AT2G43970

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012384
Physical Location & Seq
Reverse (-)
18205235 .. 18208218
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43970.2

Sequence Viewer

Length: 1638 bp
ATGGCTGATCAACAAACCCTAGATTCCTCTACTCCTCCTCCTACTCAATCCGATGATCTATCTCACTCCCACTCTACTTCCTCTACTACTTCAGCTTCTTCTTCCTCAGATCCATCACTCTTGAGGTCTCTCTCCTTAAGTCGACTCAACGCCGGAGCTCCTGAGTTCGTTCCTGGTCGAACTACTCCTCCGCTGCCTCAACCTCCGAGGATGATTATCCCGCCTCCTCCGCCGCACGGTATGCTTCATATGTATCACCACCAGCCTCCTTTCAATACTCCAGTTCTTGGTCCTGTTCCAATCCAGCCACACTTGGTTCCTGTTCAAAATCACCACCCTCATCATCGCTTTCATCAGCATCATCATCACAATCGTCATCAGAATCAGCAATATGTCCCGGTGAGGAATCACGGAGAGTATCAGCAGCGTGGTGGTGTCGGTGGTGAGCAGGAACCGGATTTGGTTTCAAAGAAGAATGATCGGAGAGATCATAGTAAGAGAGAATCTAAGAACGATCAAGTGACTGAAACTGGAGCTTCTGTTTCTATTGATTCAAAAACTGGTTTGCCTGAAGATTCTATCCAGAAGATTGTGAATCAGGTTGAATACTATTTCAGTGACTTGAACTTGGCTACTACAGATCATCTCATGAGATTCATTTGCAAGGATCCTGAAGGATATGTGCCTATTCATGTTGTTGCGTCGTTCAAGAAAATTAAAGCTGTCATTAACAATAATTCTCAGCTTGCCGCAGTGCTACAGAACTCAGCTAAGCTTTTTGTTAGTGAAGATGGAAAGAAAGTGAGACGCATAAGTCCGATTACTGAGTCGGCTATAGAAGAGCTTCAGTCTCGCATTATTGTTGCTGAGAATCTCCCTGAGGATCATTGCTACCAAAACCTGATGAAGATTTTTTCAACTGTTGGAAGTGTGAAGAACATCCGTACCTGCCAGCCTCAAAATAATGGAAGCGGTGCTCCACCCGCAGCGAGATCAGCAGCTAAAAGCGATGGTACGCTTTTCAGTAACAAGGTCCATGCTTTTGTTGAGTATGAGATTGTTGAGCTAGCCGAGAGAGCAGTTACCGAGTTAAGTGAAGCGGGAAATTGGAGGAGCGGTCTTAAAGTCCGGTTGATGCTAAAGCATCAGACGAAGGAACCAAAACAAGGTCAAGGGCGAGGAAGAAAAGGACATGATGCAGATGTAGAACATGAGGAAGATGATGCTACAACATCCGAGCAGCAGCCGATTGAGAAACAATCTGATGACTGTTCTGGGGAATGGGATACACATATGCAAGAGCAGCCAATAGGAGAGGATCAAGGGAATGAGAAAGCGGCTGGGCAGAGAAAAGGGCGTAACAGAGGTAGAGGAAAGGGACGAGGACGAGGGCAACCACACCAGAACCAAAACCAGAACAACAACCACAGCCATAACCAAAACCACAACCACAATGGGCGAGGAAATCATCATCATCATCATCATCATCAAGTGGGAACACAACCTTCGAACAATCCAATGAACAACATGGAGCAACCAGGCATGGGGAAACAGCAACCACCTGGACCACGAATGCCTGATGGGACCAGAGGATTCTCAATGGGACGGGGAAAGCCGGTTATGGTTCAGGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

545

Amino Acids

60.59

Weight (kDa)

7.9

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 197 - 255 3.6e-19 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43970 AT2G43970
fragaria_vesca FvH4_1g00200
malus_domestica MD00G1087300.v1.1 MD15G1143100.v1.1
prunus_persica Prupe.7G269900_v2.0.a1 Prupe.7G269900_v2.0.a1
pyrus_communis pycom15g12920 pycom290g00200
rosa_chinensis RchiOBHm_Chr2g0084471
rosa_laevigata RLG00000015621
rosa_multiflora Rmu_sc0009404.1_g000001
rosa_roxburghii Rroxscaffold_2G00156030
rosa_rugosa Rorug01G0454300
rosa_samantha Rh2AG002400 Rh2BG002000 Rh2CG002500 Rh2DG002500
rosa_wichuraiana Rw2G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 813
Acc36I ACCTGC 1 cut(s) 956
AccB7I CCANNNNNTGG 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 1116
AccI GTMKAC 1 cut(s) 142
AclWI GGATC 5 cut(s) 104, 662, 675, 891, 1326
AcuI CTGAAG 4 cut(s) 75, 591, 693, 830
AfaI GTAC 2 cut(s) 946, 1015
AfiI CCNNNNNNNGG 4 cut(s) 236, 287, 1166, 1544
AflII CTTAAG 1 cut(s) 136
AgsI TTSAA 8 cut(s) 274, 326, 468, 555, 605, 625, 709, 918
AjnI CCWGG 3 cut(s) 172, 1537, 1561
AloI GAACNNNNNNTCC 2 cut(s) 172, 204
Alw21I GWGCWC 2 cut(s) 160, 979
Alw26I GTCTC 3 cut(s) 132, 799, 855
AlwI GGATC 5 cut(s) 104, 662, 675, 891, 1326
ApeKI GCWGC 7 cut(s) 193, 424, 986, 998, 1240, 1243, 1303
Asp700I GAANNNNTTC 1 cut(s) 843
AspS9I GGNCC 4 cut(s) 290, 1033, 1565, 1584
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 4 cut(s) 248, 323, 412, 455
AsuII TTCGAA 1 cut(s) 1508
AsuNHI GCTAGC 1 cut(s) 1066
AvaII GGWCC 4 cut(s) 290, 1033, 1565, 1584
AxyI CCTNAGG 1 cut(s) 879
BaeI ACNNNNGTAYC 2 cut(s) 928, 961
BamHI GGATCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 2 cut(s) 160, 979
BbvI GCAGC 7 cut(s) 180, 436, 998, 1010, 1252, 1255, 1315
BccI CCATC 4 cut(s) 121, 785, 1004, 1574
BciT130I CCWGG 3 cut(s) 174, 1539, 1563
BciVI GTATCC 1 cut(s) 1279
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 3 cut(s) 132, 799, 855
BfaI CTAG 2 cut(s) 20, 1067
BfmI CTRYAG 3 cut(s) 636, 758, 834
BfrI CTTAAG 1 cut(s) 136
BfuAI ACCTGC 1 cut(s) 956
BfuI GTATCC 1 cut(s) 1279
BlpI GCTNAGC 1 cut(s) 771
Bme1390I CCNGG 4 cut(s) 174, 398, 1539, 1563
Bme18I GGWCC 4 cut(s) 290, 1033, 1565, 1584
BmgT120I GGNCC 4 cut(s) 290, 1033, 1565, 1584
BmiI GGNNCC 5 cut(s) 318, 453, 669, 1158, 1585
BmrFI CCNGG 4 cut(s) 174, 398, 1539, 1563
BmsI GCATC 5 cut(s) 367, 1125, 1153, 1186, 1213
BmtI GCTAGC 1 cut(s) 1070
BpmI CTGGAG 2 cut(s) 264, 552
Bpu1102I GCTNAGC 1 cut(s) 771
Bpu14I TTCGAA 1 cut(s) 1508
BpuEI CTTGAG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 206
BsaWI WCCGGW 2 cut(s) 454, 1128
BsaXI ACNNNNNCTCC 8 cut(s) 22, 52, 172, 202, 525, 555, 1102, 1132
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 287, 1166, 1544
Bse118I RCCGGY 1 cut(s) 1615
Bse1I ACTGG 3 cut(s) 281, 535, 565
Bse21I CCTNAGG 1 cut(s) 879
Bse3DI GCAATG 1 cut(s) 886
Bse8I GATNNNNATC 1 cut(s) 215
BseBI CCWGG 3 cut(s) 174, 1539, 1563
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 3 cut(s) 216, 939, 1232
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 4 cut(s) 236, 287, 1166, 1544
BseMI GCAATG 1 cut(s) 886
BseMII CTCAG 7 cut(s) 120, 153, 755, 780, 816, 858, 870
BseNI ACTGG 3 cut(s) 281, 535, 565
BseRI GAGGAG 5 cut(s) 24, 27, 177, 216, 1126
BseXI GCAGC 7 cut(s) 180, 436, 998, 1010, 1252, 1255, 1315
BseYI CCCAGC 1 cut(s) 1340
BsiHKAI GWGCWC 2 cut(s) 160, 979
BsiSI CCGG 5 cut(s) 153, 398, 455, 1129, 1616
BslFI GGGAC 4 cut(s) 380, 1392, 1597, 1617
BslI CCNNNNNNNGG 4 cut(s) 236, 287, 1166, 1544
BsmAI GTCTC 3 cut(s) 132, 799, 855
BsmBI CGTCTC 1 cut(s) 799
BsmFI GGGAC 4 cut(s) 380, 1392, 1597, 1617
BsmI GAATGC 1 cut(s) 1578
Bso31I GGTCTC 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 1508
Bsp1286I GDGCHC 2 cut(s) 160, 979
Bsp1720I GCTNAGC 1 cut(s) 771
BspCNI CTCAG 7 cut(s) 119, 154, 754, 779, 817, 859, 871
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 5 cut(s) 318, 453, 669, 1158, 1585
BspMI ACCTGC 1 cut(s) 956
BspOI GCTAGC 1 cut(s) 1070
BspPI GGATC 5 cut(s) 104, 662, 675, 891, 1326
BspQI GCTCTTC 1 cut(s) 834
BspT104I TTCGAA 1 cut(s) 1508
BspTI CTTAAG 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 132
BsrBI CCGCTC 1 cut(s) 1116
BsrDI GCAATG 1 cut(s) 886
BsrFI RCCGGY 1 cut(s) 1615
BsrI ACTGG 3 cut(s) 281, 535, 565
BssAI RCCGGY 1 cut(s) 1615
BssECI CCNNGG 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 174, 1539, 1563
Bst4CI ACNGT 3 cut(s) 239, 922, 1271
Bst6I CTCTTC 1 cut(s) 834
BstAFI CTTAAG 1 cut(s) 136
BstAPI GCANNNNNTGC 1 cut(s) 241
BstBI TTCGAA 1 cut(s) 1508
BstC8I GCNNGC 3 cut(s) 747, 953, 1068
BstDEI CTNAG 9 cut(s) 106, 162, 507, 741, 766, 771, 825, 867, 879
BstF5I GGATG 3 cut(s) 216, 939, 1232
BstMAI GTCTC 3 cut(s) 132, 799, 855
BstMWI GCNNNNNNNGC 6 cut(s) 229, 241, 983, 995, 1076, 1303
BstNI CCWGG 3 cut(s) 174, 1539, 1563
BstSCI CCNGG 4 cut(s) 172, 396, 1537, 1561
BstSFI CTRYAG 3 cut(s) 636, 758, 834
BstV1I GCAGC 7 cut(s) 180, 436, 998, 1010, 1252, 1255, 1315
BstX2I RGATCY 2 cut(s) 109, 667
BstYI RGATCY 2 cut(s) 109, 667
Bsu36I CCTNAGG 1 cut(s) 879
BsuI GTATCC 1 cut(s) 1279
BtgZI GCGATG 2 cut(s) 329, 1023
BtsCI GGATG 3 cut(s) 216, 939, 1232
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 2 cut(s) 622, 759
BveI ACCTGC 1 cut(s) 956
Cac8I GCNNGC 3 cut(s) 747, 953, 1068
CciI TCATGA 1 cut(s) 648
Cfr10I RCCGGY 1 cut(s) 1615
Cfr13I GGNCC 4 cut(s) 290, 1033, 1565, 1584
CseI GACGC 2 cut(s) 690, 816
Csp6I GTAC 2 cut(s) 945, 1014
CviAII CATG 7 cut(s) 649, 692, 1037, 1193, 1211, 1528, 1543
CviQI GTAC 2 cut(s) 945, 1014
DdeI CTNAG 9 cut(s) 106, 162, 507, 741, 766, 771, 825, 867, 879
DrdI GACNNNNNNGTC 1 cut(s) 813
DseDI GACNNNNNNGTC 1 cut(s) 813
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
EciI GGCGGA 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 132
Eco47I GGWCC 4 cut(s) 290, 1033, 1565, 1584
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 4 cut(s) 75, 591, 693, 830
Eco81I CCTNAGG 1 cut(s) 879
EcoICRI GAGCTC 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 172, 1537, 1561
EcoT38I GRGCYC 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 799
FaeI CATG 7 cut(s) 652, 695, 1040, 1196, 1214, 1531, 1546
FaqI GGGAC 4 cut(s) 380, 1392, 1597, 1617
FatI CATG 7 cut(s) 648, 691, 1036, 1192, 1210, 1527, 1542
FauI CCCGC 3 cut(s) 228, 991, 1093
FauNDI CATATG 2 cut(s) 249, 1293
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 142
FokI GGATG 3 cut(s) 223, 926, 1219
FriOI GRGCYC 1 cut(s) 160
FspBI CTAG 2 cut(s) 20, 1067
GsaI CCCAGC 1 cut(s) 1344
GsuI CTGGAG 2 cut(s) 264, 552
HapII CCGG 5 cut(s) 153, 398, 455, 1129, 1616
HgaI GACGC 2 cut(s) 690, 816
Hin1II CATG 7 cut(s) 652, 695, 1040, 1196, 1214, 1531, 1546
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 773
HpaII CCGG 5 cut(s) 153, 398, 455, 1129, 1616
HphI GGTGA 4 cut(s) 248, 323, 412, 455
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 9 cut(s) 52, 109, 207, 381, 483, 819, 1149, 1237, 1264
Hpy188III TCNNGA 6 cut(s) 121, 161, 583, 649, 671, 709
Hpy8I GTNNAC 1 cut(s) 143
Hpy99I CGWCG 1 cut(s) 706
HpyAV CCTTC 3 cut(s) 668, 1147, 1515
HpyCH4III ACNGT 3 cut(s) 239, 922, 1271
HpyCH4V TGCA 3 cut(s) 663, 1199, 1297
HpyF10VI GCNNNNNNNGC 6 cut(s) 229, 241, 983, 995, 1076, 1303
HpyF3I CTNAG 9 cut(s) 106, 162, 507, 741, 766, 771, 825, 867, 879
Hsp92II CATG 7 cut(s) 652, 695, 1040, 1196, 1214, 1531, 1546
Ksp22I TGATCA 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 6 cut(s) 155, 163, 533, 982, 1113, 1531
Lsp1109I GCAGC 7 cut(s) 180, 436, 998, 1010, 1252, 1255, 1315
LweI GCATC 5 cut(s) 367, 1125, 1153, 1186, 1213
MaeI CTAG 2 cut(s) 20, 1067
MaeIII GTNAC 5 cut(s) 520, 617, 1025, 1081, 1358
MbiI CCGCTC 1 cut(s) 1116
MflI RGATCY 2 cut(s) 109, 667
MhlI GDGCHC 2 cut(s) 160, 979
MluCI AATT 3 cut(s) 714, 736, 1105
MlyI GAGTC 2 cut(s) 138, 836
MmeI TCCRAC 1 cut(s) 904
MroXI GAANNNNTTC 1 cut(s) 843
MseI TTAA 5 cut(s) 137, 717, 729, 1091, 1122
MspA1I CMGCKG 1 cut(s) 193
MspCI CTTAAG 1 cut(s) 136
MspI CCGG 5 cut(s) 153, 398, 455, 1129, 1616
MspR9I CCNGG 4 cut(s) 174, 398, 1539, 1563
Mva1269I GAATGC 1 cut(s) 1578
MvaI CCWGG 3 cut(s) 174, 1539, 1563
MwoI GCNNNNNNNGC 6 cut(s) 229, 241, 983, 995, 1076, 1303
NciI CCSGG 1 cut(s) 398
NdeI CATATG 2 cut(s) 249, 1293
NheI GCTAGC 1 cut(s) 1066
NlaIII CATG 7 cut(s) 652, 695, 1040, 1196, 1214, 1531, 1546
NlaIV GGNNCC 5 cut(s) 318, 453, 669, 1158, 1585
NmeAIII GCCGAG 1 cut(s) 1096
NmuCI GTSAC 2 cut(s) 520, 617
NspV TTCGAA 1 cut(s) 1508
PagI TCATGA 1 cut(s) 648
PciSI GCTCTTC 1 cut(s) 834
PctI GAATGC 1 cut(s) 1578
PdmI GAANNNNTTC 1 cut(s) 843
PflMI CCANNNNNTGG 1 cut(s) 287
PleI GAGTC 2 cut(s) 138, 835
PpsI GAGTC 2 cut(s) 138, 835
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 3 cut(s) 172, 1537, 1561
PspFI CCCAGC 1 cut(s) 1340
PspGI CCWGG 3 cut(s) 172, 1537, 1561
PspN4I GGNNCC 5 cut(s) 318, 453, 669, 1158, 1585
PspPI GGNCC 4 cut(s) 290, 1033, 1565, 1584
PsuI RGATCY 2 cut(s) 109, 667
RsaI GTAC 2 cut(s) 946, 1015
RsaNI GTAC 2 cut(s) 945, 1014
SacI GAGCTC 1 cut(s) 160
SalI GTCGAC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 834
SaqAI TTAA 5 cut(s) 137, 717, 729, 1091, 1122
Sau96I GGNCC 4 cut(s) 290, 1033, 1565, 1584
SchI GAGTC 2 cut(s) 138, 836
ScrFI CCNGG 4 cut(s) 174, 398, 1539, 1563
SduI GDGCHC 2 cut(s) 160, 979
SfaNI GCATC 5 cut(s) 367, 1125, 1153, 1186, 1213
SfcI CTRYAG 3 cut(s) 636, 758, 834
SfuI TTCGAA 1 cut(s) 1508
SinI GGWCC 4 cut(s) 290, 1033, 1565, 1584
SmlI CTYRAG 2 cut(s) 121, 136
SmoI CTYRAG 2 cut(s) 121, 136
Sse9I AATT 3 cut(s) 714, 736, 1105
SspMI CTAG 2 cut(s) 20, 1067
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 4 cut(s) 172, 396, 1537, 1561
TaaI ACNGT 3 cut(s) 239, 922, 1271
TaqI TCGA 3 cut(s) 142, 178, 1508
TasI AATT 3 cut(s) 714, 736, 1105
TauI GCSGC 3 cut(s) 235, 752, 1340
Tru1I TTAA 5 cut(s) 137, 717, 729, 1091, 1122
Tru9I TTAA 5 cut(s) 137, 717, 729, 1091, 1122
TscAI CASTG 2 cut(s) 622, 759
TseFI GTSAC 2 cut(s) 520, 617
TseI GCWGC 7 cut(s) 193, 424, 986, 998, 1240, 1243, 1303
Tsp45I GTSAC 2 cut(s) 520, 617
TspDTI ATGAA 6 cut(s) 236, 341, 646, 680, 920, 1535
TspGWI ACGGA 2 cut(s) 426, 932
TspRI CASTG 2 cut(s) 622, 759
Van91I CCANNNNNTGG 1 cut(s) 287
Vha464I CTTAAG 1 cut(s) 136
VpaK11BI GGWCC 4 cut(s) 290, 1033, 1565, 1584
XcmI CCANNNNNNNNNTGG 1 cut(s) 1451
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 2 cut(s) 20, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.