Rh2CG002500

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012384
Physical Location & Seq
Reverse (-)
227220 .. 231228
4009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG002500.1

Sequence Viewer

Length: 1407 bp
ATGGCCCAAGAAGAAGGTGAACCCGCACTCTCCGATTCTCTACTAGATCCATCTCTATCTCTCTCCCGAACCGTTTCCTTTAGCCGCCTCAATGCCCAGGCCCCCGAGTTCGTCCCCAATCGCACCTCCGCCACCCCACCCGCAGTGGTACCACCTCCTCCTGTCGCTCAGGTCCACGTCTACTCTCCGCCTCCCACGCCTTTCCATGTTCCGATCCAGGTCGTCCCTCCTCCTCCGCCTCCTCACGTGGTGCCCGTCCATCACCGCCATCACTTGCCGGTTCAGTACCATCATCATCATCATCAGTATTACGCTGCTGGATTTGCCGGAGACCAAGAGCCGCCGCCGCCAGAGGATCAACCTCCTCCGCCGGATCACGCTGCCTCCTCCAAGTCTCACAAGCTTTCCGATGAAGCCACTTCCAAGATTTTGAATCAGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCTGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCGTAAGTAGTCATTCCCAGCTTGCAACTGTATTGCGGAACTCCTCAAAGCTTGTAGTACATGAAGATGGGAAGAAGGTCAGACGTCAGCATCCCCTGACTCAATCAGATATGGAAGAGTTGCAATCTCGCATTGTTGTTGCTGAAAATTTGCCTGAGGATCATTGCCACCAAAACCTCATGAAGATTTTCTCTGCTGCTGGGAGTGTGAAGACAATTCGTACCTGCCAGCCGCAAACCTCAAATAGTAATTCTTCCTCAGCATCCAGATCAGCAAAAGCAGATGGCATGCATTTCAGTAACAAGTTGCATGCATTTGTGGAATATGAATCCCCTGAGCTGGGGGAGAAAGCTGTGGCCGAACTTAATGATGAGGGGAACTGGAGGAGTGGACTTAGAGTCCGATTAATGCTTAAACGCATGTCAAAACCTGGTCAAGTGCGAGGGAAAAAGGGGCAGGATGGGGAGCTGCAATTAGAGGAAGAGGATGCTTCTACACATGAACAAATACATCATGCCAATGAGAAACAATCAGAAGATTCTTCCCGGCAATTTGATGCCCATTCACATGAACAAGGAGAGGAACATGGGAATGATAAGGAGGGCGGGCAAAGGAAAGCGCGTAATCGACAAGGAGGACGCGGCAAGGGGCGTGGGCGGGGTCAATACCACCACAATAATCGAAATCATGTTGGGACTCCTCACAACAGTTCATTTGGTAGTAGTGAGCAGCCGGGTATAGGTGTAGGTGTAGCCAGACAGCCGCCTGGACCTCGTATGCCAGATGGCACAAGAGGATTTGCAATGGGTCGGGGGAGGCCAGTTGCTGTTAATATTGCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

468

Amino Acids

51.5

Weight (kDa)

7.52

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 143 - 201 3.1e-20 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43970 AT2G43970
fragaria_vesca FvH4_1g00200
malus_domestica MD00G1087300.v1.1 MD15G1143100.v1.1
prunus_persica Prupe.7G269900_v2.0.a1 Prupe.7G269900_v2.0.a1
pyrus_communis pycom15g12920 pycom290g00200
rosa_chinensis RchiOBHm_Chr2g0084471
rosa_laevigata RLG00000015621
rosa_multiflora Rmu_sc0009404.1_g000001
rosa_roxburghii Rroxscaffold_2G00156030
rosa_rugosa Rorug01G0454300
rosa_samantha Rh2AG002400 Rh2BG002000 Rh2CG002500 Rh2DG002500
rosa_wichuraiana Rw2G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 649
Acc36I ACCTGC 1 cut(s) 794
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 2 cut(s) 148, 250
AccI GTMKAC 1 cut(s) 180
AccII CGCG 2 cut(s) 1183, 1203
AclWI GGATC 5 cut(s) 41, 208, 363, 381, 729
AcoI YGGCCR 1 cut(s) 918
AcsI RAATTY 1 cut(s) 709
AcuI CTGAAG 1 cut(s) 531
AcvI CACGTG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 646
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 4 cut(s) 150, 287, 621, 784
AfiI CCNNNNNNNGG 3 cut(s) 901, 902, 1301
AgsI TTSAA 2 cut(s) 433, 547
AhdI GACNNNNNGTC 1 cut(s) 959
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 4 cut(s) 96, 216, 991, 1327
AluBI AGCT 7 cut(s) 403, 470, 583, 613, 901, 914, 1030
AluI AGCT 7 cut(s) 403, 470, 583, 613, 901, 914, 1030
Alw26I GTCTC 2 cut(s) 324, 399
AlwI GGATC 5 cut(s) 41, 208, 363, 381, 729
AlwNI CAGNNNCTG 1 cut(s) 1388
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 5 cut(s) 3, 99, 558, 918, 1379
ApeKI GCWGC 5 cut(s) 314, 380, 758, 1030, 1291
ApoI RAATTY 1 cut(s) 709
AseI ATTAAT 1 cut(s) 968
Asp700I GAANNNNTTC 2 cut(s) 73, 749
Asp718I GGTACC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 1183
AspS9I GGNCC 5 cut(s) 4, 100, 172, 559, 1331
AsuC2I CCSGG 2 cut(s) 1108, 1296
AsuHPI GGTGA 2 cut(s) 29, 254
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 172, 1331
AxyI CCTNAGG 1 cut(s) 717
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 2 cut(s) 148, 250
BbrPI CACGTG 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 779
BbvCI CCTCAGC 1 cut(s) 820
BbvI GCAGC 5 cut(s) 301, 367, 745, 1017, 1303
BccI CCATC 8 cut(s) 58, 267, 276, 297, 623, 839, 1016, 1340
BciT130I CCWGG 4 cut(s) 98, 218, 993, 1329
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 2 cut(s) 1108, 1296
BcoDI GTCTC 2 cut(s) 324, 399
BfaI CTAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 794
Bme1390I CCNGG 6 cut(s) 98, 218, 993, 1108, 1296, 1329
Bme18I GGWCC 2 cut(s) 172, 1331
BmeRI GACNNNNNGTC 1 cut(s) 959
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 5 cut(s) 4, 100, 172, 559, 1331
BmiI GGNNCC 3 cut(s) 102, 150, 252
BmrFI CCNGG 6 cut(s) 98, 218, 993, 1108, 1296, 1329
BmsI GCATC 5 cut(s) 548, 661, 833, 1039, 1108
BpiI GAAGAC 1 cut(s) 779
BpmI CTGGAG 1 cut(s) 964
Bpu10I CCTNAGC 3 cut(s) 168, 820, 897
BpuMI CCSGG 2 cut(s) 1108, 1296
BsaAI YACGTR 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 3 cut(s) 901, 902, 1301
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 947, 1382
Bse21I CCTNAGG 1 cut(s) 717
Bse3DI GCAATG 2 cut(s) 724, 1371
BseBI CCWGG 4 cut(s) 98, 218, 993, 1329
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 4 cut(s) 652, 824, 1027, 1054
BseLI CCNNNNNNNGG 3 cut(s) 901, 902, 1301
BseMI GCAATG 2 cut(s) 724, 1371
BseMII CTCAG 4 cut(s) 182, 708, 834, 888
BseNI ACTGG 2 cut(s) 947, 1382
BseRI GAGGAG 9 cut(s) 147, 219, 222, 231, 354, 376, 595, 961, 1251
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 5 cut(s) 301, 367, 745, 1017, 1303
BseYI CCCAGC 3 cut(s) 579, 761, 901
Bsh1236I CGCG 2 cut(s) 1183, 1203
BshFI GGCC 5 cut(s) 5, 101, 560, 920, 1381
BshNI GGYRCC 2 cut(s) 148, 250
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 5 cut(s) 278, 327, 371, 1108, 1295
BslFI GGGAC 3 cut(s) 98, 209, 1270
BslI CCNNNNNNNGG 3 cut(s) 901, 902, 1301
BsmAI GTCTC 2 cut(s) 324, 399
BsmFI GGGAC 3 cut(s) 98, 209, 1270
BsnI GGCC 5 cut(s) 5, 101, 560, 920, 1381
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 8 cut(s) 46, 213, 355, 373, 457, 478, 721, 830
BspANI GGCC 5 cut(s) 5, 101, 560, 920, 1381
BspCNI CTCAG 4 cut(s) 181, 709, 833, 889
BspFNI CGCG 2 cut(s) 1183, 1203
BspHI TCATGA 1 cut(s) 741
BspLI GGNNCC 3 cut(s) 102, 150, 252
BspMI ACCTGC 1 cut(s) 794
BspPI GGATC 5 cut(s) 41, 208, 363, 381, 729
BspT107I GGYRCC 2 cut(s) 148, 250
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 2 cut(s) 724, 1371
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 947, 1382
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 8 cut(s) 46, 213, 355, 373, 457, 478, 721, 830
BssNI GRCGYC 1 cut(s) 646
Bst2UI CCWGG 4 cut(s) 98, 218, 993, 1329
Bst4CI ACNGT 3 cut(s) 73, 592, 1271
Bst6I CTCTTC 2 cut(s) 672, 1038
BstACI GRCGYC 1 cut(s) 646
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 5 cut(s) 585, 791, 851, 873, 1169
BstDEI CTNAG 6 cut(s) 168, 466, 717, 820, 897, 956
BstF5I GGATG 4 cut(s) 652, 824, 1027, 1054
BstFNI CGCG 2 cut(s) 1183, 1203
BstHHI GCGC 1 cut(s) 1183
BstKTI GATC 8 cut(s) 49, 216, 358, 376, 460, 481, 724, 833
BstMAI GTCTC 2 cut(s) 324, 399
BstMBI GATC 8 cut(s) 46, 213, 355, 373, 457, 478, 721, 830
BstMWI GCNNNNNNNGC 3 cut(s) 196, 323, 346
BstNI CCWGG 4 cut(s) 98, 218, 993, 1329
BstNSI RCATGY 3 cut(s) 853, 875, 985
BstSCI CCNGG 6 cut(s) 96, 216, 991, 1106, 1294, 1327
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 2 cut(s) 1183, 1203
BstV1I GCAGC 5 cut(s) 301, 367, 745, 1017, 1303
BstV2I GAAGAC 1 cut(s) 779
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 717
BsuRI GGCC 5 cut(s) 5, 101, 560, 920, 1381
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 4 cut(s) 652, 824, 1027, 1054
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 460
BveI ACCTGC 1 cut(s) 794
Cac8I GCNNGC 5 cut(s) 585, 791, 851, 873, 1169
CaiI CAGNNNCTG 1 cut(s) 1388
CciI TCATGA 1 cut(s) 741
CfoI GCGC 1 cut(s) 1183
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 5 cut(s) 4, 100, 172, 559, 1331
CseI GACGC 1 cut(s) 1209
CsiI ACCWGGT 1 cut(s) 991
Csp6I GTAC 4 cut(s) 149, 286, 620, 783
CspCI CAANNNNNGTGG 2 cut(s) 1195, 1230
CviQI GTAC 4 cut(s) 149, 286, 620, 783
DdeI CTNAG 6 cut(s) 168, 466, 717, 820, 897, 956
DpnI GATC 8 cut(s) 48, 215, 357, 375, 459, 480, 723, 832
DpnII GATC 8 cut(s) 46, 213, 355, 373, 457, 478, 721, 830
DraIII CACNNNGTG 1 cut(s) 250
DriI GACNNNNNGTC 1 cut(s) 959
EaeI YGGCCR 1 cut(s) 918
Eam1104I CTCTTC 2 cut(s) 672, 1038
Eam1105I GACNNNNNGTC 1 cut(s) 959
EarI CTCTTC 2 cut(s) 672, 1038
EciI GGCGGA 4 cut(s) 118, 177, 225, 357
Eco31I GGTCTC 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 172, 1331
Eco57I CTGAAG 1 cut(s) 531
Eco72I CACGTG 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 100, 559
EcoRII CCWGG 4 cut(s) 96, 216, 991, 1327
EcoT22I ATGCAT 2 cut(s) 855, 877
FaqI GGGAC 3 cut(s) 98, 209, 1270
FauI CCCGC 4 cut(s) 31, 148, 1160, 1212
FbaI TGATCA 1 cut(s) 478
FblI GTMKAC 1 cut(s) 180
FokI GGATG 4 cut(s) 639, 811, 1034, 1061
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 1182
GsaI CCCAGC 3 cut(s) 583, 765, 905
GsuI CTGGAG 1 cut(s) 964
HaeIII GGCC 5 cut(s) 5, 101, 560, 920, 1381
HapII CCGG 5 cut(s) 278, 327, 371, 1108, 1295
HgaI GACGC 1 cut(s) 1209
HhaI GCGC 1 cut(s) 1183
Hin1I GRCGYC 1 cut(s) 646
Hin6I GCGC 1 cut(s) 1181
HinP1I GCGC 1 cut(s) 1181
HindIII AAGCTT 2 cut(s) 401, 611
HinfI GANTC 7 cut(s) 35, 433, 661, 890, 960, 1100, 1258
HpaII CCGG 5 cut(s) 278, 327, 371, 1108, 1295
HphI GGTGA 2 cut(s) 29, 254
Hpy166II GTNNAC 4 cut(s) 20, 175, 181, 953
Hpy188I TCNGA 8 cut(s) 34, 213, 409, 462, 644, 670, 965, 1096
Hpy188III TCNNGA 4 cut(s) 66, 547, 742, 828
Hpy8I GTNNAC 4 cut(s) 20, 175, 181, 953
HpyAV CCTTC 3 cut(s) 8, 506, 631
HpyCH4III ACNGT 3 cut(s) 73, 592, 1271
HpyCH4IV ACGT 3 cut(s) 177, 246, 646
HpyCH4V TGCA 9 cut(s) 539, 587, 685, 853, 871, 875, 1033, 1364, 1400
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 323, 346
HpyF3I CTNAG 6 cut(s) 168, 466, 717, 820, 897, 956
HpySE526I ACGT 3 cut(s) 177, 246, 646
Hsp92I GRCGYC 1 cut(s) 646
HspAI GCGC 1 cut(s) 1181
KpnI GGTACC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 8 cut(s) 46, 213, 355, 373, 457, 478, 721, 830
LmnI GCTCC 1 cut(s) 1027
Lsp1109I GCAGC 5 cut(s) 301, 367, 745, 1017, 1303
LweI GCATC 5 cut(s) 548, 661, 833, 1039, 1108
MabI ACCWGGT 1 cut(s) 991
MaeI CTAG 1 cut(s) 44
MaeII ACGT 3 cut(s) 177, 246, 646
MaeIII GTNAC 1 cut(s) 860
MalI GATC 8 cut(s) 48, 215, 357, 375, 459, 480, 723, 832
MboI GATC 8 cut(s) 46, 213, 355, 373, 457, 478, 721, 830
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 5 cut(s) 709, 777, 811, 1034, 1112
MlyI GAGTC 3 cut(s) 655, 969, 1252
Mph1103I ATGCAT 2 cut(s) 855, 877
MroXI GAANNNNTTC 2 cut(s) 73, 749
MseI TTAA 5 cut(s) 555, 927, 968, 975, 1392
MslI CAYNNNNRTG 4 cut(s) 627, 1080, 1128, 1152
MspI CCGG 5 cut(s) 278, 327, 371, 1108, 1295
MspR9I CCNGG 6 cut(s) 98, 218, 993, 1108, 1296, 1329
MvaI CCWGG 4 cut(s) 98, 218, 993, 1329
MvnI CGCG 2 cut(s) 1183, 1203
MwoI GCNNNNNNNGC 3 cut(s) 196, 323, 346
NciI CCSGG 2 cut(s) 1108, 1296
NdeII GATC 8 cut(s) 46, 213, 355, 373, 457, 478, 721, 830
NlaIV GGNNCC 3 cut(s) 102, 150, 252
NsiI ATGCAT 2 cut(s) 855, 877
NspI RCATGY 3 cut(s) 853, 875, 985
PaeI GCATGC 2 cut(s) 853, 875
PagI TCATGA 1 cut(s) 741
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 2 cut(s) 73, 749
PfeI GAWTC 4 cut(s) 35, 433, 890, 1100
PleI GAGTC 3 cut(s) 655, 968, 1252
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 3 cut(s) 655, 968, 1252
Ppu21I YACGTR 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 968
Psp6I CCWGG 4 cut(s) 96, 216, 991, 1327
PspCI CACGTG 1 cut(s) 247
PspFI CCCAGC 3 cut(s) 579, 761, 901
PspGI CCWGG 4 cut(s) 96, 216, 991, 1327
PspN4I GGNNCC 3 cut(s) 102, 150, 252
PspPI GGNCC 5 cut(s) 4, 100, 172, 559, 1331
PstNI CAGNNNCTG 1 cut(s) 1388
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 4 cut(s) 150, 287, 621, 784
RsaNI GTAC 4 cut(s) 149, 286, 620, 783
RseI CAYNNNNRTG 4 cut(s) 627, 1080, 1128, 1152
SaqAI TTAA 5 cut(s) 555, 927, 968, 975, 1392
Sau3AI GATC 8 cut(s) 46, 213, 355, 373, 457, 478, 721, 830
Sau96I GGNCC 5 cut(s) 4, 100, 172, 559, 1331
SchI GAGTC 3 cut(s) 655, 969, 1252
ScrFI CCNGG 6 cut(s) 98, 218, 993, 1108, 1296, 1329
SduI GDGCHC 1 cut(s) 255
SexAI ACCWGGT 1 cut(s) 991
SfaNI GCATC 5 cut(s) 548, 661, 833, 1039, 1108
SinI GGWCC 2 cut(s) 172, 1331
SmiMI CAYNNNNRTG 4 cut(s) 627, 1080, 1128, 1152
SphI GCATGC 2 cut(s) 853, 875
Sse9I AATT 5 cut(s) 709, 777, 811, 1034, 1112
SspI AATATT 1 cut(s) 1396
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 6 cut(s) 96, 216, 991, 1106, 1294, 1327
TaaI ACNGT 3 cut(s) 73, 592, 1271
TaiI ACGT 3 cut(s) 180, 249, 649
TaqI TCGA 2 cut(s) 1189, 1243
TasI AATT 5 cut(s) 709, 777, 811, 1034, 1112
TatI WGTACW 1 cut(s) 619
TauI GCSGC 7 cut(s) 87, 343, 346, 349, 796, 1206, 1327
TfiI GAWTC 4 cut(s) 35, 433, 890, 1100
Tru1I TTAA 5 cut(s) 555, 927, 968, 975, 1392
Tru9I TTAA 5 cut(s) 555, 927, 968, 975, 1392
TscAI CASTG 2 cut(s) 150, 460
TseI GCWGC 5 cut(s) 314, 380, 758, 1030, 1291
TspDTI ATGAA 8 cut(s) 426, 484, 639, 758, 903, 1077, 1146, 1263
TspRI CASTG 2 cut(s) 150, 460
VpaK11BI GGWCC 2 cut(s) 172, 1331
VspI ATTAAT 1 cut(s) 968
XapI RAATTY 1 cut(s) 709
XceI RCATGY 3 cut(s) 853, 875, 985
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 2 cut(s) 73, 749
XspI CTAG 1 cut(s) 44
ZraI GACGTC 1 cut(s) 647
Zsp2I ATGCAT 2 cut(s) 855, 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.