Rw2G000210

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012384
Physical Location & Seq
Reverse (-)
192125 .. 196655
4531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G000210.1

Sequence Viewer

Length: 1401 bp
ATGGCCCAAGAAGAAGGTGAACCCGCACTCTCCGATTCTCTATTAGATCCATCTCTATCTCTCTCCCGAACCGTTTCCTTTAGCCGCCTCAATGCCCAGGCCCCCGAGTTCGTCCCCAATCGCACCTCCGCCGCTCCACCCGCAGTGGTACCACCTCCTCCTGTCGCTCAGGTCCACGTCTACTCTCCGCCTCCCACGCCTTTCCATGTTCCGATCCAGGTCGTCCCTCCTCCTCCGCCTCCTCACGTGGTGCCCGTCCATCACCGCCATCACTTGCCGGTTCAGTACCATCATCATCATCAGTATTACGCTGCTGGATTTGCCGGAGACCAAGAGCCGCCGCCGCCAGAGGATCAACCTCCACCGGATCACGCTGCCTCCTCCAAGTCTCACAAGCTTTCCGATGAAGCCACTTCCAAGATTTTGAATCAGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCTGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCGTAAGTAGTCATTCCCAGCTTGCAACTGTATTGCGGAACTCCTCAAAGCTTGTAGTACATGAAGATGGGAAGAAGGTCAGACGTCAGCATCCCCTGACTCAATCAGATATGGAAGAGTTGCAATCTCGCATTGTTGTTGCTGAAAATTTGCCTGAGGATCATTGCCACCAAAACCTCATGAAGATTTTCTCTGCTGCTGGGAGTGTGAGGACAATTCGTACCTGCCAGCCGCAAACCTCAAATAGTAATTCTTCCTCAGCATCCAGATCAGCAAAAGCAGATGGCATGCATTTCAGTAACAAGTTGCATGCATTTGTGGAATATGAATCCCCTGAGCTGGCGGAGAAAGCTGTGGCCGAACTTAATGATGAGGGGAACTGGAGGAGTGGACTTAGAGTCCGATTAATGCTTAAACGCATGTCAAAACCTGGTCAAGTGCGAGGGAAAAAGGGGCAGGATGGGGAACTGCAATTAGAGGAAGAGGATGCTTCTACACATGAACAAATACATCATGCCAATGAGAAACAATCAGAAGATTCTTCCCGGCAATTTGATGCCCATTCACATGAACAAGGAGAGGAACATGGGAATGATAAGGAGGGCGGGCAAAGGAAAGCGCGTAATCGACAAGGAGGACGCGGCAAGGGGCGTGGGAGGGGTCAATACCACCACAATAATCGAAATCATGTTGGGACTCCTCACAACAGTTCAATTGGTAGTAGTGAGCAGCCGGGTATAGGTGTAGGTGTAGCCAGACAGCCTCCTGGACCTCGTATGCCAGATGGCACAAGAGGATTTGCAATGGGTCGGGGGAGGCCAGTTGCTGTTAATATTGCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

466

Amino Acids

51.24

Weight (kDa)

7.51

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 141 - 199 3.1e-20 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43970 AT2G43970
fragaria_vesca FvH4_1g00200
malus_domestica MD00G1087300.v1.1 MD15G1143100.v1.1
prunus_persica Prupe.7G269900_v2.0.a1 Prupe.7G269900_v2.0.a1
pyrus_communis pycom15g12920 pycom290g00200
rosa_chinensis RchiOBHm_Chr2g0084471
rosa_laevigata RLG00000015621
rosa_multiflora Rmu_sc0009404.1_g000001
rosa_roxburghii Rroxscaffold_2G00156030
rosa_rugosa Rorug01G0454300
rosa_samantha Rh2AG002400 Rh2BG002000 Rh2CG002500 Rh2DG002500
rosa_wichuraiana Rw2G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 643
Acc36I ACCTGC 1 cut(s) 788
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 2 cut(s) 148, 250
AccBSI CCGCTC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 180
AccII CGCG 2 cut(s) 1177, 1197
AclWI GGATC 5 cut(s) 41, 208, 360, 375, 723
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 1 cut(s) 703
AcuI CTGAAG 1 cut(s) 525
AcvI CACGTG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 640
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 4 cut(s) 150, 287, 615, 778
AfiI CCNNNNNNNGG 2 cut(s) 895, 1295
AgsI TTSAA 3 cut(s) 427, 541, 1269
AhdI GACNNNNNGTC 1 cut(s) 953
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 4 cut(s) 96, 216, 985, 1321
AluBI AGCT 6 cut(s) 397, 464, 577, 607, 895, 908
AluI AGCT 6 cut(s) 397, 464, 577, 607, 895, 908
Alw26I GTCTC 2 cut(s) 321, 393
AlwI GGATC 5 cut(s) 41, 208, 360, 375, 723
AlwNI CAGNNNCTG 1 cut(s) 1382
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 5 cut(s) 3, 99, 552, 912, 1373
ApeKI GCWGC 4 cut(s) 311, 374, 752, 1285
ApoI RAATTY 1 cut(s) 703
AseI ATTAAT 1 cut(s) 962
Asp700I GAANNNNTTC 2 cut(s) 73, 743
Asp718I GGTACC 1 cut(s) 148
AspLEI GCGC 1 cut(s) 1177
AspS9I GGNCC 5 cut(s) 4, 100, 172, 553, 1325
AsuC2I CCSGG 2 cut(s) 1102, 1290
AsuHPI GGTGA 2 cut(s) 29, 254
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 172, 1325
AxyI CCTNAGG 1 cut(s) 711
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 2 cut(s) 148, 250
BbrPI CACGTG 1 cut(s) 247
BbvCI CCTCAGC 1 cut(s) 814
BbvI GCAGC 4 cut(s) 298, 361, 739, 1297
BccI CCATC 8 cut(s) 58, 267, 276, 297, 617, 833, 1010, 1334
BciT130I CCWGG 4 cut(s) 98, 218, 987, 1323
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 2 cut(s) 1102, 1290
BcoDI GTCTC 2 cut(s) 321, 393
BfuAI ACCTGC 1 cut(s) 788
Bme1390I CCNGG 6 cut(s) 98, 218, 987, 1102, 1290, 1323
Bme18I GGWCC 2 cut(s) 172, 1325
BmeRI GACNNNNNGTC 1 cut(s) 953
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 5 cut(s) 4, 100, 172, 553, 1325
BmiI GGNNCC 3 cut(s) 102, 150, 252
BmrFI CCNGG 6 cut(s) 98, 218, 987, 1102, 1290, 1323
BmsI GCATC 5 cut(s) 542, 655, 827, 1033, 1102
BpmI CTGGAG 1 cut(s) 958
Bpu10I CCTNAGC 3 cut(s) 168, 814, 891
BpuMI CCSGG 2 cut(s) 1102, 1290
BsaAI YACGTR 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 640
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 895, 1295
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 941, 1376
Bse21I CCTNAGG 1 cut(s) 711
Bse3DI GCAATG 2 cut(s) 718, 1365
BseBI CCWGG 4 cut(s) 98, 218, 987, 1323
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 4 cut(s) 646, 818, 1021, 1048
BseLI CCNNNNNNNGG 2 cut(s) 895, 1295
BseMI GCAATG 2 cut(s) 718, 1365
BseMII CTCAG 4 cut(s) 182, 702, 828, 882
BseNI ACTGG 2 cut(s) 941, 1376
BseRI GAGGAG 8 cut(s) 147, 219, 222, 231, 370, 589, 955, 1245
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 4 cut(s) 298, 361, 739, 1297
BseYI CCCAGC 2 cut(s) 573, 755
Bsh1236I CGCG 2 cut(s) 1177, 1197
BshFI GGCC 5 cut(s) 5, 101, 554, 914, 1375
BshNI GGYRCC 2 cut(s) 148, 250
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 5 cut(s) 278, 324, 365, 1102, 1289
BslFI GGGAC 3 cut(s) 98, 209, 1264
BslI CCNNNNNNNGG 2 cut(s) 895, 1295
BsmAI GTCTC 2 cut(s) 321, 393
BsmFI GGGAC 3 cut(s) 98, 209, 1264
BsnI GGCC 5 cut(s) 5, 101, 554, 914, 1375
Bso31I GGTCTC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 8 cut(s) 46, 213, 352, 367, 451, 472, 715, 824
BspANI GGCC 5 cut(s) 5, 101, 554, 914, 1375
BspCNI CTCAG 4 cut(s) 181, 703, 827, 883
BspFNI CGCG 2 cut(s) 1177, 1197
BspHI TCATGA 1 cut(s) 735
BspLI GGNNCC 3 cut(s) 102, 150, 252
BspMI ACCTGC 1 cut(s) 788
BspPI GGATC 5 cut(s) 41, 208, 360, 375, 723
BspT107I GGYRCC 2 cut(s) 148, 250
BspTNI GGTCTC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 718, 1365
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 941, 1376
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 8 cut(s) 46, 213, 352, 367, 451, 472, 715, 824
BssNI GRCGYC 1 cut(s) 640
Bst2UI CCWGG 4 cut(s) 98, 218, 987, 1323
Bst4CI ACNGT 3 cut(s) 73, 586, 1265
Bst6I CTCTTC 2 cut(s) 666, 1032
BstACI GRCGYC 1 cut(s) 640
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 6 cut(s) 579, 785, 845, 867, 897, 1163
BstDEI CTNAG 6 cut(s) 168, 460, 711, 814, 891, 950
BstF5I GGATG 4 cut(s) 646, 818, 1021, 1048
BstFNI CGCG 2 cut(s) 1177, 1197
BstHHI GCGC 1 cut(s) 1177
BstKTI GATC 8 cut(s) 49, 216, 355, 370, 454, 475, 718, 827
BstMAI GTCTC 2 cut(s) 321, 393
BstMBI GATC 8 cut(s) 46, 213, 352, 367, 451, 472, 715, 824
BstMWI GCNNNNNNNGC 5 cut(s) 140, 196, 320, 343, 905
BstNI CCWGG 4 cut(s) 98, 218, 987, 1323
BstNSI RCATGY 3 cut(s) 847, 869, 979
BstSCI CCNGG 6 cut(s) 96, 216, 985, 1100, 1288, 1321
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 2 cut(s) 1177, 1197
BstV1I GCAGC 4 cut(s) 298, 361, 739, 1297
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 711
BsuRI GGCC 5 cut(s) 5, 101, 554, 914, 1375
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 4 cut(s) 646, 818, 1021, 1048
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 454
BveI ACCTGC 1 cut(s) 788
Cac8I GCNNGC 6 cut(s) 579, 785, 845, 867, 897, 1163
CaiI CAGNNNCTG 1 cut(s) 1382
CciI TCATGA 1 cut(s) 735
CfoI GCGC 1 cut(s) 1177
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 5 cut(s) 4, 100, 172, 553, 1325
CseI GACGC 1 cut(s) 1203
CsiI ACCWGGT 1 cut(s) 985
Csp6I GTAC 4 cut(s) 149, 286, 614, 777
CspCI CAANNNNNGTGG 2 cut(s) 1189, 1224
CviQI GTAC 4 cut(s) 149, 286, 614, 777
DdeI CTNAG 6 cut(s) 168, 460, 711, 814, 891, 950
DpnI GATC 8 cut(s) 48, 215, 354, 369, 453, 474, 717, 826
DpnII GATC 8 cut(s) 46, 213, 352, 367, 451, 472, 715, 824
DraIII CACNNNGTG 1 cut(s) 250
DriI GACNNNNNGTC 1 cut(s) 953
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 2 cut(s) 666, 1032
Eam1105I GACNNNNNGTC 1 cut(s) 953
EarI CTCTTC 2 cut(s) 666, 1032
EciI GGCGGA 4 cut(s) 118, 177, 225, 914
Eco31I GGTCTC 1 cut(s) 321
Eco47I GGWCC 2 cut(s) 172, 1325
Eco57I CTGAAG 1 cut(s) 525
Eco72I CACGTG 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 711
Eco88I CYCGRG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 100, 553
EcoRII CCWGG 4 cut(s) 96, 216, 985, 1321
EcoT22I ATGCAT 2 cut(s) 849, 871
FaqI GGGAC 3 cut(s) 98, 209, 1264
FauI CCCGC 3 cut(s) 31, 148, 1154
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 180
FokI GGATG 4 cut(s) 633, 805, 1028, 1055
GlaI GCGC 1 cut(s) 1176
GsaI CCCAGC 2 cut(s) 577, 759
GsuI CTGGAG 1 cut(s) 958
HaeIII GGCC 5 cut(s) 5, 101, 554, 914, 1375
HapII CCGG 5 cut(s) 278, 324, 365, 1102, 1289
HgaI GACGC 1 cut(s) 1203
HhaI GCGC 1 cut(s) 1177
Hin1I GRCGYC 1 cut(s) 640
Hin6I GCGC 1 cut(s) 1175
HinP1I GCGC 1 cut(s) 1175
HindIII AAGCTT 2 cut(s) 395, 605
HinfI GANTC 7 cut(s) 35, 427, 655, 884, 954, 1094, 1252
HpaII CCGG 5 cut(s) 278, 324, 365, 1102, 1289
HphI GGTGA 2 cut(s) 29, 254
Hpy166II GTNNAC 4 cut(s) 20, 175, 181, 947
Hpy188I TCNGA 8 cut(s) 34, 213, 403, 456, 638, 664, 959, 1090
Hpy188III TCNNGA 4 cut(s) 66, 541, 736, 822
Hpy8I GTNNAC 4 cut(s) 20, 175, 181, 947
HpyAV CCTTC 3 cut(s) 8, 500, 625
HpyCH4III ACNGT 3 cut(s) 73, 586, 1265
HpyCH4IV ACGT 3 cut(s) 177, 246, 640
HpyCH4V TGCA 9 cut(s) 533, 581, 679, 847, 865, 869, 1027, 1358, 1394
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 196, 320, 343, 905
HpyF3I CTNAG 6 cut(s) 168, 460, 711, 814, 891, 950
HpySE526I ACGT 3 cut(s) 177, 246, 640
Hsp92I GRCGYC 1 cut(s) 640
HspAI GCGC 1 cut(s) 1175
KpnI GGTACC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 8 cut(s) 46, 213, 352, 367, 451, 472, 715, 824
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 4 cut(s) 298, 361, 739, 1297
LweI GCATC 5 cut(s) 542, 655, 827, 1033, 1102
MabI ACCWGGT 1 cut(s) 985
MaeII ACGT 3 cut(s) 177, 246, 640
MaeIII GTNAC 1 cut(s) 854
MalI GATC 8 cut(s) 48, 215, 354, 369, 453, 474, 717, 826
MbiI CCGCTC 1 cut(s) 134
MboI GATC 8 cut(s) 46, 213, 352, 367, 451, 472, 715, 824
MfeI CAATTG 1 cut(s) 1269
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 6 cut(s) 703, 771, 805, 1028, 1106, 1269
MlyI GAGTC 3 cut(s) 649, 963, 1246
Mph1103I ATGCAT 2 cut(s) 849, 871
MroXI GAANNNNTTC 2 cut(s) 73, 743
MseI TTAA 5 cut(s) 549, 921, 962, 969, 1386
MslI CAYNNNNRTG 4 cut(s) 621, 1074, 1122, 1146
MspI CCGG 5 cut(s) 278, 324, 365, 1102, 1289
MspR9I CCNGG 6 cut(s) 98, 218, 987, 1102, 1290, 1323
MunI CAATTG 1 cut(s) 1269
MvaI CCWGG 4 cut(s) 98, 218, 987, 1323
MvnI CGCG 2 cut(s) 1177, 1197
MwoI GCNNNNNNNGC 5 cut(s) 140, 196, 320, 343, 905
NciI CCSGG 2 cut(s) 1102, 1290
NdeII GATC 8 cut(s) 46, 213, 352, 367, 451, 472, 715, 824
NlaIV GGNNCC 3 cut(s) 102, 150, 252
NsiI ATGCAT 2 cut(s) 849, 871
NspI RCATGY 3 cut(s) 847, 869, 979
PaeI GCATGC 2 cut(s) 847, 869
PagI TCATGA 1 cut(s) 735
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 2 cut(s) 73, 743
PfeI GAWTC 4 cut(s) 35, 427, 884, 1094
PfoI TCCNGGA 1 cut(s) 1321
PleI GAGTC 3 cut(s) 649, 962, 1246
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 3 cut(s) 649, 962, 1246
Ppu21I YACGTR 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 962
Psp6I CCWGG 4 cut(s) 96, 216, 985, 1321
PspCI CACGTG 1 cut(s) 247
PspFI CCCAGC 2 cut(s) 573, 755
PspGI CCWGG 4 cut(s) 96, 216, 985, 1321
PspN4I GGNNCC 3 cut(s) 102, 150, 252
PspPI GGNCC 5 cut(s) 4, 100, 172, 553, 1325
PstNI CAGNNNCTG 1 cut(s) 1382
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 4 cut(s) 150, 287, 615, 778
RsaNI GTAC 4 cut(s) 149, 286, 614, 777
RseI CAYNNNNRTG 4 cut(s) 621, 1074, 1122, 1146
SaqAI TTAA 5 cut(s) 549, 921, 962, 969, 1386
Sau3AI GATC 8 cut(s) 46, 213, 352, 367, 451, 472, 715, 824
Sau96I GGNCC 5 cut(s) 4, 100, 172, 553, 1325
SchI GAGTC 3 cut(s) 649, 963, 1246
ScrFI CCNGG 6 cut(s) 98, 218, 987, 1102, 1290, 1323
SduI GDGCHC 1 cut(s) 255
SexAI ACCWGGT 1 cut(s) 985
SfaNI GCATC 5 cut(s) 542, 655, 827, 1033, 1102
SinI GGWCC 2 cut(s) 172, 1325
SmiMI CAYNNNNRTG 4 cut(s) 621, 1074, 1122, 1146
SphI GCATGC 2 cut(s) 847, 869
Sse9I AATT 6 cut(s) 703, 771, 805, 1028, 1106, 1269
SspI AATATT 1 cut(s) 1390
StyD4I CCNGG 6 cut(s) 96, 216, 985, 1100, 1288, 1321
TaaI ACNGT 3 cut(s) 73, 586, 1265
TaiI ACGT 3 cut(s) 180, 249, 643
TaqI TCGA 2 cut(s) 1183, 1237
TasI AATT 6 cut(s) 703, 771, 805, 1028, 1106, 1269
TatI WGTACW 1 cut(s) 613
TauI GCSGC 7 cut(s) 87, 134, 340, 343, 346, 790, 1200
TfiI GAWTC 4 cut(s) 35, 427, 884, 1094
Tru1I TTAA 5 cut(s) 549, 921, 962, 969, 1386
Tru9I TTAA 5 cut(s) 549, 921, 962, 969, 1386
TscAI CASTG 2 cut(s) 150, 454
TseI GCWGC 4 cut(s) 311, 374, 752, 1285
TspDTI ATGAA 7 cut(s) 420, 478, 633, 752, 897, 1071, 1140
TspRI CASTG 2 cut(s) 150, 454
VpaK11BI GGWCC 2 cut(s) 172, 1325
VspI ATTAAT 1 cut(s) 962
XapI RAATTY 1 cut(s) 703
XceI RCATGY 3 cut(s) 847, 869, 979
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 2 cut(s) 73, 743
ZraI GACGTC 1 cut(s) 641
Zsp2I ATGCAT 2 cut(s) 849, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.