Rh2AG002400

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012384
Physical Location & Seq
Reverse (-)
204566 .. 209413
4848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG002400.1

Sequence Viewer

Length: 1266 bp
ATGGCCCAAGAAGAAGGTGAACCCGCACTCTCCGATTCTCTATTAGATCCATCTCTATCTCTCTCCCGAACCGTTTCCTTTAGCCGCCTCAATGCCCAGGCCCCCGAGTTCGTCCCCAATCGCACCTCCGCCGCTCCACCCGCAGTGGTACCACCTCCTCCTGTCGCTCAGGTCCACGTCTACTCTCCGCCTCCCACGCCTTTCCATGTTCCGATCCAGGTCGTCCCTCCTCCTCCGCCTCCTCACGTGGTGCCCGTCCATCACCGCCATCACTTGCCGGTTCAGTACCATCATCATCATCAGTATTACGCTGCTGGATTTGCCGGAGACCAAGAGCCGCCGCCGCCAGAGGATCAACCTCCGCCGGATCATGCTGCCTCCTCCAAGTCTCACAAGCTTTCCGATGAAGCCACTTCCAAGATTTTGAATCAGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCTGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCGTAAGTAGTCATTCCCAGCTTGCAACTGTATTGCGGAACTCCTCAAAGCTTGTAGTACATGAAGATGGGAAGAAGGTCAGACGTCAGCATCCCCTGACTCAATCAGATATGGAAGAGTTGCAATCTCGCATTGTTGTTGCTGAAAATTTGCCTGAGGATCATTGCCACCAAAACCTCATGAAGATTTTCTCTGCTGCTGGGAGTGTGAGGACAATTCGTACCTGCCAGCCGCAAACCTCAAATAGTAATTCTTCCTCAGCATCCAGATCAGCAAAAGCAGATGGCATGCATTTCAGTAACAAGTTGCATGCATTTGTGGAATATGAATCCCCTGAGCTGGCGGAGAAAGCTGTGGCCGAACTTAATGATGAGGGGAACTGGAGGAGTGGACTTAGAGTCCGATTAATGCTTAAACGCATGGTATGCCAAAATATGGTTCCTTATTGTGTAGTTCAGTTCCAGTTCCTGAAATTATCCTTTTCCGTCCAAATAAAAAAGGAATGGCCATATTGTTTGTGTAATTCTTTGAAGTTCCTGAAATTTATGGTCAAAATTAATAGAAATTGTTGGCTTATTGTTCAAATTCAAGAAAAAAGCTGGTTTGTTGGTCAATTTTTTCGTTCTATGCTGAATAAATTGTCAATTAGTGTATGTAATTATACGATCAACTGCAGGCTTGTAAGTATGCTTTCTGGTATATTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

421

Amino Acids

47.39

Weight (kDa)

8.63

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 141 - 199 2.7e-20 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43970 AT2G43970
fragaria_vesca FvH4_1g00200
malus_domestica MD00G1087300.v1.1 MD15G1143100.v1.1
prunus_persica Prupe.7G269900_v2.0.a1 Prupe.7G269900_v2.0.a1
pyrus_communis pycom15g12920 pycom290g00200
rosa_chinensis RchiOBHm_Chr2g0084471
rosa_laevigata RLG00000015621
rosa_multiflora Rmu_sc0009404.1_g000001
rosa_roxburghii Rroxscaffold_2G00156030
rosa_rugosa Rorug01G0454300
rosa_samantha Rh2AG002400 Rh2BG002000 Rh2CG002500 Rh2DG002500
rosa_wichuraiana Rw2G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 643
Acc36I ACCTGC 1 cut(s) 788
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 2 cut(s) 148, 250
AccB7I CCANNNNNTGG 1 cut(s) 991
AccBSI CCGCTC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 180
AclWI GGATC 5 cut(s) 41, 208, 360, 375, 723
AcoI YGGCCR 2 cut(s) 912, 1061
AcsI RAATTY 3 cut(s) 703, 1097, 1140
AcuI CTGAAG 1 cut(s) 525
AcvI CACGTG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 640
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 4 cut(s) 150, 287, 615, 778
AfiI CCNNNNNNNGG 2 cut(s) 895, 991
AgsI TTSAA 6 cut(s) 427, 541, 1087, 1139, 1145, 1262
AhdI GACNNNNNGTC 1 cut(s) 953
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 2 cut(s) 96, 216
AjuI GAANNNNNNNTTGG 2 cut(s) 978, 1010
AluBI AGCT 7 cut(s) 397, 464, 577, 607, 895, 908, 1155
AluI AGCT 7 cut(s) 397, 464, 577, 607, 895, 908, 1155
Alw26I GTCTC 2 cut(s) 321, 393
AlwI GGATC 5 cut(s) 41, 208, 360, 375, 723
AlwNI CAGNNNCTG 1 cut(s) 1024
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 5 cut(s) 3, 99, 552, 912, 1061
ApeKI GCWGC 3 cut(s) 311, 374, 752
ApoI RAATTY 3 cut(s) 703, 1097, 1140
AseI ATTAAT 2 cut(s) 962, 1113
Asp700I GAANNNNTTC 2 cut(s) 73, 743
Asp718I GGTACC 1 cut(s) 148
AspS9I GGNCC 4 cut(s) 4, 100, 172, 553
AsuHPI GGTGA 2 cut(s) 29, 254
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 711
BaeGI GKGCMC 1 cut(s) 255
BalI TGGCCA 1 cut(s) 1063
BanI GGYRCC 2 cut(s) 148, 250
BbrPI CACGTG 1 cut(s) 247
BbvCI CCTCAGC 1 cut(s) 814
BbvI GCAGC 3 cut(s) 298, 361, 739
BccI CCATC 6 cut(s) 58, 267, 276, 297, 617, 833
BciT130I CCWGG 2 cut(s) 98, 218
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 321, 393
BfmI CTRYAG 1 cut(s) 1228
BfuAI ACCTGC 1 cut(s) 788
BisI GCNGC 9 cut(s) 85, 132, 312, 338, 341, 344, 375, 753, 788
BlsI GCNGC 9 cut(s) 86, 133, 313, 339, 342, 345, 376, 754, 789
Bme1390I CCNGG 2 cut(s) 98, 218
Bme18I GGWCC 1 cut(s) 172
BmeRI GACNNNNNGTC 1 cut(s) 953
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 4 cut(s) 4, 100, 172, 553
BmiI GGNNCC 4 cut(s) 102, 150, 252, 996
BmrFI CCNGG 2 cut(s) 98, 218
BmsI GCATC 3 cut(s) 542, 655, 827
BpmI CTGGAG 1 cut(s) 958
Bpu10I CCTNAGC 3 cut(s) 168, 814, 891
BsaAI YACGTR 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 640
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 2 cut(s) 895, 991
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 941, 1018
Bse21I CCTNAGG 1 cut(s) 711
Bse3DI GCAATG 1 cut(s) 718
BseBI CCWGG 2 cut(s) 98, 218
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 646, 818
BseLI CCNNNNNNNGG 2 cut(s) 895, 991
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 4 cut(s) 182, 702, 828, 882
BseNI ACTGG 2 cut(s) 941, 1018
BseRI GAGGAG 7 cut(s) 147, 219, 222, 231, 370, 589, 955
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 3 cut(s) 298, 361, 739
BseYI CCCAGC 2 cut(s) 573, 755
BshFI GGCC 5 cut(s) 5, 101, 554, 914, 1063
BshNI GGYRCC 2 cut(s) 148, 250
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 3 cut(s) 278, 324, 365
BslFI GGGAC 2 cut(s) 98, 209
BslI CCNNNNNNNGG 2 cut(s) 895, 991
BsmAI GTCTC 2 cut(s) 321, 393
BsmFI GGGAC 2 cut(s) 98, 209
BsnI GGCC 5 cut(s) 5, 101, 554, 914, 1063
Bso31I GGTCTC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 9 cut(s) 46, 213, 352, 367, 451, 472, 715, 824, 1221
BspANI GGCC 5 cut(s) 5, 101, 554, 914, 1063
BspCNI CTCAG 4 cut(s) 181, 703, 827, 883
BspHI TCATGA 1 cut(s) 735
BspLI GGNNCC 4 cut(s) 102, 150, 252, 996
BspMAI CTGCAG 1 cut(s) 1232
BspMI ACCTGC 1 cut(s) 788
BspPI GGATC 5 cut(s) 41, 208, 360, 375, 723
BspT107I GGYRCC 2 cut(s) 148, 250
BspTNI GGTCTC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 718
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 941, 1018
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 9 cut(s) 46, 213, 352, 367, 451, 472, 715, 824, 1221
BssNI GRCGYC 1 cut(s) 640
Bst2UI CCWGG 2 cut(s) 98, 218
Bst4CI ACNGT 2 cut(s) 73, 586
Bst6I CTCTTC 1 cut(s) 666
BstACI GRCGYC 1 cut(s) 640
BstAPI GCANNNNNTGC 1 cut(s) 981
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 6 cut(s) 579, 785, 845, 867, 897, 1232
BstDEI CTNAG 6 cut(s) 168, 460, 711, 814, 891, 950
BstF5I GGATG 2 cut(s) 646, 818
BstKTI GATC 9 cut(s) 49, 216, 355, 370, 454, 475, 718, 827, 1224
BstMAI GTCTC 2 cut(s) 321, 393
BstMBI GATC 9 cut(s) 46, 213, 352, 367, 451, 472, 715, 824, 1221
BstMWI GCNNNNNNNGC 6 cut(s) 140, 196, 320, 343, 905, 981
BstNI CCWGG 2 cut(s) 98, 218
BstNSI RCATGY 2 cut(s) 847, 869
BstSCI CCNGG 2 cut(s) 96, 216
BstSFI CTRYAG 1 cut(s) 1228
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 3 cut(s) 298, 361, 739
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 711
BsuRI GGCC 5 cut(s) 5, 101, 554, 914, 1063
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 2 cut(s) 646, 818
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 454
BveI ACCTGC 1 cut(s) 788
Cac8I GCNNGC 6 cut(s) 579, 785, 845, 867, 897, 1232
CaiI CAGNNNCTG 1 cut(s) 1024
CciI TCATGA 1 cut(s) 735
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 4 cut(s) 4, 100, 172, 553
Csp6I GTAC 4 cut(s) 149, 286, 614, 777
CviAII CATG 7 cut(s) 206, 371, 617, 736, 844, 866, 976
CviQI GTAC 4 cut(s) 149, 286, 614, 777
DdeI CTNAG 6 cut(s) 168, 460, 711, 814, 891, 950
DpnI GATC 9 cut(s) 48, 215, 354, 369, 453, 474, 717, 826, 1223
DpnII GATC 9 cut(s) 46, 213, 352, 367, 451, 472, 715, 824, 1221
DraIII CACNNNGTG 1 cut(s) 250
DriI GACNNNNNGTC 1 cut(s) 953
EaeI YGGCCR 2 cut(s) 912, 1061
Eam1104I CTCTTC 1 cut(s) 666
Eam1105I GACNNNNNGTC 1 cut(s) 953
EarI CTCTTC 1 cut(s) 666
EciI GGCGGA 5 cut(s) 118, 177, 225, 351, 914
Eco31I GGTCTC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 525
Eco72I CACGTG 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 711
Eco88I CYCGRG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 100, 553
EcoRII CCWGG 2 cut(s) 96, 216
EcoT22I ATGCAT 2 cut(s) 849, 871
FaeI CATG 7 cut(s) 209, 374, 620, 739, 847, 869, 979
FaqI GGGAC 2 cut(s) 98, 209
FatI CATG 7 cut(s) 205, 370, 616, 735, 843, 865, 975
FauI CCCGC 2 cut(s) 31, 148
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 9 cut(s) 85, 132, 312, 338, 341, 344, 375, 753, 788
FokI GGATG 2 cut(s) 633, 805
Fsp4HI GCNGC 9 cut(s) 85, 132, 312, 338, 341, 344, 375, 753, 788
GluI GCNGC 9 cut(s) 85, 132, 312, 338, 341, 344, 375, 753, 788
GsaI CCCAGC 2 cut(s) 577, 759
GsuI CTGGAG 1 cut(s) 958
HaeIII GGCC 5 cut(s) 5, 101, 554, 914, 1063
HapII CCGG 3 cut(s) 278, 324, 365
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 7 cut(s) 209, 374, 620, 739, 847, 869, 979
HindIII AAGCTT 2 cut(s) 395, 605
HinfI GANTC 5 cut(s) 35, 427, 655, 884, 954
HpaII CCGG 3 cut(s) 278, 324, 365
HphI GGTGA 2 cut(s) 29, 254
Hpy166II GTNNAC 4 cut(s) 20, 175, 181, 947
Hpy188I TCNGA 7 cut(s) 34, 213, 403, 456, 638, 664, 959
Hpy188III TCNNGA 7 cut(s) 66, 541, 736, 822, 1024, 1093, 1145
Hpy8I GTNNAC 4 cut(s) 20, 175, 181, 947
HpyAV CCTTC 3 cut(s) 8, 500, 625
HpyCH4III ACNGT 2 cut(s) 73, 586
HpyCH4IV ACGT 3 cut(s) 177, 246, 640
HpyCH4V TGCA 7 cut(s) 533, 581, 679, 847, 865, 869, 1230
HpyF10VI GCNNNNNNNGC 6 cut(s) 140, 196, 320, 343, 905, 981
HpyF3I CTNAG 6 cut(s) 168, 460, 711, 814, 891, 950
HpySE526I ACGT 3 cut(s) 177, 246, 640
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 7 cut(s) 209, 374, 620, 739, 847, 869, 979
KpnI GGTACC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 9 cut(s) 46, 213, 352, 367, 451, 472, 715, 824, 1221
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 3 cut(s) 298, 361, 739
LweI GCATC 3 cut(s) 542, 655, 827
MaeII ACGT 3 cut(s) 177, 246, 640
MaeIII GTNAC 1 cut(s) 854
MalI GATC 9 cut(s) 48, 215, 354, 369, 453, 474, 717, 826, 1223
MbiI CCGCTC 1 cut(s) 134
MboI GATC 9 cut(s) 46, 213, 352, 367, 451, 472, 715, 824, 1221
MboII GAAGA 7 cut(s) 23, 556, 632, 640, 683, 751, 801
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 255
MlsI TGGCCA 1 cut(s) 1063
MluNI TGGCCA 1 cut(s) 1063
MlyI GAGTC 2 cut(s) 649, 963
Mox20I TGGCCA 1 cut(s) 1063
Mph1103I ATGCAT 2 cut(s) 849, 871
MroXI GAANNNNTTC 2 cut(s) 73, 743
MscI TGGCCA 1 cut(s) 1063
MseI TTAA 5 cut(s) 549, 921, 962, 969, 1113
MslI CAYNNNNRTG 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 1063
MspI CCGG 3 cut(s) 278, 324, 365
MspR9I CCNGG 2 cut(s) 98, 218
MvaI CCWGG 2 cut(s) 98, 218
MwoI GCNNNNNNNGC 6 cut(s) 140, 196, 320, 343, 905, 981
NdeII GATC 9 cut(s) 46, 213, 352, 367, 451, 472, 715, 824, 1221
NlaIII CATG 7 cut(s) 209, 374, 620, 739, 847, 869, 979
NlaIV GGNNCC 4 cut(s) 102, 150, 252, 996
NsiI ATGCAT 2 cut(s) 849, 871
NspI RCATGY 2 cut(s) 847, 869
PaeI GCATGC 2 cut(s) 847, 869
PagI TCATGA 1 cut(s) 735
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 2 cut(s) 73, 743
PfeI GAWTC 3 cut(s) 35, 427, 884
PflMI CCANNNNNTGG 1 cut(s) 991
PkrI GCNGC 9 cut(s) 86, 133, 313, 339, 342, 345, 376, 754, 789
PleI GAGTC 2 cut(s) 649, 962
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 2 cut(s) 649, 962
Ppu21I YACGTR 1 cut(s) 247
PshBI ATTAAT 2 cut(s) 962, 1113
Psp6I CCWGG 2 cut(s) 96, 216
PspCI CACGTG 1 cut(s) 247
PspFI CCCAGC 2 cut(s) 573, 755
PspGI CCWGG 2 cut(s) 96, 216
PspN4I GGNNCC 4 cut(s) 102, 150, 252, 996
PspPI GGNCC 4 cut(s) 4, 100, 172, 553
PstI CTGCAG 1 cut(s) 1232
PstNI CAGNNNCTG 1 cut(s) 1024
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 4 cut(s) 150, 287, 615, 778
RsaNI GTAC 4 cut(s) 149, 286, 614, 777
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 5 cut(s) 549, 921, 962, 969, 1113
SatI GCNGC 9 cut(s) 85, 132, 312, 338, 341, 344, 375, 753, 788
Sau3AI GATC 9 cut(s) 46, 213, 352, 367, 451, 472, 715, 824, 1221
Sau96I GGNCC 4 cut(s) 4, 100, 172, 553
SchI GAGTC 2 cut(s) 649, 963
ScrFI CCNGG 2 cut(s) 98, 218
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 3 cut(s) 542, 655, 827
SfcI CTRYAG 1 cut(s) 1228
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 621
SphI GCATGC 2 cut(s) 847, 869
StyD4I CCNGG 2 cut(s) 96, 216
TaaI ACNGT 2 cut(s) 73, 586
TaiI ACGT 3 cut(s) 180, 249, 643
TatI WGTACW 1 cut(s) 613
TauI GCSGC 6 cut(s) 87, 134, 340, 343, 346, 790
TfiI GAWTC 3 cut(s) 35, 427, 884
Tru1I TTAA 5 cut(s) 549, 921, 962, 969, 1113
Tru9I TTAA 5 cut(s) 549, 921, 962, 969, 1113
TscAI CASTG 2 cut(s) 150, 454
TseI GCWGC 3 cut(s) 311, 374, 752
TspDTI ATGAA 5 cut(s) 420, 478, 633, 752, 897
TspGWI ACGGA 1 cut(s) 1030
TspRI CASTG 2 cut(s) 150, 454
Van91I CCANNNNNTGG 1 cut(s) 991
VpaK11BI GGWCC 1 cut(s) 172
VspI ATTAAT 2 cut(s) 962, 1113
XapI RAATTY 3 cut(s) 703, 1097, 1140
XceI RCATGY 2 cut(s) 847, 869
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 2 cut(s) 73, 743
ZraI GACGTC 1 cut(s) 641
Zsp2I ATGCAT 2 cut(s) 849, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.