFI CCNGG 6 cut(s) 130, 188, 209, 390, 430, 992
SduI GDGCHC 1 cut(s) 457
SexAI ACCWGGT 1 cut(s) 186
SfaNI GCATC 5 cut(s) 154, 228, 265, 287, 424
SinI GGWCC 3 cut(s) 37, 205, 296
Sse9I AATT 5 cut(s) 325, 661, 796, 802, 1009
SsiI CCGC 3 cut(s) 160, 225, 764
SspMI CTAG 2 cut(s) 50, 605
StyD4I CCNGG 6 cut(s) 128, 186, 207, 388, 428, 990
StyI CCWWGG 2 cut(s) 75, 888
TaaI ACNGT 2 cut(s) 635, 873
TaiI ACGT 1 cut(s) 363
TaqI TCGA 3 cut(s) 354, 516, 858
TasI AATT 5 cut(s) 325, 661, 796, 802, 1009
TatI WGTACW 1 cut(s) 283
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TscAI CASTG 1 cut(s) 638
TseFI GTSAC 2 cut(s) 145, 758
TseI GCWGC 2 cut(s) 865, 911
Tsp45I GTSAC 2 cut(s) 145, 758
TspDTI ATGAA 5 cut(s) 166, 340, 431, 528, 631
TspRI CASTG 1 cut(s) 638
Tth111I GACNNNGTC 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 540
VneI GTGCAC 1 cut(s) 453
VpaK11BI GGWCC 3 cut(s) 37, 205, 296
XceI RCATGY 1 cut(s) 159
XmiI GTMKAC 2 cut(s) 516, 858
XmnI GAANNNNTTC 1 cut(s) 927
XspI CTAG 2 cut(s) 50, 605
ZrmI AGTACT 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.