Rroxscaffold_2G00156030

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012384
Physical Location & Seq
Forward (+)
92533577 .. 92538106
4530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00156030.1

Sequence Viewer

Length: 1410 bp
ATGGCCCAAGAAGAAGGCGAACCCGCACTCTCCGATTCTCTATTAGATCCATCTCTATCTCTCTCCCGAACCGTTTCCTTTAGCCGCCTCAATGCCCAGGCCCCTGAGTTCGTCCCCAATCGCACCTCCGCCGCCCCACCCGCAGTGGTACCACCTCCTCCTGTCGCTCCGGTCCACGTCTACTCTCCGCCTCCTACTCCTTTCCATGTTCCGATCCAGGTCGTCCCTCCTCCTCCGCCTCCTCACGTGGTGCCCGTCCATCACCGTCATCACTTGCCGGTTCAGTACCATCATCATCATCATCATCATCAGTATTACGCTGCTGGATTTGCCGGAGACCAAGAGCCGCCGCCGCCGGAGGATCAGCCTCCGCCGGATCACGCTGCCTCCTCCAAGTCTCACAAGCTTTCCGATGAAGCCACTTCCAAGATTTTGAATCAGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCTGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTTGTAAGCAGTCATTCCCAGCTGGCAACTGTATTGCGGAACTCCTCAAAGCTTGTAGTACATGAAGATGGGAAGAAGGTCAGACGCCAGCATCCCCTGACTCAGTCAGATATGGAGGAGTTGCAATCTCGCATTGTTGTTGCTGAAAATTTGCCTGAGGATCATTGCCACCAAAACCTCATGAAGATTTTCTCTGCTGCTGGGAGTGTGAAGACAATTCGTACCTGCCAGCCGCAAACCTCAAATAGTAATTCTTCCTCAGCATCCAGATCAGCAAAAGCAGATGGCATGCATTTCAGTAACAAGTTGCATGCATTTGTCGAATATGAATCCCCTGAGCTGGCGGAGAAAGCTGTGGCCGAACTTAATGATGAGGGGAACTGGAGGAGTGGACTTAGAGTCCGATTAATGCTTAAACGCATGTCAAAACCTGGTCAAGTGCGAGGGAAAAAGGGGCAGGATGGGGAACTGCAATTAGAGGAAGAGGATGCTTCTACACATGAACAAATACATCATGCCAATGAGAAACAATCAGAAGATTCTTCCCGGCAATTTGATGCTCATTCACATGAACAAGGAGAGGAACATGGGAATGATAAGGAGGGCGGGCAAAGGAAAGCGCGTAATCGACAAGGAGGACGCGGCAAGGGGCGTGGGCGGGGTCAGTACCACCACAATAATCGAAATCATGTTGGGACTCCTCACAACAGTTCAATTGGTAGTAGTGAGCAGCCGGGTATAGGTGTAGGTGTAGCCAGACAGCCTCCTGGACCTCGTATGCCAGATGGCACAAGAGGATTTGCAATGGGTCGGGGGAGGCCAGTTGCTGTCAATATTGCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

469

Amino Acids

51.6

Weight (kDa)

7.54

Isoelectric Point (pI)

60.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 144 - 202 3.1e-20 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43970 AT2G43970
fragaria_vesca FvH4_1g00200
malus_domestica MD00G1087300.v1.1 MD15G1143100.v1.1
prunus_persica Prupe.7G269900_v2.0.a1 Prupe.7G269900_v2.0.a1
pyrus_communis pycom15g12920 pycom290g00200
rosa_chinensis RchiOBHm_Chr2g0084471
rosa_laevigata RLG00000015621
rosa_multiflora Rmu_sc0009404.1_g000001
rosa_roxburghii Rroxscaffold_2G00156030
rosa_rugosa Rorug01G0454300
rosa_samantha Rh2AG002400 Rh2BG002000 Rh2CG002500 Rh2DG002500
rosa_wichuraiana Rw2G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 797
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 2 cut(s) 148, 250
AccI GTMKAC 1 cut(s) 180
AccII CGCG 2 cut(s) 1186, 1206
AclWI GGATC 5 cut(s) 41, 208, 369, 384, 732
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 1 cut(s) 712
AcuI CTGAAG 1 cut(s) 534
AcvI CACGTG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 649
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 5 cut(s) 150, 287, 624, 787, 1232
AfiI CCNNNNNNNGG 2 cut(s) 904, 1304
AgsI TTSAA 3 cut(s) 436, 550, 1278
AhdI GACNNNNNGTC 1 cut(s) 962
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 4 cut(s) 96, 216, 994, 1330
AluBI AGCT 6 cut(s) 406, 473, 586, 616, 904, 917
AluI AGCT 6 cut(s) 406, 473, 586, 616, 904, 917
Alw26I GTCTC 2 cut(s) 330, 402
AlwI GGATC 5 cut(s) 41, 208, 369, 384, 732
AlwNI CAGNNNCTG 1 cut(s) 1391
AoxI GGCC 5 cut(s) 3, 99, 561, 921, 1382
ApeKI GCWGC 4 cut(s) 320, 383, 761, 1294
ApoI RAATTY 1 cut(s) 712
AseI ATTAAT 1 cut(s) 971
Asp700I GAANNNNTTC 2 cut(s) 73, 752
Asp718I GGTACC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 1186
AspS9I GGNCC 5 cut(s) 4, 100, 172, 562, 1334
AsuC2I CCSGG 2 cut(s) 1111, 1299
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 2 cut(s) 172, 1334
AxyI CCTNAGG 1 cut(s) 720
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 2 cut(s) 148, 250
BbrPI CACGTG 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 782
BbvCI CCTCAGC 1 cut(s) 823
BbvI GCAGC 4 cut(s) 307, 370, 748, 1306
BccI CCATC 7 cut(s) 58, 267, 297, 626, 842, 1019, 1343
BciT130I CCWGG 4 cut(s) 98, 218, 996, 1332
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 2 cut(s) 1111, 1299
BcoDI GTCTC 2 cut(s) 330, 402
BfuAI ACCTGC 1 cut(s) 797
Bme1390I CCNGG 6 cut(s) 98, 218, 996, 1111, 1299, 1332
Bme18I GGWCC 2 cut(s) 172, 1334
BmeRI GACNNNNNGTC 1 cut(s) 962
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 5 cut(s) 4, 100, 172, 562, 1334
BmiI GGNNCC 3 cut(s) 102, 150, 252
BmrFI CCNGG 6 cut(s) 98, 218, 996, 1111, 1299, 1332
BmsI GCATC 5 cut(s) 551, 664, 836, 1042, 1111
BpiI GAAGAC 1 cut(s) 782
BpmI CTGGAG 1 cut(s) 967
Bpu10I CCTNAGC 2 cut(s) 823, 900
BpuMI CCSGG 2 cut(s) 1111, 1299
BsaAI YACGTR 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 649
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 904, 1304
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 950, 1385
Bse21I CCTNAGG 1 cut(s) 720
Bse3DI GCAATG 2 cut(s) 727, 1374
BseBI CCWGG 4 cut(s) 98, 218, 996, 1332
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 4 cut(s) 655, 827, 1030, 1057
BseLI CCNNNNNNNGG 2 cut(s) 904, 1304
BseMI GCAATG 2 cut(s) 727, 1374
BseMII CTCAG 5 cut(s) 96, 680, 711, 837, 891
BseNI ACTGG 2 cut(s) 950, 1385
BseRI GAGGAG 9 cut(s) 147, 219, 222, 231, 379, 598, 695, 964, 1254
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 4 cut(s) 307, 370, 748, 1306
BseYI CCCAGC 2 cut(s) 582, 764
Bsh1236I CGCG 2 cut(s) 1186, 1206
BshFI GGCC 5 cut(s) 5, 101, 563, 923, 1384
BshNI GGYRCC 2 cut(s) 148, 250
BsiSI CCGG 7 cut(s) 170, 278, 333, 356, 374, 1111, 1298
BslFI GGGAC 3 cut(s) 98, 209, 1273
BslI CCNNNNNNNGG 2 cut(s) 904, 1304
BsmAI GTCTC 2 cut(s) 330, 402
BsmFI GGGAC 3 cut(s) 98, 209, 1273
BsnI GGCC 5 cut(s) 5, 101, 563, 923, 1384
Bso31I GGTCTC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 8 cut(s) 46, 213, 361, 376, 460, 481, 724, 833
BspANI GGCC 5 cut(s) 5, 101, 563, 923, 1384
BspCNI CTCAG 5 cut(s) 97, 679, 712, 836, 892
BspFNI CGCG 2 cut(s) 1186, 1206
BspHI TCATGA 1 cut(s) 744
BspLI GGNNCC 3 cut(s) 102, 150, 252
BspMI ACCTGC 1 cut(s) 797
BspPI GGATC 5 cut(s) 41, 208, 369, 384, 732
BspT107I GGYRCC 2 cut(s) 148, 250
BspTNI GGTCTC 1 cut(s) 330
BsrDI GCAATG 2 cut(s) 727, 1374
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 950, 1385
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 8 cut(s) 46, 213, 361, 376, 460, 481, 724, 833
BssNI GRCGYC 1 cut(s) 649
Bst2UI CCWGG 4 cut(s) 98, 218, 996, 1332
Bst4CI ACNGT 4 cut(s) 73, 266, 595, 1274
Bst6I CTCTTC 1 cut(s) 1041
BstACI GRCGYC 1 cut(s) 649
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 7 cut(s) 588, 653, 794, 854, 876, 906, 1172
BstDEI CTNAG 7 cut(s) 105, 469, 666, 720, 823, 900, 959
BstF5I GGATG 4 cut(s) 655, 827, 1030, 1057
BstFNI CGCG 2 cut(s) 1186, 1206
BstHHI GCGC 1 cut(s) 1186
BstKTI GATC 8 cut(s) 49, 216, 364, 379, 463, 484, 727, 836
BstMAI GTCTC 2 cut(s) 330, 402
BstMBI GATC 8 cut(s) 46, 213, 361, 376, 460, 481, 724, 833
BstMWI GCNNNNNNNGC 4 cut(s) 140, 329, 352, 914
BstNI CCWGG 4 cut(s) 98, 218, 996, 1332
BstNSI RCATGY 3 cut(s) 856, 878, 988
BstSCI CCNGG 6 cut(s) 96, 216, 994, 1109, 1297, 1330
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 2 cut(s) 1186, 1206
BstV1I GCAGC 4 cut(s) 307, 370, 748, 1306
BstV2I GAAGAC 1 cut(s) 782
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 720
BsuRI GGCC 5 cut(s) 5, 101, 563, 923, 1384
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 4 cut(s) 655, 827, 1030, 1057
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 463
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 7 cut(s) 588, 653, 794, 854, 876, 906, 1172
CaiI CAGNNNCTG 1 cut(s) 1391
CciI TCATGA 1 cut(s) 744
CfoI GCGC 1 cut(s) 1186
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 5 cut(s) 4, 100, 172, 562, 1334
CseI GACGC 2 cut(s) 657, 1212
CsiI ACCWGGT 1 cut(s) 994
Csp6I GTAC 5 cut(s) 149, 286, 623, 786, 1231
CspCI CAANNNNNGTGG 2 cut(s) 1198, 1233
CviQI GTAC 5 cut(s) 149, 286, 623, 786, 1231
DdeI CTNAG 7 cut(s) 105, 469, 666, 720, 823, 900, 959
DpnI GATC 8 cut(s) 48, 215, 363, 378, 462, 483, 726, 835
DpnII GATC 8 cut(s) 46, 213, 361, 376, 460, 481, 724, 833
DraIII CACNNNGTG 1 cut(s) 250
DriI GACNNNNNGTC 1 cut(s) 962
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 1 cut(s) 1041
Eam1105I GACNNNNNGTC 1 cut(s) 962
EarI CTCTTC 1 cut(s) 1041
EciI GGCGGA 5 cut(s) 118, 177, 225, 360, 923
Eco31I GGTCTC 1 cut(s) 330
Eco47I GGWCC 2 cut(s) 172, 1334
Eco57I CTGAAG 1 cut(s) 534
Eco72I CACGTG 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 720
EcoO109I RGGNCCY 2 cut(s) 100, 562
EcoRII CCWGG 4 cut(s) 96, 216, 994, 1330
EcoT22I ATGCAT 2 cut(s) 858, 880
FaqI GGGAC 3 cut(s) 98, 209, 1273
FauI CCCGC 4 cut(s) 31, 148, 1163, 1215
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 1 cut(s) 180
FokI GGATG 4 cut(s) 642, 814, 1037, 1064
GlaI GCGC 1 cut(s) 1185
GsaI CCCAGC 2 cut(s) 586, 768
GsuI CTGGAG 1 cut(s) 967
HaeIII GGCC 5 cut(s) 5, 101, 563, 923, 1384
HapII CCGG 7 cut(s) 170, 278, 333, 356, 374, 1111, 1298
HgaI GACGC 2 cut(s) 657, 1212
HhaI GCGC 1 cut(s) 1186
Hin1I GRCGYC 1 cut(s) 649
Hin6I GCGC 1 cut(s) 1184
HinP1I GCGC 1 cut(s) 1184
HindIII AAGCTT 2 cut(s) 404, 614
HinfI GANTC 7 cut(s) 35, 436, 664, 893, 963, 1103, 1261
HpaII CCGG 7 cut(s) 170, 278, 333, 356, 374, 1111, 1298
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 3 cut(s) 175, 181, 956
Hpy188I TCNGA 8 cut(s) 34, 213, 412, 465, 647, 673, 968, 1099
Hpy188III TCNNGA 4 cut(s) 66, 550, 745, 831
Hpy8I GTNNAC 3 cut(s) 175, 181, 956
HpyAV CCTTC 3 cut(s) 8, 509, 634
HpyCH4III ACNGT 4 cut(s) 73, 266, 595, 1274
HpyCH4IV ACGT 2 cut(s) 177, 246
HpyCH4V TGCA 8 cut(s) 542, 688, 856, 874, 878, 1036, 1367, 1403
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 329, 352, 914
HpyF3I CTNAG 7 cut(s) 105, 469, 666, 720, 823, 900, 959
HpySE526I ACGT 2 cut(s) 177, 246
Hsp92I GRCGYC 1 cut(s) 649
HspAI GCGC 1 cut(s) 1184
KpnI GGTACC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 8 cut(s) 46, 213, 361, 376, 460, 481, 724, 833
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 4 cut(s) 307, 370, 748, 1306
LweI GCATC 5 cut(s) 551, 664, 836, 1042, 1111
MabI ACCWGGT 1 cut(s) 994
MaeII ACGT 2 cut(s) 177, 246
MaeIII GTNAC 1 cut(s) 863
MalI GATC 8 cut(s) 48, 215, 363, 378, 462, 483, 726, 835
MboI GATC 8 cut(s) 46, 213, 361, 376, 460, 481, 724, 833
MfeI CAATTG 1 cut(s) 1278
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 6 cut(s) 712, 780, 814, 1037, 1115, 1278
MlyI GAGTC 3 cut(s) 658, 972, 1255
Mph1103I ATGCAT 2 cut(s) 858, 880
MroXI GAANNNNTTC 2 cut(s) 73, 752
MseI TTAA 4 cut(s) 558, 930, 971, 978
MslI CAYNNNNRTG 4 cut(s) 630, 1083, 1131, 1155
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 7 cut(s) 170, 278, 333, 356, 374, 1111, 1298
MspR9I CCNGG 6 cut(s) 98, 218, 996, 1111, 1299, 1332
MunI CAATTG 1 cut(s) 1278
MvaI CCWGG 4 cut(s) 98, 218, 996, 1332
MvnI CGCG 2 cut(s) 1186, 1206
MwoI GCNNNNNNNGC 4 cut(s) 140, 329, 352, 914
NciI CCSGG 2 cut(s) 1111, 1299
NdeII GATC 8 cut(s) 46, 213, 361, 376, 460, 481, 724, 833
NlaIV GGNNCC 3 cut(s) 102, 150, 252
NsiI ATGCAT 2 cut(s) 858, 880
NspI RCATGY 3 cut(s) 856, 878, 988
PaeI GCATGC 2 cut(s) 856, 878
PagI TCATGA 1 cut(s) 744
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 2 cut(s) 73, 752
PfeI GAWTC 4 cut(s) 35, 436, 893, 1103
PflFI GACNNNGTC 1 cut(s) 667
PfoI TCCNGGA 1 cut(s) 1330
PleI GAGTC 3 cut(s) 658, 971, 1255
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 3 cut(s) 658, 971, 1255
Ppu21I YACGTR 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 971
Psp6I CCWGG 4 cut(s) 96, 216, 994, 1330
PspCI CACGTG 1 cut(s) 247
PspFI CCCAGC 2 cut(s) 582, 764
PspGI CCWGG 4 cut(s) 96, 216, 994, 1330
PspN4I GGNNCC 3 cut(s) 102, 150, 252
PspPI GGNCC 5 cut(s) 4, 100, 172, 562, 1334
PstNI CAGNNNCTG 1 cut(s) 1391
PsuI RGATCY 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 586
RsaI GTAC 5 cut(s) 150, 287, 624, 787, 1232
RsaNI GTAC 5 cut(s) 149, 286, 623, 786, 1231
RseI CAYNNNNRTG 4 cut(s) 630, 1083, 1131, 1155
SaqAI TTAA 4 cut(s) 558, 930, 971, 978
Sau3AI GATC 8 cut(s) 46, 213, 361, 376, 460, 481, 724, 833
Sau96I GGNCC 5 cut(s) 4, 100, 172, 562, 1334
SchI GAGTC 3 cut(s) 658, 972, 1255
ScrFI CCNGG 6 cut(s) 98, 218, 996, 1111, 1299, 1332
SduI GDGCHC 1 cut(s) 255
SexAI ACCWGGT 1 cut(s) 994
SfaNI GCATC 5 cut(s) 551, 664, 836, 1042, 1111
SinI GGWCC 2 cut(s) 172, 1334
SmiMI CAYNNNNRTG 4 cut(s) 630, 1083, 1131, 1155
SphI GCATGC 2 cut(s) 856, 878
Sse9I AATT 6 cut(s) 712, 780, 814, 1037, 1115, 1278
SspI AATATT 1 cut(s) 1399
StyD4I CCNGG 6 cut(s) 96, 216, 994, 1109, 1297, 1330
TaaI ACNGT 4 cut(s) 73, 266, 595, 1274
TaiI ACGT 2 cut(s) 180, 249
TaqI TCGA 3 cut(s) 885, 1192, 1246
TasI AATT 6 cut(s) 712, 780, 814, 1037, 1115, 1278
TatI WGTACW 1 cut(s) 622
TauI GCSGC 7 cut(s) 87, 134, 349, 352, 355, 799, 1209
TfiI GAWTC 4 cut(s) 35, 436, 893, 1103
Tru1I TTAA 4 cut(s) 558, 930, 971, 978
Tru9I TTAA 4 cut(s) 558, 930, 971, 978
TscAI CASTG 2 cut(s) 150, 463
TseI GCWGC 4 cut(s) 320, 383, 761, 1294
TspDTI ATGAA 7 cut(s) 429, 487, 642, 761, 906, 1080, 1149
TspRI CASTG 2 cut(s) 150, 463
Tth111I GACNNNGTC 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 172, 1334
VspI ATTAAT 1 cut(s) 971
XapI RAATTY 1 cut(s) 712
XceI RCATGY 3 cut(s) 856, 878, 988
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 2 cut(s) 73, 752
Zsp2I ATGCAT 2 cut(s) 858, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.