FvH4_1g00200

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012384
Physical Location & Seq
Reverse (-)
105220 .. 108931
3712 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00200.t1

Sequence Viewer

Length: 1365 bp
ATGGCCCAAGGCGAACCCAGTCTCTCCGATTCTCTATTAGATCCATCTCTCTCCCGAAACACTTCATTCAGCCGCCTCAATGCCCAGGCCCCAGAGTTCGTCCCCAATCGGAGTCCCGCCGCCGCATCCCCGCCGCCTCTCCCTCAGCCGCTCTACTCTCCGCCTCTCACTCCCGCTCCTTTCCATGTTCCGATCCAGGTCGTCCCTCCTCCTCCGCCTCCTCTCGTCCATCACCGTCATCACTTGCCCGTTCACTACCATCACCATCCCTATTACGCTTCCGGATTTTCCGGAGACCAAGACCAACCGACGTCGGACGAGCAACCGCCGCCGGATCACGCTACCTCCTCCAAGTCTCACAAGCTTTCCGATGAAGCTACTTCCAAGGTTTTGAATCAGGTGGAGTATTATTTCAGCGATCTGAACTTAGCTACAACTGATCATCTTATGAGGTTCATAAGTAAAGACCCTGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTTGTAAATAGTCATTCCCAGCTTGCAACTGTTTTGCGGAATTCCTCAAAGCTTGTGGTGCATGAAGATGGGAAGAAGGTCAGACGTCAGCATCCTCTGACTCAGTCAGATATGGAGGAGTTGCAATCTCGCATTGTTGTTGCTGAAAATTTACCCGAGGATCATTGCCACCAAAACCTCATGAAGATTTTCTCTGCTGCTGGGAGTGTAAAGACAATTCGTACCTGTCAGCCACAAACCTCAAATAATAATTCTTCCTCAGCATCCAGATCAGCAAAAGCAGATGGCATGCATTTCAGTAACAAGTTGCATGCATTTGTGGAATATGAATCCCCTGAGCTGGCAGAGAAAGCTGTGGCTGAACTTAATGAAGAGGGGAACTGGAGGAGTGGACTTAGAGTCCGGTTAATGCTTAGACGCCTGTCAAAACCTGGTCAAGTGCGAGGGAAAAAGGGGCAGGATGGGGAAGTGCAATTAGAGGAAGAGGATGCTTCTGCACCTGAACAAAATCATGCCAATGAGAAACAATCAGACGATACTTCCCGGCAGTTTGATGCTCATTCACATGAACAAGGAGAGGAACATGGCAATGATAAGGAGAGCGGGCAAAGGAAAGCGCGTAATCGACAAGGAGGACGCGGTAGGGGACGTGGGCGGGGTCAATACCACCACAATAATCGAAATCATGTTGGGACGTCTCATAACAGTTCAATGGGTAGTAGCGAGCAGCCAGGAATAGGTGTCAGTGTAGCCAAACAGCCTCCTGGACCTCGTATGCCGGATGGGACAAGAGGATTTGCAATGGGTCGGGGGAAGCCAGTTACTGTTAATATTGCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La PAM2 RRM_1

Protein Analysis

455

Amino Acids

49.96

Weight (kDa)

8.39

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 131 - 188 9.7e-20 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43970 AT2G43970
fragaria_vesca FvH4_1g00200
malus_domestica MD00G1087300.v1.1 MD15G1143100.v1.1
prunus_persica Prupe.7G269900_v2.0.a1 Prupe.7G269900_v2.0.a1
pyrus_communis pycom15g12920 pycom290g00200
rosa_chinensis RchiOBHm_Chr2g0084471
rosa_laevigata RLG00000015621
rosa_multiflora Rmu_sc0009404.1_g000001
rosa_roxburghii Rroxscaffold_2G00156030
rosa_rugosa Rorug01G0454300
rosa_samantha Rh2AG002400 Rh2BG002000 Rh2CG002500 Rh2DG002500
rosa_wichuraiana Rw2G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 314, 610, 1220
AccBSI CCGCTC 3 cut(s) 151, 176, 1125
AccII CGCG 2 cut(s) 1141, 1161
AccIII TCCGGA 2 cut(s) 281, 290
AclWI GGATC 4 cut(s) 35, 187, 342, 690
AcsI RAATTY 2 cut(s) 562, 670
AcuI CTGAAG 1 cut(s) 492
AcyI GRCGYC 4 cut(s) 311, 607, 940, 1217
AfaI GTAC 1 cut(s) 745
AfiI CCNNNNNNNGG 2 cut(s) 862, 1259
AgsI TTSAA 3 cut(s) 394, 508, 1233
AhdI GACNNNNNGTC 1 cut(s) 920
AjiI CACGTC 1 cut(s) 1172
AjnI CCWGG 5 cut(s) 84, 195, 952, 1252, 1285
AluBI AGCT 7 cut(s) 364, 377, 431, 544, 574, 862, 875
AluI AGCT 7 cut(s) 364, 377, 431, 544, 574, 862, 875
Alw26I GTCTC 4 cut(s) 26, 288, 360, 1224
AlwI GGATC 4 cut(s) 35, 187, 342, 690
AlwNI CAGNNNCTG 1 cut(s) 1346
Ama87I CYCGRG 1 cut(s) 677
Aor13HI TCCGGA 2 cut(s) 281, 290
AoxI GGCC 3 cut(s) 3, 87, 519
ApeKI GCWGC 2 cut(s) 719, 1249
ApoI RAATTY 2 cut(s) 562, 670
Asp700I GAANNNNTTC 2 cut(s) 61, 710
AspLEI GCGC 1 cut(s) 1141
AspS9I GGNCC 4 cut(s) 4, 88, 520, 1289
AsuC2I CCSGG 1 cut(s) 1066
AsuHPI GGTGA 2 cut(s) 224, 254
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 1 cut(s) 1289
BbvCI CCTCAGC 2 cut(s) 144, 781
BbvI GCAGC 2 cut(s) 706, 1261
BccI CCATC 8 cut(s) 52, 237, 267, 273, 584, 800, 977, 1298
BciT130I CCWGG 5 cut(s) 86, 197, 954, 1254, 1287
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 1 cut(s) 1066
BcoDI GTCTC 4 cut(s) 26, 288, 360, 1224
BisI GCNGC 8 cut(s) 73, 120, 123, 134, 149, 329, 720, 1250
BlsI GCNGC 8 cut(s) 74, 121, 124, 135, 150, 330, 721, 1251
Bme1390I CCNGG 6 cut(s) 86, 197, 954, 1066, 1254, 1287
Bme18I GGWCC 1 cut(s) 1289
BmeRI GACNNNNNGTC 1 cut(s) 920
BmeT110I CYCGRG 1 cut(s) 677
BmgBI CACGTC 1 cut(s) 1172
BmgT120I GGNCC 4 cut(s) 4, 88, 520, 1289
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 6 cut(s) 86, 197, 954, 1066, 1254, 1287
BmrI ACTGGG 1 cut(s) 12
BmsI GCATC 6 cut(s) 134, 509, 622, 794, 1000, 1066
BmuI ACTGGG 1 cut(s) 12
BoxI GACNNNNGTC 1 cut(s) 943
BpmI CTGGAG 1 cut(s) 925
Bpu10I CCTNAGC 3 cut(s) 144, 781, 858
BpuMI CCSGG 1 cut(s) 1066
BsaHI GRCGYC 4 cut(s) 311, 607, 940, 1217
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 4 cut(s) 7, 84, 384, 678
BsaWI WCCGGW 3 cut(s) 281, 290, 924
BsaXI ACNNNNNCTCC 4 cut(s) 160, 190, 329, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 862, 1259
Bse1I ACTGG 3 cut(s) 18, 908, 1340
Bse3DI GCAATG 3 cut(s) 685, 1117, 1329
BseAI TCCGGA 2 cut(s) 281, 290
BseBI CCWGG 5 cut(s) 86, 197, 954, 1254, 1287
BseDI CCNNGG 4 cut(s) 7, 84, 384, 678
BseGI GGATG 7 cut(s) 125, 265, 613, 785, 988, 1015, 1309
BseLI CCNNNNNNNGG 2 cut(s) 862, 1259
BseMI GCAATG 3 cut(s) 685, 1117, 1329
BseMII CTCAG 4 cut(s) 158, 638, 795, 849
BseNI ACTGG 3 cut(s) 18, 908, 1340
BseRI GAGGAG 6 cut(s) 198, 201, 210, 337, 653, 922
BseXI GCAGC 2 cut(s) 706, 1261
BseYI CCCAGC 2 cut(s) 540, 722
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 2 cut(s) 1141, 1161
BshFI GGCC 3 cut(s) 5, 89, 521
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 6 cut(s) 282, 291, 332, 925, 1066, 1301
BslFI GGGAC 6 cut(s) 86, 99, 188, 1182, 1228, 1321
BslI CCNNNNNNNGG 2 cut(s) 862, 1259
BsmAI GTCTC 4 cut(s) 26, 288, 360, 1224
BsmBI CGTCTC 1 cut(s) 1224
BsmFI GGGAC 6 cut(s) 86, 99, 188, 1182, 1228, 1321
BsnI GGCC 3 cut(s) 5, 89, 521
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 677
Bsp13I TCCGGA 2 cut(s) 281, 290
Bsp143I GATC 7 cut(s) 40, 192, 334, 418, 439, 682, 791
BspANI GGCC 3 cut(s) 5, 89, 521
BspCNI CTCAG 4 cut(s) 157, 637, 794, 850
BspEI TCCGGA 2 cut(s) 281, 290
BspFNI CGCG 2 cut(s) 1141, 1161
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 4 cut(s) 35, 187, 342, 690
BspTNI GGTCTC 1 cut(s) 288
BsrBI CCGCTC 3 cut(s) 151, 176, 1125
BsrDI GCAATG 3 cut(s) 685, 1117, 1329
BsrI ACTGG 3 cut(s) 18, 908, 1340
BssECI CCNNGG 4 cut(s) 7, 84, 384, 678
BssMI GATC 7 cut(s) 40, 192, 334, 418, 439, 682, 791
BssNI GRCGYC 4 cut(s) 311, 607, 940, 1217
BssT1I CCWWGG 2 cut(s) 7, 384
Bst2UI CCWGG 5 cut(s) 86, 197, 954, 1254, 1287
Bst4CI ACNGT 4 cut(s) 236, 553, 1229, 1348
Bst6I CTCTTC 2 cut(s) 888, 999
BstACI GRCGYC 4 cut(s) 311, 607, 940, 1217
BstC8I GCNNGC 6 cut(s) 546, 812, 834, 864, 1127, 1247
BstDEI CTNAG 7 cut(s) 144, 427, 624, 781, 858, 917, 935
BstF5I GGATG 7 cut(s) 125, 265, 613, 785, 988, 1015, 1309
BstFNI CGCG 2 cut(s) 1141, 1161
BstHHI GCGC 1 cut(s) 1141
BstKTI GATC 7 cut(s) 43, 195, 337, 421, 442, 685, 794
BstMAI GTCTC 4 cut(s) 26, 288, 360, 1224
BstMBI GATC 7 cut(s) 40, 192, 334, 418, 439, 682, 791
BstMWI GCNNNNNNNGC 3 cut(s) 328, 580, 872
BstNI CCWGG 5 cut(s) 86, 197, 954, 1254, 1287
BstNSI RCATGY 2 cut(s) 814, 836
BstPAI GACNNNNGTC 1 cut(s) 943
BstSCI CCNGG 6 cut(s) 84, 195, 952, 1064, 1252, 1285
BstUI CGCG 2 cut(s) 1141, 1161
BstV1I GCAGC 2 cut(s) 706, 1261
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 3 cut(s) 5, 89, 521
BtrI CACGTC 1 cut(s) 1172
BtsCI GGATG 7 cut(s) 125, 265, 613, 785, 988, 1015, 1309
BtsIMutI CAGTG 1 cut(s) 1273
Cac8I GCNNGC 6 cut(s) 546, 812, 834, 864, 1127, 1247
CaiI CAGNNNCTG 1 cut(s) 1346
CciI TCATGA 1 cut(s) 702
CfoI GCGC 1 cut(s) 1141
Cfr13I GGNCC 4 cut(s) 4, 88, 520, 1289
CseI GACGC 2 cut(s) 948, 1167
CsiI ACCWGGT 1 cut(s) 952
Csp6I GTAC 1 cut(s) 744
CspCI CAANNNNNGTGG 2 cut(s) 558, 593
CviAII CATG 9 cut(s) 185, 584, 703, 811, 833, 1034, 1088, 1106, 1208
CviQI GTAC 1 cut(s) 744
DdeI CTNAG 7 cut(s) 144, 427, 624, 781, 858, 917, 935
DpnI GATC 7 cut(s) 42, 194, 336, 420, 441, 684, 793
DpnII GATC 7 cut(s) 40, 192, 334, 418, 439, 682, 791
DriI GACNNNNNGTC 1 cut(s) 920
Eam1104I CTCTTC 2 cut(s) 888, 999
Eam1105I GACNNNNNGTC 1 cut(s) 920
EarI CTCTTC 2 cut(s) 888, 999
EciI GGCGGA 2 cut(s) 150, 204
Eco130I CCWWGG 2 cut(s) 7, 384
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 1289
Eco57I CTGAAG 1 cut(s) 492
Eco88I CYCGRG 1 cut(s) 677
EcoO109I RGGNCCY 2 cut(s) 88, 520
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 5 cut(s) 84, 195, 952, 1252, 1285
EcoT14I CCWWGG 2 cut(s) 7, 384
EcoT22I ATGCAT 2 cut(s) 816, 838
ErhI CCWWGG 2 cut(s) 7, 384
Esp3I CGTCTC 1 cut(s) 1224
FaeI CATG 9 cut(s) 188, 587, 706, 814, 836, 1037, 1091, 1109, 1211
FaqI GGGAC 6 cut(s) 86, 99, 188, 1182, 1228, 1321
FatI CATG 9 cut(s) 184, 583, 702, 810, 832, 1033, 1087, 1105, 1207
FauI CCCGC 5 cut(s) 124, 138, 181, 1118, 1170
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 8 cut(s) 73, 120, 123, 134, 149, 329, 720, 1250
FokI GGATG 7 cut(s) 112, 252, 600, 772, 995, 1022, 1316
Fsp4HI GCNGC 8 cut(s) 73, 120, 123, 134, 149, 329, 720, 1250
GlaI GCGC 1 cut(s) 1140
GluI GCNGC 8 cut(s) 73, 120, 123, 134, 149, 329, 720, 1250
GsaI CCCAGC 2 cut(s) 544, 726
GsuI CTGGAG 1 cut(s) 925
HaeIII GGCC 3 cut(s) 5, 89, 521
HapII CCGG 6 cut(s) 282, 291, 332, 925, 1066, 1301
HgaI GACGC 2 cut(s) 948, 1167
HhaI GCGC 1 cut(s) 1141
Hin1I GRCGYC 4 cut(s) 311, 607, 940, 1217
Hin1II CATG 9 cut(s) 188, 587, 706, 814, 836, 1037, 1091, 1109, 1211
Hin6I GCGC 1 cut(s) 1139
HinP1I GCGC 1 cut(s) 1139
HindIII AAGCTT 2 cut(s) 362, 572
HinfI GANTC 6 cut(s) 29, 112, 394, 622, 851, 921
HpaII CCGG 6 cut(s) 282, 291, 332, 925, 1066, 1301
HphI GGTGA 2 cut(s) 224, 254
Hpy166II GTNNAC 2 cut(s) 253, 914
Hpy188III TCNNGA 6 cut(s) 54, 282, 291, 508, 703, 789
Hpy8I GTNNAC 2 cut(s) 253, 914
Hpy99I CGWCG 2 cut(s) 313, 316
HpyAV CCTTC 2 cut(s) 467, 592
HpyCH4III ACNGT 4 cut(s) 236, 553, 1229, 1348
HpyCH4IV ACGT 4 cut(s) 311, 607, 1171, 1217
HpyF10VI GCNNNNNNNGC 3 cut(s) 328, 580, 872
HpyF3I CTNAG 7 cut(s) 144, 427, 624, 781, 858, 917, 935
HpySE526I ACGT 4 cut(s) 311, 607, 1171, 1217
Hsp92I GRCGYC 4 cut(s) 311, 607, 940, 1217
Hsp92II CATG 9 cut(s) 188, 587, 706, 814, 836, 1037, 1091, 1109, 1211
HspAI GCGC 1 cut(s) 1139
Kpn2I TCCGGA 2 cut(s) 281, 290
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 7 cut(s) 40, 192, 334, 418, 439, 682, 791
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 2 cut(s) 706, 1261
LweI GCATC 6 cut(s) 134, 509, 622, 794, 1000, 1066
MabI ACCWGGT 1 cut(s) 952
MaeII ACGT 4 cut(s) 311, 607, 1171, 1217
MaeIII GTNAC 2 cut(s) 821, 1342
MalI GATC 7 cut(s) 42, 194, 336, 420, 441, 684, 793
MbiI CCGCTC 3 cut(s) 151, 176, 1125
MboI GATC 7 cut(s) 40, 192, 334, 418, 439, 682, 791
MboII GAAGA 7 cut(s) 523, 599, 607, 718, 768, 905, 1016
MflI RGATCY 1 cut(s) 40
MluCI AATT 5 cut(s) 562, 670, 738, 772, 995
MlyI GAGTC 3 cut(s) 121, 616, 930
MmeI TCCRAC 1 cut(s) 294
Mph1103I ATGCAT 2 cut(s) 816, 838
MroI TCCGGA 2 cut(s) 281, 290
MroXI GAANNNNTTC 2 cut(s) 61, 710
MseI TTAA 4 cut(s) 516, 888, 929, 1350
MslI CAYNNNNRTG 4 cut(s) 588, 1038, 1086, 1110
MspI CCGG 6 cut(s) 282, 291, 332, 925, 1066, 1301
MspR9I CCNGG 6 cut(s) 86, 197, 954, 1066, 1254, 1287
MvaI CCWGG 5 cut(s) 86, 197, 954, 1254, 1287
MvnI CGCG 2 cut(s) 1141, 1161
MwoI GCNNNNNNNGC 3 cut(s) 328, 580, 872
NciI CCSGG 1 cut(s) 1066
NdeII GATC 7 cut(s) 40, 192, 334, 418, 439, 682, 791
NlaIII CATG 9 cut(s) 188, 587, 706, 814, 836, 1037, 1091, 1109, 1211
NlaIV GGNNCC 1 cut(s) 90
NsiI ATGCAT 2 cut(s) 816, 838
NspI RCATGY 2 cut(s) 814, 836
PaeI GCATGC 2 cut(s) 814, 836
PagI TCATGA 1 cut(s) 702
PdmI GAANNNNTTC 2 cut(s) 61, 710
PfeI GAWTC 3 cut(s) 29, 394, 851
PflFI GACNNNGTC 1 cut(s) 625
PfoI TCCNGGA 1 cut(s) 1285
PkrI GCNGC 8 cut(s) 74, 121, 124, 135, 150, 330, 721, 1251
PleI GAGTC 3 cut(s) 120, 616, 929
PpsI GAGTC 3 cut(s) 120, 616, 929
PshAI GACNNNNGTC 1 cut(s) 943
Psp6I CCWGG 5 cut(s) 84, 195, 952, 1252, 1285
PspFI CCCAGC 2 cut(s) 540, 722
PspGI CCWGG 5 cut(s) 84, 195, 952, 1252, 1285
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 4 cut(s) 4, 88, 520, 1289
PstNI CAGNNNCTG 1 cut(s) 1346
PsuI RGATCY 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 625
RsaI GTAC 1 cut(s) 745
RsaNI GTAC 1 cut(s) 744
RseI CAYNNNNRTG 4 cut(s) 588, 1038, 1086, 1110
SaqAI TTAA 4 cut(s) 516, 888, 929, 1350
SatI GCNGC 8 cut(s) 73, 120, 123, 134, 149, 329, 720, 1250
Sau3AI GATC 7 cut(s) 40, 192, 334, 418, 439, 682, 791
Sau96I GGNCC 4 cut(s) 4, 88, 520, 1289
SchI GAGTC 3 cut(s) 121, 616, 930
ScrFI CCNGG 6 cut(s) 86, 197, 954, 1066, 1254, 1287
SexAI ACCWGGT 1 cut(s) 952
SfaNI GCATC 6 cut(s) 134, 509, 622, 794, 1000, 1066
SinI GGWCC 1 cut(s) 1289
SmiMI CAYNNNNRTG 4 cut(s) 588, 1038, 1086, 1110
SphI GCATGC 2 cut(s) 814, 836
Sse9I AATT 5 cut(s) 562, 670, 738, 772, 995
SspI AATATT 1 cut(s) 1354
StyD4I CCNGG 6 cut(s) 84, 195, 952, 1064, 1252, 1285
StyI CCWWGG 2 cut(s) 7, 384
TaaI ACNGT 4 cut(s) 236, 553, 1229, 1348
TaiI ACGT 4 cut(s) 314, 610, 1174, 1220
TaqI TCGA 2 cut(s) 1147, 1201
TasI AATT 5 cut(s) 562, 670, 738, 772, 995
TauI GCSGC 6 cut(s) 75, 122, 125, 136, 151, 331
TfiI GAWTC 3 cut(s) 29, 394, 851
Tru1I TTAA 4 cut(s) 516, 888, 929, 1350
Tru9I TTAA 4 cut(s) 516, 888, 929, 1350
TscAI CASTG 1 cut(s) 1273
TseI GCWGC 2 cut(s) 719, 1249
TspDTI ATGAA 8 cut(s) 54, 387, 445, 600, 719, 864, 906, 1104
TspRI CASTG 1 cut(s) 1273
Tth111I GACNNNGTC 1 cut(s) 625
VpaK11BI GGWCC 1 cut(s) 1289
XapI RAATTY 2 cut(s) 562, 670
XceI RCATGY 2 cut(s) 814, 836
XmnI GAANNNNTTC 2 cut(s) 61, 710
ZraI GACGTC 3 cut(s) 312, 608, 1218
Zsp2I ATGCAT 2 cut(s) 816, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.