Rh2DG002500

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012384
Physical Location & Seq
Reverse (-)
174885 .. 180114
5230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG002500.1

Sequence Viewer

Length: 1269 bp
ATGGCCCAAGAAGAAGGTGAACCCGCACTCTCCGATTCTCTATTAGATCCATCTCTATCTCTCTCCCGAACCGTTTCCTTTAGCCGCCTCAATGCCCAGGCCCCCGAGTTCGTCCCCAATCGCACCTCCGCCGCTCCACCCGCAGTGGTACCACCTCCTCCTGTCGCTCAGGTCCACGTCTACTCTCCGCCTCCCACGCCTTTCCATGTTCCGATCCAGGTCGTCCCTCCTCCTCCGCCTCCTCACGTGGTGCCCGTCCATCACCGCCATCACTTGCCGGTTCAGTACCATCATCATCATCAGTATTACGCTGCTGGATTTGCCGGAGACCAAGAGCCGCCGCCGCCGCCAGAGGATCAACCTCCGCCGGATCATGCTGCCTCCTCCAAGTCTCACAAGCTTTCCGATGAAGCCACTTCCAAGATTTTGAATCAGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCTGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCGTAAGTAGTCATTCCCAGCTTGCAACTGTATTGCGGAACTCCTCAAAGCTTGTAGTACATGAAGATGGGAAGAAGGTCAGACGTCAGCATCCCCTGACTCAATCAGATATGGAAGAGTTGCAATCTCGCATTGTTGTTGCTGAAAATTTGCCTGAGGATCATTGCCACCAAAACCTCATGAAGATTTTCTCTGCTGCTGGGAGTGTGAGGACAATTCGTACCTGCCAGCCGCAAACCTCAAATAGTAATTCTTCCTCAGCATCCAGATCAGCAAAAGCAGATGGCATGCATTTCAGTAACAAGTTGCATGCATTTGTGGAATATGAATCCCCTGAGCTGGCGGAGAAAGCTGTGGCCGAACTTAATGATGAGGGGAACTGGAGGAGTGGACTTAGAGTCCGATTAATGCTTAAACGCATGGTATGCCAAAATATGGTTCCTTATTGTGTAGTTCAGTTCCAGTTCCTGAGATTATCCTTTTCCGTCCAAATAAAAAAGGAATGGCCATATTGTTTGTGTAATTCTTTGAAGTTCCTGAAATTTATGGTCAAAATTAATAGAAATTGTTGGCTTATTGTTCAAATTCAAGAAAAAAGCTGGTTTGTTGGTCAATTTTTTCGTTCTATGCTGAATAAATTGTCAATTAGTGTATGTAATTATACGATCAACTGCAGGCTTGTAAGTATGCTTTCTGGTATATTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

422

Amino Acids

47.52

Weight (kDa)

8.64

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 142 - 200 2.7e-20 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43970 AT2G43970
fragaria_vesca FvH4_1g00200
malus_domestica MD00G1087300.v1.1 MD15G1143100.v1.1
prunus_persica Prupe.7G269900_v2.0.a1 Prupe.7G269900_v2.0.a1
pyrus_communis pycom15g12920 pycom290g00200
rosa_chinensis RchiOBHm_Chr2g0084471
rosa_laevigata RLG00000015621
rosa_multiflora Rmu_sc0009404.1_g000001
rosa_roxburghii Rroxscaffold_2G00156030
rosa_rugosa Rorug01G0454300
rosa_samantha Rh2AG002400 Rh2BG002000 Rh2CG002500 Rh2DG002500
rosa_wichuraiana Rw2G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 646
Acc36I ACCTGC 1 cut(s) 791
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 2 cut(s) 148, 250
AccB7I CCANNNNNTGG 1 cut(s) 994
AccBSI CCGCTC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 180
AclWI GGATC 5 cut(s) 41, 208, 363, 378, 726
AcoI YGGCCR 2 cut(s) 915, 1064
AcsI RAATTY 3 cut(s) 706, 1100, 1143
AcuI CTGAAG 1 cut(s) 528
AcvI CACGTG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 643
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 4 cut(s) 150, 287, 618, 781
AfiI CCNNNNNNNGG 2 cut(s) 898, 994
AgsI TTSAA 6 cut(s) 430, 544, 1090, 1142, 1148, 1265
AhdI GACNNNNNGTC 1 cut(s) 956
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 2 cut(s) 96, 216
AjuI GAANNNNNNNTTGG 2 cut(s) 981, 1013
AluBI AGCT 7 cut(s) 400, 467, 580, 610, 898, 911, 1158
AluI AGCT 7 cut(s) 400, 467, 580, 610, 898, 911, 1158
Alw26I GTCTC 2 cut(s) 321, 396
AlwI GGATC 5 cut(s) 41, 208, 363, 378, 726
AlwNI CAGNNNCTG 1 cut(s) 1027
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 5 cut(s) 3, 99, 555, 915, 1064
ApeKI GCWGC 3 cut(s) 311, 377, 755
ApoI RAATTY 3 cut(s) 706, 1100, 1143
AseI ATTAAT 2 cut(s) 965, 1116
Asp700I GAANNNNTTC 2 cut(s) 73, 746
Asp718I GGTACC 1 cut(s) 148
AspS9I GGNCC 4 cut(s) 4, 100, 172, 556
AsuHPI GGTGA 2 cut(s) 29, 254
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 255
BalI TGGCCA 1 cut(s) 1066
BanI GGYRCC 2 cut(s) 148, 250
BbrPI CACGTG 1 cut(s) 247
BbvCI CCTCAGC 1 cut(s) 817
BbvI GCAGC 3 cut(s) 298, 364, 742
BccI CCATC 6 cut(s) 58, 267, 276, 297, 620, 836
BciT130I CCWGG 2 cut(s) 98, 218
BclI TGATCA 1 cut(s) 475
BcoDI GTCTC 2 cut(s) 321, 396
BfmI CTRYAG 1 cut(s) 1231
BfuAI ACCTGC 1 cut(s) 791
Bme1390I CCNGG 2 cut(s) 98, 218
Bme18I GGWCC 1 cut(s) 172
BmeRI GACNNNNNGTC 1 cut(s) 956
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 4 cut(s) 4, 100, 172, 556
BmiI GGNNCC 4 cut(s) 102, 150, 252, 999
BmrFI CCNGG 2 cut(s) 98, 218
BmsI GCATC 3 cut(s) 545, 658, 830
BpmI CTGGAG 1 cut(s) 961
Bpu10I CCTNAGC 3 cut(s) 168, 817, 894
BsaAI YACGTR 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 643
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 2 cut(s) 898, 994
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 944, 1021
Bse21I CCTNAGG 1 cut(s) 714
Bse3DI GCAATG 1 cut(s) 721
BseBI CCWGG 2 cut(s) 98, 218
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 649, 821
BseLI CCNNNNNNNGG 2 cut(s) 898, 994
BseMI GCAATG 1 cut(s) 721
BseMII CTCAG 5 cut(s) 182, 705, 831, 885, 1019
BseNI ACTGG 2 cut(s) 944, 1021
BseRI GAGGAG 7 cut(s) 147, 219, 222, 231, 373, 592, 958
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 3 cut(s) 298, 364, 742
BseYI CCCAGC 2 cut(s) 576, 758
BshFI GGCC 5 cut(s) 5, 101, 557, 917, 1066
BshNI GGYRCC 2 cut(s) 148, 250
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 3 cut(s) 278, 324, 368
BslFI GGGAC 2 cut(s) 98, 209
BslI CCNNNNNNNGG 2 cut(s) 898, 994
BsmAI GTCTC 2 cut(s) 321, 396
BsmFI GGGAC 2 cut(s) 98, 209
BsnI GGCC 5 cut(s) 5, 101, 557, 917, 1066
Bso31I GGTCTC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 9 cut(s) 46, 213, 355, 370, 454, 475, 718, 827, 1224
BspANI GGCC 5 cut(s) 5, 101, 557, 917, 1066
BspCNI CTCAG 5 cut(s) 181, 706, 830, 886, 1020
BspHI TCATGA 1 cut(s) 738
BspLI GGNNCC 4 cut(s) 102, 150, 252, 999
BspMAI CTGCAG 1 cut(s) 1235
BspMI ACCTGC 1 cut(s) 791
BspPI GGATC 5 cut(s) 41, 208, 363, 378, 726
BspT107I GGYRCC 2 cut(s) 148, 250
BspTNI GGTCTC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 721
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 944, 1021
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 9 cut(s) 46, 213, 355, 370, 454, 475, 718, 827, 1224
BssNI GRCGYC 1 cut(s) 643
Bst2UI CCWGG 2 cut(s) 98, 218
Bst4CI ACNGT 2 cut(s) 73, 589
Bst6I CTCTTC 1 cut(s) 669
BstACI GRCGYC 1 cut(s) 643
BstAPI GCANNNNNTGC 1 cut(s) 984
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 6 cut(s) 582, 788, 848, 870, 900, 1235
BstDEI CTNAG 7 cut(s) 168, 463, 714, 817, 894, 953, 1028
BstF5I GGATG 2 cut(s) 649, 821
BstKTI GATC 9 cut(s) 49, 216, 358, 373, 457, 478, 721, 830, 1227
BstMAI GTCTC 2 cut(s) 321, 396
BstMBI GATC 9 cut(s) 46, 213, 355, 370, 454, 475, 718, 827, 1224
BstMWI GCNNNNNNNGC 7 cut(s) 140, 196, 320, 343, 346, 908, 984
BstNI CCWGG 2 cut(s) 98, 218
BstNSI RCATGY 2 cut(s) 850, 872
BstSCI CCNGG 2 cut(s) 96, 216
BstSFI CTRYAG 1 cut(s) 1231
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 3 cut(s) 298, 364, 742
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 5 cut(s) 5, 101, 557, 917, 1066
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 2 cut(s) 649, 821
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 457
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 6 cut(s) 582, 788, 848, 870, 900, 1235
CaiI CAGNNNCTG 1 cut(s) 1027
CciI TCATGA 1 cut(s) 738
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 4 cut(s) 4, 100, 172, 556
Csp6I GTAC 4 cut(s) 149, 286, 617, 780
CviAII CATG 7 cut(s) 206, 374, 620, 739, 847, 869, 979
CviQI GTAC 4 cut(s) 149, 286, 617, 780
DdeI CTNAG 7 cut(s) 168, 463, 714, 817, 894, 953, 1028
DpnI GATC 9 cut(s) 48, 215, 357, 372, 456, 477, 720, 829, 1226
DpnII GATC 9 cut(s) 46, 213, 355, 370, 454, 475, 718, 827, 1224
DraIII CACNNNGTG 1 cut(s) 250
DriI GACNNNNNGTC 1 cut(s) 956
EaeI YGGCCR 2 cut(s) 915, 1064
Eam1104I CTCTTC 1 cut(s) 669
Eam1105I GACNNNNNGTC 1 cut(s) 956
EarI CTCTTC 1 cut(s) 669
EciI GGCGGA 5 cut(s) 118, 177, 225, 354, 917
Eco31I GGTCTC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 528
Eco72I CACGTG 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 100, 556
EcoRII CCWGG 2 cut(s) 96, 216
EcoT22I ATGCAT 2 cut(s) 852, 874
FaeI CATG 7 cut(s) 209, 377, 623, 742, 850, 872, 982
FaqI GGGAC 2 cut(s) 98, 209
FatI CATG 7 cut(s) 205, 373, 619, 738, 846, 868, 978
FauI CCCGC 2 cut(s) 31, 148
FbaI TGATCA 1 cut(s) 475
FblI GTMKAC 1 cut(s) 180
FokI GGATG 2 cut(s) 636, 808
GsaI CCCAGC 2 cut(s) 580, 762
GsuI CTGGAG 1 cut(s) 961
HaeIII GGCC 5 cut(s) 5, 101, 557, 917, 1066
HapII CCGG 3 cut(s) 278, 324, 368
Hin1I GRCGYC 1 cut(s) 643
Hin1II CATG 7 cut(s) 209, 377, 623, 742, 850, 872, 982
HindIII AAGCTT 2 cut(s) 398, 608
HinfI GANTC 5 cut(s) 35, 430, 658, 887, 957
HpaII CCGG 3 cut(s) 278, 324, 368
HphI GGTGA 2 cut(s) 29, 254
Hpy166II GTNNAC 4 cut(s) 20, 175, 181, 950
Hpy188I TCNGA 7 cut(s) 34, 213, 406, 459, 641, 667, 962
Hpy188III TCNNGA 7 cut(s) 66, 544, 739, 825, 1027, 1096, 1148
Hpy8I GTNNAC 4 cut(s) 20, 175, 181, 950
HpyAV CCTTC 3 cut(s) 8, 503, 628
HpyCH4III ACNGT 2 cut(s) 73, 589
HpyCH4IV ACGT 3 cut(s) 177, 246, 643
HpyCH4V TGCA 7 cut(s) 536, 584, 682, 850, 868, 872, 1233
HpyF10VI GCNNNNNNNGC 7 cut(s) 140, 196, 320, 343, 346, 908, 984
HpyF3I CTNAG 7 cut(s) 168, 463, 714, 817, 894, 953, 1028
HpySE526I ACGT 3 cut(s) 177, 246, 643
Hsp92I GRCGYC 1 cut(s) 643
Hsp92II CATG 7 cut(s) 209, 377, 623, 742, 850, 872, 982
KpnI GGTACC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 9 cut(s) 46, 213, 355, 370, 454, 475, 718, 827, 1224
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 3 cut(s) 298, 364, 742
LweI GCATC 3 cut(s) 545, 658, 830
MaeII ACGT 3 cut(s) 177, 246, 643
MaeIII GTNAC 1 cut(s) 857
MalI GATC 9 cut(s) 48, 215, 357, 372, 456, 477, 720, 829, 1226
MbiI CCGCTC 1 cut(s) 134
MboI GATC 9 cut(s) 46, 213, 355, 370, 454, 475, 718, 827, 1224
MboII GAAGA 7 cut(s) 23, 559, 635, 643, 686, 754, 804
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 255
MlsI TGGCCA 1 cut(s) 1066
MluNI TGGCCA 1 cut(s) 1066
MlyI GAGTC 2 cut(s) 652, 966
Mox20I TGGCCA 1 cut(s) 1066
Mph1103I ATGCAT 2 cut(s) 852, 874
MroXI GAANNNNTTC 2 cut(s) 73, 746
MscI TGGCCA 1 cut(s) 1066
MseI TTAA 5 cut(s) 552, 924, 965, 972, 1116
MslI CAYNNNNRTG 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 1066
MspI CCGG 3 cut(s) 278, 324, 368
MspR9I CCNGG 2 cut(s) 98, 218
MvaI CCWGG 2 cut(s) 98, 218
MwoI GCNNNNNNNGC 7 cut(s) 140, 196, 320, 343, 346, 908, 984
NdeII GATC 9 cut(s) 46, 213, 355, 370, 454, 475, 718, 827, 1224
NlaIII CATG 7 cut(s) 209, 377, 623, 742, 850, 872, 982
NlaIV GGNNCC 4 cut(s) 102, 150, 252, 999
NsiI ATGCAT 2 cut(s) 852, 874
NspI RCATGY 2 cut(s) 850, 872
PaeI GCATGC 2 cut(s) 850, 872
PagI TCATGA 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 2 cut(s) 73, 746
PfeI GAWTC 3 cut(s) 35, 430, 887
PflMI CCANNNNNTGG 1 cut(s) 994
PleI GAGTC 2 cut(s) 652, 965
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 2 cut(s) 652, 965
Ppu21I YACGTR 1 cut(s) 247
PshBI ATTAAT 2 cut(s) 965, 1116
Psp6I CCWGG 2 cut(s) 96, 216
PspCI CACGTG 1 cut(s) 247
PspFI CCCAGC 2 cut(s) 576, 758
PspGI CCWGG 2 cut(s) 96, 216
PspN4I GGNNCC 4 cut(s) 102, 150, 252, 999
PspPI GGNCC 4 cut(s) 4, 100, 172, 556
PstI CTGCAG 1 cut(s) 1235
PstNI CAGNNNCTG 1 cut(s) 1027
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 4 cut(s) 150, 287, 618, 781
RsaNI GTAC 4 cut(s) 149, 286, 617, 780
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 5 cut(s) 552, 924, 965, 972, 1116
Sau3AI GATC 9 cut(s) 46, 213, 355, 370, 454, 475, 718, 827, 1224
Sau96I GGNCC 4 cut(s) 4, 100, 172, 556
SchI GAGTC 2 cut(s) 652, 966
ScrFI CCNGG 2 cut(s) 98, 218
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 3 cut(s) 545, 658, 830
SfcI CTRYAG 1 cut(s) 1231
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 624
SphI GCATGC 2 cut(s) 850, 872
StyD4I CCNGG 2 cut(s) 96, 216
TaaI ACNGT 2 cut(s) 73, 589
TaiI ACGT 3 cut(s) 180, 249, 646
TatI WGTACW 1 cut(s) 616
TauI GCSGC 7 cut(s) 87, 134, 340, 343, 346, 349, 793
TfiI GAWTC 3 cut(s) 35, 430, 887
Tru1I TTAA 5 cut(s) 552, 924, 965, 972, 1116
Tru9I TTAA 5 cut(s) 552, 924, 965, 972, 1116
TscAI CASTG 2 cut(s) 150, 457
TseI GCWGC 3 cut(s) 311, 377, 755
TspDTI ATGAA 5 cut(s) 423, 481, 636, 755, 900
TspGWI ACGGA 1 cut(s) 1033
TspRI CASTG 2 cut(s) 150, 457
Van91I CCANNNNNTGG 1 cut(s) 994
VpaK11BI GGWCC 1 cut(s) 172
VspI ATTAAT 2 cut(s) 965, 1116
XapI RAATTY 3 cut(s) 706, 1100, 1143
XceI RCATGY 2 cut(s) 850, 872
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 2 cut(s) 73, 746
ZraI GACGTC 1 cut(s) 644
Zsp2I ATGCAT 2 cut(s) 852, 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.