Rh2BG002000

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012384
Physical Location & Seq
Reverse (-)
216999 .. 221052
4054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG002000.1

Sequence Viewer

Length: 1404 bp
ATGGCCCAAGAAGAAGGTGAACCCGCACTCTCCGATTCTCTATTAGATCCATCTCTATCTCTCTCCCGAACCGTTTCCTTTAGCCGCCTCAATGCCCAGGCCCCCGAGTTCGTCCCCAATCGCACCTCCGCCGCCCCACCCGCAGTGGTACCACCTCCTCCTCCTGTCGCTCAGGTCCACGTCTACTCTCCGCCTCCCACGCCTTTCCATGTTCCGATCCAGGTCGTCCCTCCTCCTCCGCCTCCTCACGTGGTGCCCGTCCATCACCGTCATCACTTGCCGGTTCAGTACCATCATCATCATCAGTATTACGCTGCTGGATTTGCCGGAGACCAAGAGCCGCCGCCGCCAGAGGATCAACCTCCGCCGGATCACGCTGCCTCCTCCAAGTCTCACAAGCTTTCCGATGAAGCCACTTCCAAGATTTTGAATCAGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCTGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCGTAAGTAGTCATTCCCAGCTTGCAACTGTATTGCGGAACTCCTCAAAGCTTGTAGTACATGAAGATGGGAAGAAGGTCAGACGCCAGCATCCCCTGACTCAGTCAGATATGGAAGAGTTGCAATCTCGCATTGTTGTTGCTGAAAATTTGCCTGAGGATCATTGCCACCAAAACCTGATGAAGATTTTCTCTGCTGCTGGGAGTGTGAAGACAATTCGTACCTGCCAGCCGCAAACCTCAAATAGTAATTCTTCCTCAGCATCCAGATCAGCAAAAGCAGATGGCATGCATTTCAGTAACAAGTTGCATGCATTTGTGGAATATGAATCCCCTGAGCTGGCGGAGAAAGCTGTGGCCGAACTTAATGATGAGGGGAACTGGAGGAGTGGACTTAGAGTCCGATTAATGCTTAAACGCATGTCAAAACCTGGTCAAGTGCGAGGGAAAAAGGGGCAGGATGGGGAACTGCAATTAGAGGAAGAGGATGCTTCTACACATGAACAAATACATCATGCCAATGAGAAACAATCAGAAGATTCTTCCCGGCAATTTGATGCTCATTCACATGAACAAGGAGAGGAACATGCGAATGATAAGGAGGGTGGGCAAAGGAAAGCGCGTAATCGACAAGGAGGACGCGGCAAGGGGCGTGGGCGGGGTCAATACCACCACAATAATCGAAATCATGTTGGGACTCCTCACAACAGTTCAATTGGTAGTAGTGAGCAGCCGGGTATAGGTGTAGGTGTAGCCAGACAGCCTCCTGGACCTCGTATGCCAGATGGCACAAGAGGATTTGCAATGGGTCGGGGGAGGCCAGTTGCTGTTAATATTGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

467

Amino Acids

51.33

Weight (kDa)

7.23

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 142 - 200 3.1e-20 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43970 AT2G43970
fragaria_vesca FvH4_1g00200
malus_domestica MD00G1087300.v1.1 MD15G1143100.v1.1
prunus_persica Prupe.7G269900_v2.0.a1 Prupe.7G269900_v2.0.a1
pyrus_communis pycom15g12920 pycom290g00200
rosa_chinensis RchiOBHm_Chr2g0084471
rosa_laevigata RLG00000015621
rosa_multiflora Rmu_sc0009404.1_g000001
rosa_roxburghii Rroxscaffold_2G00156030
rosa_rugosa Rorug01G0454300
rosa_samantha Rh2AG002400 Rh2BG002000 Rh2CG002500 Rh2DG002500
rosa_wichuraiana Rw2G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 791
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 2 cut(s) 148, 253
AccI GTMKAC 1 cut(s) 183
AccII CGCG 2 cut(s) 1180, 1200
AclWI GGATC 5 cut(s) 41, 211, 363, 378, 726
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 1 cut(s) 706
AcuI CTGAAG 1 cut(s) 528
AcvI CACGTG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 643
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 4 cut(s) 150, 290, 618, 781
AfiI CCNNNNNNNGG 2 cut(s) 898, 1298
AgsI TTSAA 3 cut(s) 430, 544, 1272
AhdI GACNNNNNGTC 1 cut(s) 956
AjiI CACGTC 1 cut(s) 181
AjnI CCWGG 4 cut(s) 96, 219, 988, 1324
AluBI AGCT 6 cut(s) 400, 467, 580, 610, 898, 911
AluI AGCT 6 cut(s) 400, 467, 580, 610, 898, 911
Alw26I GTCTC 2 cut(s) 324, 396
AlwI GGATC 5 cut(s) 41, 211, 363, 378, 726
AlwNI CAGNNNCTG 1 cut(s) 1385
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 5 cut(s) 3, 99, 555, 915, 1376
ApeKI GCWGC 4 cut(s) 314, 377, 755, 1288
ApoI RAATTY 1 cut(s) 706
AseI ATTAAT 1 cut(s) 965
Asp700I GAANNNNTTC 2 cut(s) 73, 746
Asp718I GGTACC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 1180
AspS9I GGNCC 5 cut(s) 4, 100, 175, 556, 1328
AsuC2I CCSGG 2 cut(s) 1105, 1293
AsuHPI GGTGA 2 cut(s) 29, 257
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 175, 1328
AxyI CCTNAGG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 258
BanI GGYRCC 2 cut(s) 148, 253
BbrPI CACGTG 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 776
BbvCI CCTCAGC 1 cut(s) 817
BbvI GCAGC 4 cut(s) 301, 364, 742, 1300
BccI CCATC 7 cut(s) 58, 270, 300, 620, 836, 1013, 1337
BciT130I CCWGG 4 cut(s) 98, 221, 990, 1326
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 2 cut(s) 1105, 1293
BcoDI GTCTC 2 cut(s) 324, 396
BfuAI ACCTGC 1 cut(s) 791
Bme1390I CCNGG 6 cut(s) 98, 221, 990, 1105, 1293, 1326
Bme18I GGWCC 2 cut(s) 175, 1328
BmeRI GACNNNNNGTC 1 cut(s) 956
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 5 cut(s) 4, 100, 175, 556, 1328
BmiI GGNNCC 3 cut(s) 102, 150, 255
BmrFI CCNGG 6 cut(s) 98, 221, 990, 1105, 1293, 1326
BmsI GCATC 5 cut(s) 545, 658, 830, 1036, 1105
BpiI GAAGAC 1 cut(s) 776
BpmI CTGGAG 1 cut(s) 961
Bpu10I CCTNAGC 3 cut(s) 171, 817, 894
BpuMI CCSGG 2 cut(s) 1105, 1293
BsaAI YACGTR 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 643
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 2 cut(s) 898, 1298
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 944, 1379
Bse21I CCTNAGG 1 cut(s) 714
Bse3DI GCAATG 2 cut(s) 721, 1368
BseBI CCWGG 4 cut(s) 98, 221, 990, 1326
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 4 cut(s) 649, 821, 1024, 1051
BseLI CCNNNNNNNGG 2 cut(s) 898, 1298
BseMI GCAATG 2 cut(s) 721, 1368
BseMII CTCAG 5 cut(s) 185, 674, 705, 831, 885
BseNI ACTGG 2 cut(s) 944, 1379
BseRI GAGGAG 9 cut(s) 147, 150, 222, 225, 234, 373, 592, 958, 1248
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 4 cut(s) 301, 364, 742, 1300
BseYI CCCAGC 2 cut(s) 576, 758
Bsh1236I CGCG 2 cut(s) 1180, 1200
BshFI GGCC 5 cut(s) 5, 101, 557, 917, 1378
BshNI GGYRCC 2 cut(s) 148, 253
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 5 cut(s) 281, 327, 368, 1105, 1292
BslFI GGGAC 3 cut(s) 98, 212, 1267
BslI CCNNNNNNNGG 2 cut(s) 898, 1298
BsmAI GTCTC 2 cut(s) 324, 396
BsmFI GGGAC 3 cut(s) 98, 212, 1267
BsnI GGCC 5 cut(s) 5, 101, 557, 917, 1378
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 8 cut(s) 46, 216, 355, 370, 454, 475, 718, 827
BspANI GGCC 5 cut(s) 5, 101, 557, 917, 1378
BspCNI CTCAG 5 cut(s) 184, 673, 706, 830, 886
BspFNI CGCG 2 cut(s) 1180, 1200
BspLI GGNNCC 3 cut(s) 102, 150, 255
BspMI ACCTGC 1 cut(s) 791
BspPI GGATC 5 cut(s) 41, 211, 363, 378, 726
BspT107I GGYRCC 2 cut(s) 148, 253
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 2 cut(s) 721, 1368
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 2 cut(s) 944, 1379
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 8 cut(s) 46, 216, 355, 370, 454, 475, 718, 827
BssNI GRCGYC 1 cut(s) 643
Bst2UI CCWGG 4 cut(s) 98, 221, 990, 1326
Bst4CI ACNGT 4 cut(s) 73, 269, 589, 1268
Bst6I CTCTTC 2 cut(s) 669, 1035
BstACI GRCGYC 1 cut(s) 643
BstBAI YACGTR 1 cut(s) 250
BstC8I GCNNGC 6 cut(s) 582, 647, 788, 848, 870, 900
BstDEI CTNAG 7 cut(s) 171, 463, 660, 714, 817, 894, 953
BstF5I GGATG 4 cut(s) 649, 821, 1024, 1051
BstFNI CGCG 2 cut(s) 1180, 1200
BstHHI GCGC 1 cut(s) 1180
BstKTI GATC 8 cut(s) 49, 219, 358, 373, 457, 478, 721, 830
BstMAI GTCTC 2 cut(s) 324, 396
BstMBI GATC 8 cut(s) 46, 216, 355, 370, 454, 475, 718, 827
BstMWI GCNNNNNNNGC 5 cut(s) 140, 199, 323, 346, 908
BstNI CCWGG 4 cut(s) 98, 221, 990, 1326
BstNSI RCATGY 4 cut(s) 850, 872, 982, 1148
BstSCI CCNGG 6 cut(s) 96, 219, 988, 1103, 1291, 1324
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 2 cut(s) 1180, 1200
BstV1I GCAGC 4 cut(s) 301, 364, 742, 1300
BstV2I GAAGAC 1 cut(s) 776
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 5 cut(s) 5, 101, 557, 917, 1378
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 4 cut(s) 649, 821, 1024, 1051
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 457
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 6 cut(s) 582, 647, 788, 848, 870, 900
CaiI CAGNNNCTG 1 cut(s) 1385
CfoI GCGC 1 cut(s) 1180
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 5 cut(s) 4, 100, 175, 556, 1328
CseI GACGC 2 cut(s) 651, 1206
CsiI ACCWGGT 1 cut(s) 988
Csp6I GTAC 4 cut(s) 149, 289, 617, 780
CspCI CAANNNNNGTGG 2 cut(s) 1192, 1227
CviQI GTAC 4 cut(s) 149, 289, 617, 780
DdeI CTNAG 7 cut(s) 171, 463, 660, 714, 817, 894, 953
DpnI GATC 8 cut(s) 48, 218, 357, 372, 456, 477, 720, 829
DpnII GATC 8 cut(s) 46, 216, 355, 370, 454, 475, 718, 827
DraIII CACNNNGTG 1 cut(s) 253
DriI GACNNNNNGTC 1 cut(s) 956
EaeI YGGCCR 1 cut(s) 915
Eam1104I CTCTTC 2 cut(s) 669, 1035
Eam1105I GACNNNNNGTC 1 cut(s) 956
EarI CTCTTC 2 cut(s) 669, 1035
EciI GGCGGA 5 cut(s) 118, 180, 228, 354, 917
Eco31I GGTCTC 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 175, 1328
Eco57I CTGAAG 1 cut(s) 528
Eco72I CACGTG 1 cut(s) 250
Eco81I CCTNAGG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 100, 556
EcoRII CCWGG 4 cut(s) 96, 219, 988, 1324
EcoT22I ATGCAT 2 cut(s) 852, 874
FaqI GGGAC 3 cut(s) 98, 212, 1267
FauI CCCGC 3 cut(s) 31, 148, 1209
FbaI TGATCA 1 cut(s) 475
FblI GTMKAC 1 cut(s) 183
FokI GGATG 4 cut(s) 636, 808, 1031, 1058
GlaI GCGC 1 cut(s) 1179
GsaI CCCAGC 2 cut(s) 580, 762
GsuI CTGGAG 1 cut(s) 961
HaeIII GGCC 5 cut(s) 5, 101, 557, 917, 1378
HapII CCGG 5 cut(s) 281, 327, 368, 1105, 1292
HgaI GACGC 2 cut(s) 651, 1206
HhaI GCGC 1 cut(s) 1180
Hin1I GRCGYC 1 cut(s) 643
Hin6I GCGC 1 cut(s) 1178
HinP1I GCGC 1 cut(s) 1178
HindIII AAGCTT 2 cut(s) 398, 608
HinfI GANTC 7 cut(s) 35, 430, 658, 887, 957, 1097, 1255
HpaII CCGG 5 cut(s) 281, 327, 368, 1105, 1292
HphI GGTGA 2 cut(s) 29, 257
Hpy166II GTNNAC 4 cut(s) 20, 178, 184, 950
Hpy188I TCNGA 8 cut(s) 34, 216, 406, 459, 641, 667, 962, 1093
Hpy188III TCNNGA 3 cut(s) 66, 544, 825
Hpy8I GTNNAC 4 cut(s) 20, 178, 184, 950
HpyAV CCTTC 3 cut(s) 8, 503, 628
HpyCH4III ACNGT 4 cut(s) 73, 269, 589, 1268
HpyCH4IV ACGT 2 cut(s) 180, 249
HpyCH4V TGCA 9 cut(s) 536, 584, 682, 850, 868, 872, 1030, 1361, 1397
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 199, 323, 346, 908
HpyF3I CTNAG 7 cut(s) 171, 463, 660, 714, 817, 894, 953
HpySE526I ACGT 2 cut(s) 180, 249
Hsp92I GRCGYC 1 cut(s) 643
HspAI GCGC 1 cut(s) 1178
KpnI GGTACC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 8 cut(s) 46, 216, 355, 370, 454, 475, 718, 827
Lsp1109I GCAGC 4 cut(s) 301, 364, 742, 1300
LweI GCATC 5 cut(s) 545, 658, 830, 1036, 1105
MabI ACCWGGT 1 cut(s) 988
MaeII ACGT 2 cut(s) 180, 249
MaeIII GTNAC 1 cut(s) 857
MalI GATC 8 cut(s) 48, 218, 357, 372, 456, 477, 720, 829
MboI GATC 8 cut(s) 46, 216, 355, 370, 454, 475, 718, 827
MfeI CAATTG 1 cut(s) 1272
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 6 cut(s) 706, 774, 808, 1031, 1109, 1272
MlyI GAGTC 3 cut(s) 652, 966, 1249
Mph1103I ATGCAT 2 cut(s) 852, 874
MroXI GAANNNNTTC 2 cut(s) 73, 746
MseI TTAA 5 cut(s) 552, 924, 965, 972, 1389
MslI CAYNNNNRTG 4 cut(s) 624, 1077, 1125, 1149
MspI CCGG 5 cut(s) 281, 327, 368, 1105, 1292
MspR9I CCNGG 6 cut(s) 98, 221, 990, 1105, 1293, 1326
MunI CAATTG 1 cut(s) 1272
MvaI CCWGG 4 cut(s) 98, 221, 990, 1326
MvnI CGCG 2 cut(s) 1180, 1200
MwoI GCNNNNNNNGC 5 cut(s) 140, 199, 323, 346, 908
NciI CCSGG 2 cut(s) 1105, 1293
NdeII GATC 8 cut(s) 46, 216, 355, 370, 454, 475, 718, 827
NlaIV GGNNCC 3 cut(s) 102, 150, 255
NsiI ATGCAT 2 cut(s) 852, 874
NspI RCATGY 4 cut(s) 850, 872, 982, 1148
PaeI GCATGC 2 cut(s) 850, 872
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PdmI GAANNNNTTC 2 cut(s) 73, 746
PfeI GAWTC 4 cut(s) 35, 430, 887, 1097
PflFI GACNNNGTC 1 cut(s) 661
PfoI TCCNGGA 1 cut(s) 1324
PleI GAGTC 3 cut(s) 652, 965, 1249
PmaCI CACGTG 1 cut(s) 250
PmlI CACGTG 1 cut(s) 250
PpsI GAGTC 3 cut(s) 652, 965, 1249
Ppu21I YACGTR 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 965
Psp6I CCWGG 4 cut(s) 96, 219, 988, 1324
PspCI CACGTG 1 cut(s) 250
PspFI CCCAGC 2 cut(s) 576, 758
PspGI CCWGG 4 cut(s) 96, 219, 988, 1324
PspN4I GGNNCC 3 cut(s) 102, 150, 255
PspPI GGNCC 5 cut(s) 4, 100, 175, 556, 1328
PstNI CAGNNNCTG 1 cut(s) 1385
PsuI RGATCY 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 661
RsaI GTAC 4 cut(s) 150, 290, 618, 781
RsaNI GTAC 4 cut(s) 149, 289, 617, 780
RseI CAYNNNNRTG 4 cut(s) 624, 1077, 1125, 1149
SaqAI TTAA 5 cut(s) 552, 924, 965, 972, 1389
Sau3AI GATC 8 cut(s) 46, 216, 355, 370, 454, 475, 718, 827
Sau96I GGNCC 5 cut(s) 4, 100, 175, 556, 1328
SchI GAGTC 3 cut(s) 652, 966, 1249
ScrFI CCNGG 6 cut(s) 98, 221, 990, 1105, 1293, 1326
SduI GDGCHC 1 cut(s) 258
SexAI ACCWGGT 1 cut(s) 988
SfaNI GCATC 5 cut(s) 545, 658, 830, 1036, 1105
SinI GGWCC 2 cut(s) 175, 1328
SmiMI CAYNNNNRTG 4 cut(s) 624, 1077, 1125, 1149
SphI GCATGC 2 cut(s) 850, 872
Sse9I AATT 6 cut(s) 706, 774, 808, 1031, 1109, 1272
SspI AATATT 1 cut(s) 1393
StyD4I CCNGG 6 cut(s) 96, 219, 988, 1103, 1291, 1324
TaaI ACNGT 4 cut(s) 73, 269, 589, 1268
TaiI ACGT 2 cut(s) 183, 252
TaqI TCGA 2 cut(s) 1186, 1240
TasI AATT 6 cut(s) 706, 774, 808, 1031, 1109, 1272
TatI WGTACW 1 cut(s) 616
TauI GCSGC 7 cut(s) 87, 134, 343, 346, 349, 793, 1203
TfiI GAWTC 4 cut(s) 35, 430, 887, 1097
Tru1I TTAA 5 cut(s) 552, 924, 965, 972, 1389
Tru9I TTAA 5 cut(s) 552, 924, 965, 972, 1389
TscAI CASTG 2 cut(s) 150, 457
TseI GCWGC 4 cut(s) 314, 377, 755, 1288
TspDTI ATGAA 7 cut(s) 423, 481, 636, 755, 900, 1074, 1143
TspRI CASTG 2 cut(s) 150, 457
Tth111I GACNNNGTC 1 cut(s) 661
VpaK11BI GGWCC 2 cut(s) 175, 1328
VspI ATTAAT 1 cut(s) 965
XapI RAATTY 1 cut(s) 706
XceI RCATGY 4 cut(s) 850, 872, 982, 1148
XmiI GTMKAC 1 cut(s) 183
XmnI GAANNNNTTC 2 cut(s) 73, 746
Zsp2I ATGCAT 2 cut(s) 852, 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.