Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009404.1

Orthogroup ID

OG0012384

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3128

Gene Structure 3128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009404.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

tatttcagtgatctgaacttagctactactgatcatcttatgaggttcataaacaaagaccctgaaggatttgtgccaacatctgttgttgcatctttcaagaagattaaggccctcgtaagtagtcattcccagcttgcaactgtattgcggaactcctcaaagcttgtagtacatgaagatgggaagaaggtcagacgtcagcatcccctgactcaatcagatatggaagagttgcaatctcgcattgttgttgctgaaaatttgcctgaggatcattgccaccaaaacctcatgaagattttctctgctgctgggagtgtgaggacaattcgtacctgccagccgcaaacctcaaatagtaattcttcctcagcatccagatcagcaaaagcagatggcatgcatttcagtaacaagttgcatgcatttgtggaatatgaatcccctgagctggcggagaaagctgtggccgaacttaatgatgaggggaactggaggagtggacttagagtccgattaatgcttaaacgcatgtcaaaacctggtcaagtgcgagggaaaaaggggcaggatggggaactgcaattagaggaagaggatgcttctacacatgaacaaatacatcatgccaatgagaaacaatcagaagattcttcccggcaatttgatgcccattcacatgaacaaggagaggaacatgggaatgataaggagggcgggcaaaggaaagcgcgtaatcgacaaggaggacgcggcaaggggcgtgggaggggtcaataccaccacaataatcgaaatcatgttgggactcctcacaacagttcaattggtagtagtgagcagccgggtataggtgtaggtgtagccagacagcctcctggacctcgtatgccagatggcacaagaggatttgcaatgggtcgggggaggccagttgctgttaatattgcacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

La PAM2 RRM_1

Protein Analysis

319

Amino Acids

35.25

Weight (kDa)

9.41

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43970 AT2G43970
fragaria_vesca	FvH4_1g00200
malus_domestica	MD00G1087300.v1.1 MD15G1143100.v1.1
prunus_persica	Prupe.7G269900_v2.0.a1 Prupe.7G269900_v2.0.a1
pyrus_communis	pycom15g12920 pycom290g00200
rosa_chinensis	RchiOBHm_Chr2g0084471
rosa_laevigata	RLG00000015621
rosa_multiflora	Rmu_sc0009404.1_g000001
rosa_roxburghii	Rroxscaffold_2G00156030
rosa_rugosa	Rorug01G0454300
rosa_samantha	Rh2AG002400 Rh2BG002000 Rh2CG002500 Rh2DG002500
rosa_wichuraiana	Rw2G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	347
AccII	CGCG	2 cut(s)	736, 756
AciI	CCGC	5 cut(s)	151, 347, 458, 720, 756
AclWI	GGATC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	199
AfaI	GTAC	2 cut(s)	174, 337
AfiI	CCNNNNNNNGG	2 cut(s)	454, 854
AgsI	TTSAA	2 cut(s)	100, 828
AhdI	GACNNNNNGTC	1 cut(s)	512
AjnI	CCWGG	2 cut(s)	544, 880
AluBI	AGCT	5 cut(s)	23, 136, 166, 454, 467
AluI	AGCT	5 cut(s)	23, 136, 166, 454, 467
AlwI	GGATC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	941
AoxI	GGCC	3 cut(s)	111, 471, 932
ApeKI	GCWGC	2 cut(s)	311, 844
ApoI	RAATTY	1 cut(s)	262
AseI	ATTAAT	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	736
AspS9I	GGNCC	2 cut(s)	112, 884
AsuC2I	CCSGG	2 cut(s)	661, 849
AvaII	GGWCC	1 cut(s)	884
AxyI	CCTNAGG	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	298, 856
BccI	CCATC	4 cut(s)	176, 392, 569, 893
BciT130I	CCWGG	2 cut(s)	546, 882
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	2 cut(s)	661, 849
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	4 cut(s)	312, 347, 757, 845
BlsI	GCNGC	4 cut(s)	313, 348, 758, 846
Bme1390I	CCNGG	4 cut(s)	546, 661, 849, 882
Bme18I	GGWCC	1 cut(s)	884
BmeRI	GACNNNNNGTC	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	112, 884
BmrFI	CCNGG	4 cut(s)	546, 661, 849, 882
BmsI	GCATC	5 cut(s)	101, 214, 386, 592, 661
BpmI	CTGGAG	1 cut(s)	517
Bpu10I	CCTNAGC	2 cut(s)	373, 450
BpuMI	CCSGG	2 cut(s)	661, 849
BsaHI	GRCGYC	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 854
Bse1I	ACTGG	2 cut(s)	500, 935
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	277, 924
BseBI	CCWGG	2 cut(s)	546, 882
BseGI	GGATG	4 cut(s)	205, 377, 580, 607
BseLI	CCNNNNNNNGG	2 cut(s)	454, 854
BseMI	GCAATG	2 cut(s)	277, 924
BseMII	CTCAG	3 cut(s)	261, 387, 441
BseNI	ACTGG	2 cut(s)	500, 935
BseRI	GAGGAG	3 cut(s)	148, 514, 804
BseXI	GCAGC	2 cut(s)	298, 856
BseYI	CCCAGC	2 cut(s)	132, 314
Bsh1236I	CGCG	2 cut(s)	736, 756
BshFI	GGCC	3 cut(s)	113, 473, 934
BsiSI	CCGG	2 cut(s)	661, 848
BslFI	GGGAC	1 cut(s)	823
BslI	CCNNNNNNNGG	2 cut(s)	454, 854
BsmFI	GGGAC	1 cut(s)	823
BsnI	GGCC	3 cut(s)	113, 473, 934
Bsp143I	GATC	4 cut(s)	10, 31, 274, 383
BspACI	CCGC	5 cut(s)	151, 347, 458, 720, 756
BspANI	GGCC	3 cut(s)	113, 473, 934
BspCNI	CTCAG	3 cut(s)	262, 386, 442
BspFNI	CGCG	2 cut(s)	736, 756
BspHI	TCATGA	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	282
BsrDI	GCAATG	2 cut(s)	277, 924
BsrI	ACTGG	2 cut(s)	500, 935
BssMI	GATC	4 cut(s)	10, 31, 274, 383
BssNI	GRCGYC	1 cut(s)	199
Bst2UI	CCWGG	2 cut(s)	546, 882
Bst4CI	ACNGT	2 cut(s)	145, 824
Bst6I	CTCTTC	2 cut(s)	225, 591
BstACI	GRCGYC	1 cut(s)	199
BstC8I	GCNNGC	6 cut(s)	138, 344, 404, 426, 456, 722
BstDEI	CTNAG	5 cut(s)	19, 270, 373, 450, 509
BstF5I	GGATG	4 cut(s)	205, 377, 580, 607
BstFNI	CGCG	2 cut(s)	736, 756
BstHHI	GCGC	1 cut(s)	736
BstKTI	GATC	4 cut(s)	13, 34, 277, 386
BstMBI	GATC	4 cut(s)	10, 31, 274, 383
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	2 cut(s)	546, 882
BstNSI	RCATGY	3 cut(s)	406, 428, 538
BstSCI	CCNGG	4 cut(s)	544, 659, 847, 880
BstUI	CGCG	2 cut(s)	736, 756
BstV1I	GCAGC	2 cut(s)	298, 856
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	113, 473, 934
BtsCI	GGATG	4 cut(s)	205, 377, 580, 607
BtsIMutI	CAGTG	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	6 cut(s)	138, 344, 404, 426, 456, 722
CaiI	CAGNNNCTG	1 cut(s)	941
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	736
Cfr13I	GGNCC	2 cut(s)	112, 884
CseI	GACGC	1 cut(s)	762
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	173, 336
CspCI	CAANNNNNGTGG	2 cut(s)	748, 783
CviQI	GTAC	2 cut(s)	173, 336
DdeI	CTNAG	5 cut(s)	19, 270, 373, 450, 509
DpnI	GATC	4 cut(s)	12, 33, 276, 385
DpnII	GATC	4 cut(s)	10, 31, 274, 383
DriI	GACNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	2 cut(s)	225, 591
Eam1105I	GACNNNNNGTC	1 cut(s)	512
EarI	CTCTTC	2 cut(s)	225, 591
EciI	GGCGGA	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	884
Eco57I	CTGAAG	1 cut(s)	84
Eco81I	CCTNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	544, 880
EcoT22I	ATGCAT	2 cut(s)	408, 430
FaqI	GGGAC	1 cut(s)	823
FauI	CCCGC	1 cut(s)	713
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	4 cut(s)	312, 347, 757, 845
FokI	GGATG	4 cut(s)	192, 364, 587, 614
Fsp4HI	GCNGC	4 cut(s)	312, 347, 757, 845
GlaI	GCGC	1 cut(s)	735
GluI	GCNGC	4 cut(s)	312, 347, 757, 845
GsaI	CCCAGC	2 cut(s)	136, 318
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	3 cut(s)	113, 473, 934
HapII	CCGG	2 cut(s)	661, 848
HgaI	GACGC	1 cut(s)	762
HhaI	GCGC	1 cut(s)	736
Hin1I	GRCGYC	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	734
HinP1I	GCGC	1 cut(s)	734
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	5 cut(s)	214, 443, 513, 653, 811
HpaII	CCGG	2 cut(s)	661, 848
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	5 cut(s)	15, 197, 223, 518, 649
Hpy188III	TCNNGA	3 cut(s)	100, 295, 381
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	2 cut(s)	59, 184
HpyCH4III	ACNGT	2 cut(s)	145, 824
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	9 cut(s)	92, 140, 238, 406, 424, 428, 586, 917, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	5 cut(s)	19, 270, 373, 450, 509
HpySE526I	ACGT	1 cut(s)	199
Hsp92I	GRCGYC	1 cut(s)	199
HspAI	GCGC	1 cut(s)	734
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	10, 31, 274, 383
Lsp1109I	GCAGC	2 cut(s)	298, 856
LweI	GCATC	5 cut(s)	101, 214, 386, 592, 661
MabI	ACCWGGT	1 cut(s)	544
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	4 cut(s)	12, 33, 276, 385
MboI	GATC	4 cut(s)	10, 31, 274, 383
MboII	GAAGA	9 cut(s)	115, 191, 199, 242, 310, 360, 608, 648, 662
MfeI	CAATTG	1 cut(s)	828
MluCI	AATT	6 cut(s)	262, 330, 364, 587, 665, 828
MlyI	GAGTC	3 cut(s)	208, 522, 805
Mph1103I	ATGCAT	2 cut(s)	408, 430
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	5 cut(s)	108, 480, 521, 528, 945
MslI	CAYNNNNRTG	4 cut(s)	180, 633, 681, 705
MspI	CCGG	2 cut(s)	661, 848
MspR9I	CCNGG	4 cut(s)	546, 661, 849, 882
MunI	CAATTG	1 cut(s)	828
MvaI	CCWGG	2 cut(s)	546, 882
MvnI	CGCG	2 cut(s)	736, 756
MwoI	GCNNNNNNNGC	1 cut(s)	464
NciI	CCSGG	2 cut(s)	661, 849
NdeII	GATC	4 cut(s)	10, 31, 274, 383
NsiI	ATGCAT	2 cut(s)	408, 430
NspI	RCATGY	3 cut(s)	406, 428, 538
PaeI	GCATGC	2 cut(s)	406, 428
PagI	TCATGA	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	443, 653
PfoI	TCCNGGA	1 cut(s)	880
PkrI	GCNGC	4 cut(s)	313, 348, 758, 846
PleI	GAGTC	3 cut(s)	208, 521, 805
PpsI	GAGTC	3 cut(s)	208, 521, 805
PshBI	ATTAAT	1 cut(s)	521
Psp6I	CCWGG	2 cut(s)	544, 880
PspFI	CCCAGC	2 cut(s)	132, 314
PspGI	CCWGG	2 cut(s)	544, 880
PspPI	GGNCC	2 cut(s)	112, 884
PstNI	CAGNNNCTG	1 cut(s)	941
RsaI	GTAC	2 cut(s)	174, 337
RsaNI	GTAC	2 cut(s)	173, 336
RseI	CAYNNNNRTG	4 cut(s)	180, 633, 681, 705
SaqAI	TTAA	5 cut(s)	108, 480, 521, 528, 945
SatI	GCNGC	4 cut(s)	312, 347, 757, 845
Sau3AI	GATC	4 cut(s)	10, 31, 274, 383
Sau96I	GGNCC	2 cut(s)	112, 884
SchI	GAGTC	3 cut(s)	208, 522, 805
ScrFI	CCNGG	4 cut(s)	546, 661, 849, 882
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	5 cut(s)	101, 214, 386, 592, 661
SinI	GGWCC	1 cut(s)	884
SmiMI	CAYNNNNRTG	4 cut(s)	180, 633, 681, 705
SphI	GCATGC	2 cut(s)	406, 428
Sse9I	AATT	6 cut(s)	262, 330, 364, 587, 665, 828
SsiI	CCGC	5 cut(s)	151, 347, 458, 720, 756
SspI	AATATT	1 cut(s)	949
StyD4I	CCNGG	4 cut(s)	544, 659, 847, 880
TaaI	ACNGT	2 cut(s)	145, 824
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	2 cut(s)	742, 796
TasI	AATT	6 cut(s)	262, 330, 364, 587, 665, 828
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	2 cut(s)	349, 759
TfiI	GAWTC	2 cut(s)	443, 653
Tru1I	TTAA	5 cut(s)	108, 480, 521, 528, 945
Tru9I	TTAA	5 cut(s)	108, 480, 521, 528, 945
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	311, 844
TspDTI	ATGAA	6 cut(s)	37, 192, 311, 456, 630, 699
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	884
VspI	ATTAAT	1 cut(s)	521
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	3 cut(s)	406, 428, 538
XmnI	GAANNNNTTC	1 cut(s)	302
ZraI	GACGTC	1 cut(s)	200
Zsp2I	ATGCAT	2 cut(s)	408, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.