Rorug01G0454300

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012384
Physical Location & Seq
Reverse (-)
54920092 .. 54921464
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0454300.1

Sequence Viewer

Length: 570 bp
ATGAACTTAGAAGAGCTCAAGGAAAGCTTCAAGGAACTGAGAATCATTAGCGAAACGCAAGAAAAACGTGTATGGTACCACGAGACAAGAGCTCAGAACTTAATAATCGCTTATGTTCTGCTGCAAGGCTTGTTTTTCATAGGGATTGTACAAGCACAAGGCTCATCCTCATCGTCACCACCTTCCAGTACTCCCAGAAATCAATGGTGGGTTCCCTTCTCCATGATACTAGTTTCATCTGTAGTCTTCTTCATGGCTTTCCTAGATGCTGTGACTATGTTTTATAGGACCCAGTACCATCTAGATATGAACTATATGGAGCAGGACCTCATATTCAAGAAGATACATGAAGCCAAACATCCACCTGCAGCTAGTTATAAGCTCAGTCATTCCATCAAGATAGAAAAGTGCAGTGGTCATGAACAAGAAGTGCCTACAGAGCATGAAACTGTAAGACCTAATGTCTTTCAGCTCTTCAAACGCAAGGTTTATATTTACTTTACAGCTCTGGGTTTGTTCGCTTTCACTGTAATTCAGTTATACGCTTGCCGCTTGTTCTATATAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

189

Amino Acids

22.26

Weight (kDa)

8.8

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43970 AT2G43970
fragaria_vesca FvH4_1g00200
malus_domestica MD00G1087300.v1.1 MD15G1143100.v1.1
prunus_persica Prupe.7G269900_v2.0.a1 Prupe.7G269900_v2.0.a1
pyrus_communis pycom15g12920 pycom290g00200
rosa_chinensis RchiOBHm_Chr2g0084471
rosa_laevigata RLG00000015621
rosa_multiflora Rmu_sc0009404.1_g000001
rosa_roxburghii Rroxscaffold_2G00156030
rosa_rugosa Rorug01G0454300
rosa_samantha Rh2AG002400 Rh2BG002000 Rh2CG002500 Rh2DG002500
rosa_wichuraiana Rw2G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AarI CACCTGC 1 cut(s) 373
Acc36I ACCTGC 1 cut(s) 373
Acc65I GGTACC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 75
AciI CCGC 1 cut(s) 550
AfaI GTAC 4 cut(s) 77, 150, 190, 296
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 3 cut(s) 31, 337, 478
AhdI GACNNNNNGTC 1 cut(s) 461
AhlI ACTAGT 1 cut(s) 229
AluBI AGCT 7 cut(s) 16, 27, 92, 371, 382, 472, 506
AluI AGCT 7 cut(s) 16, 27, 92, 371, 382, 472, 506
Alw21I GWGCWC 2 cut(s) 18, 94
Alw26I GTCTC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 121, 368
Asp718I GGTACC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 288, 325
AsuHPI GGTGA 1 cut(s) 168
AvaII GGWCC 2 cut(s) 288, 325
BanI GGYRCC 1 cut(s) 75
BanII GRGCYC 2 cut(s) 18, 94
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 18, 94
BbvI GCAGC 2 cut(s) 108, 380
BccI CCATC 2 cut(s) 306, 401
BcoDI GTCTC 1 cut(s) 77
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 4 cut(s) 230, 263, 302, 372
BfmI CTRYAG 3 cut(s) 240, 366, 435
BfuAI ACCTGC 1 cut(s) 373
BisI GCNGC 3 cut(s) 122, 369, 550
BlsI GCNGC 3 cut(s) 123, 370, 551
BmcAI AGTACT 1 cut(s) 190
Bme18I GGWCC 2 cut(s) 288, 325
BmeRI GACNNNNNGTC 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 288, 325
BmiI GGNNCC 3 cut(s) 77, 213, 290
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 186, 292
BseGI GGATG 2 cut(s) 164, 358
BseMII CTCAG 3 cut(s) 29, 107, 397
BseNI ACTGG 2 cut(s) 186, 292
BseXI GCAGC 2 cut(s) 108, 380
BsgI GTGCAG 1 cut(s) 430
BshNI GGYRCC 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 18, 94
BsmAI GTCTC 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 18, 94
Bsp1407I TGTACA 1 cut(s) 148
BspACI CCGC 1 cut(s) 550
BspCNI CTCAG 3 cut(s) 30, 106, 396
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 77, 213, 290
BspMAI CTGCAG 1 cut(s) 370
BspMI ACCTGC 1 cut(s) 373
BspQI GCTCTTC 2 cut(s) 6, 479
BspT107I GGYRCC 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 148
BsrI ACTGG 2 cut(s) 186, 292
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 451, 529
Bst6I CTCTTC 2 cut(s) 6, 479
BstAUI TGTACA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 4 cut(s) 7, 38, 93, 383
BstF5I GGATG 2 cut(s) 164, 358
BstMAI GTCTC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstSFI CTRYAG 3 cut(s) 240, 366, 435
BstV1I GCAGC 2 cut(s) 108, 380
BstV2I GAAGAC 1 cut(s) 238
BtsCI GGATG 2 cut(s) 164, 358
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 2 cut(s) 418, 525
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 547
CciI TCATGA 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 288, 325
Csp6I GTAC 4 cut(s) 76, 149, 189, 295
CviAII CATG 5 cut(s) 223, 253, 347, 419, 443
CviQI GTAC 4 cut(s) 76, 149, 189, 295
DdeI CTNAG 4 cut(s) 7, 38, 93, 383
DriI GACNNNNNGTC 1 cut(s) 461
Eam1104I CTCTTC 2 cut(s) 6, 479
Eam1105I GACNNNNNGTC 1 cut(s) 461
EarI CTCTTC 2 cut(s) 6, 479
Ecl136II GAGCTC 2 cut(s) 16, 92
Eco24I GRGCYC 2 cut(s) 18, 94
Eco47I GGWCC 2 cut(s) 288, 325
Eco53kI GAGCTC 2 cut(s) 16, 92
EcoICRI GAGCTC 2 cut(s) 16, 92
EcoO109I RGGNCCY 2 cut(s) 288, 325
EcoT38I GRGCYC 2 cut(s) 18, 94
FaeI CATG 5 cut(s) 226, 256, 350, 422, 446
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 5 cut(s) 222, 252, 346, 418, 442
Fnu4HI GCNGC 3 cut(s) 122, 369, 550
FokI GGATG 2 cut(s) 151, 345
FriOI GRGCYC 2 cut(s) 18, 94
Fsp4HI GCNGC 3 cut(s) 122, 369, 550
FspBI CTAG 4 cut(s) 230, 263, 302, 372
GluI GCNGC 3 cut(s) 122, 369, 550
Hin1II CATG 5 cut(s) 226, 256, 350, 422, 446
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 1 cut(s) 42
HphI GGTGA 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 4 cut(s) 302, 337, 397, 419
HpyAV CCTTC 2 cut(s) 192, 226
HpyCH4III ACNGT 2 cut(s) 451, 529
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 124, 368, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 4 cut(s) 7, 38, 93, 383
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 5 cut(s) 226, 256, 350, 422, 446
KpnI GGTACC 1 cut(s) 79
LguI GCTCTTC 2 cut(s) 6, 479
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 6 cut(s) 199, 208, 305, 308, 378, 494
Lsp1109I GCAGC 2 cut(s) 108, 380
LweI GCATC 1 cut(s) 256
MaeI CTAG 4 cut(s) 230, 263, 302, 372
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 2 cut(s) 174, 271
MboII GAAGA 5 cut(s) 23, 238, 241, 352, 466
MhlI GDGCHC 2 cut(s) 18, 94
MluCI AATT 1 cut(s) 531
MnlI CCTC 2 cut(s) 178, 338
MseI TTAA 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 439
NlaIII CATG 5 cut(s) 226, 256, 350, 422, 446
NlaIV GGNNCC 3 cut(s) 77, 213, 290
NmuCI GTSAC 2 cut(s) 174, 271
PagI TCATGA 1 cut(s) 418
PaqCI CACCTGC 1 cut(s) 373
PciSI GCTCTTC 2 cut(s) 6, 479
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 123, 370, 551
PpuMI RGGWCCY 2 cut(s) 288, 325
PsiI TTATAA 1 cut(s) 378
Psp124BI GAGCTC 2 cut(s) 18, 94
Psp5II RGGWCCY 2 cut(s) 288, 325
PspN4I GGNNCC 3 cut(s) 77, 213, 290
PspPI GGNCC 2 cut(s) 288, 325
PspPPI RGGWCCY 2 cut(s) 288, 325
PstI CTGCAG 1 cut(s) 370
RsaI GTAC 4 cut(s) 77, 150, 190, 296
RsaNI GTAC 4 cut(s) 76, 149, 189, 295
SacI GAGCTC 2 cut(s) 18, 94
SapI GCTCTTC 2 cut(s) 6, 479
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 3 cut(s) 122, 369, 550
Sau96I GGNCC 2 cut(s) 288, 325
ScaI AGTACT 1 cut(s) 190
SduI GDGCHC 2 cut(s) 18, 94
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 3 cut(s) 240, 366, 435
SinI GGWCC 2 cut(s) 288, 325
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 1 cut(s) 531
SsiI CCGC 1 cut(s) 550
SspMI CTAG 4 cut(s) 230, 263, 302, 372
SstI GAGCTC 2 cut(s) 18, 94
TaaI ACNGT 2 cut(s) 451, 529
TaiI ACGT 1 cut(s) 70
TasI AATT 1 cut(s) 531
TatI WGTACW 2 cut(s) 148, 188
TauI GCSGC 1 cut(s) 552
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 2 cut(s) 418, 532
TseFI GTSAC 2 cut(s) 174, 271
TseI GCWGC 2 cut(s) 121, 368
Tsp45I GTSAC 2 cut(s) 174, 271
TspDTI ATGAA 8 cut(s) 17, 127, 225, 241, 323, 363, 435, 459
TspRI CASTG 2 cut(s) 418, 532
VpaK11BI GGWCC 2 cut(s) 288, 325
XbaI TCTAGA 1 cut(s) 301
XspI CTAG 4 cut(s) 230, 263, 302, 372
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.