Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Reverse (-)

18305080 .. 18306395

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAGTCACGGAAGATTAAAGTAATGGCGACAGCAATAGCTTTAATAATGGTGGCTATGGTGGTGGATGCCGCCGGAGCTGATAAAGGGAAAGACAAGGAAGAGTGTACGGCGCAGCTGGTCGGTATGGCCACATGTCTTCCTTACGTGCAAGGAAAGGCAAAATCTCCGACGCCAGACTGTTGCTCCGGCCTCAAACAAGTTATTAATTCCGACATGAAGTGTCTTTGTATGATCATCCAAGAGAGGAATGATCCTGATTTGGGTCTCCAGGTCAACGTCTCTCTCGCTCTCGCTCTTCCTTCTGTTTGCCACGCCACTGCTGACATCACTAAGTGCCCTGCTTTGCTTCATTTGGACCCAAATTCTCCGGATGCCCAAGTGTTCTATCAGCTAGCTAAAGGTCTGAACGAAACAGTCTCAGCCTCTGCTCCCACTGGCTCGGCCTCTGAGCCCACTAGTATGTCTTCGACCCCAGGATCCAGTGCTGGTAACAACAGTGGTCGGACGACCTCTGTGCCAGGCACGAACCACGCTCAAAGCTTCTCCAAACAATGGCTAGGGCTCGAAGTTGTTGCCCATTTCTTCGTAATTTTTTATATTTTCATCCTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

205

Amino Acids

21.58

Weight (kDa)

6.05

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	18 - 113	8.9e-18	Probable lipid transfer
Tryp_alpha_amyl	PF00234	36 - 113	2.9e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	3 cut(s)	248, 474, 487
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	364
AcyI	GRCGYC	1 cut(s)	173
AdeI	CACNNNGTG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	263, 555
AflIII	ACRYGT	1 cut(s)	134
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	3 cut(s)	270, 475, 520
AluBI	AGCT	6 cut(s)	41, 80, 118, 394, 398, 543
AluI	AGCT	6 cut(s)	41, 80, 118, 394, 398, 543
Alw26I	GTCTC	3 cut(s)	272, 286, 424
AlwI	GGATC	3 cut(s)	248, 474, 487
AlwNI	CAGNNNCTG	1 cut(s)	428
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	3 cut(s)	129, 190, 444
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	364
AseI	ATTAAT	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	358
AsuNHI	GCTAGC	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	479
BanII	GRGCYC	2 cut(s)	456, 567
BbsI	GAAGAC	2 cut(s)	131, 459
BbvI	GCAGC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	126
BcgI	CGANNNNNNTGC	4 cut(s)	499, 533, 557, 591
BciT130I	CCWGG	3 cut(s)	272, 477, 522
BclI	TGATCA	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	272, 286, 424
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	3 cut(s)	395, 459, 560
BisI	GCNGC	2 cut(s)	72, 116
BlsI	GCNGC	2 cut(s)	73, 117
Bme1390I	CCNGG	3 cut(s)	272, 477, 522
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	360, 481
BmrFI	CCNGG	3 cut(s)	272, 477, 522
BmsI	GCATC	2 cut(s)	58, 364
BmtI	GCTAGC	1 cut(s)	398
BpiI	GAAGAC	2 cut(s)	131, 459
BpmI	CTGGAG	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 555
Bse1I	ACTGG	2 cut(s)	442, 483
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	3 cut(s)	272, 477, 522
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	4 cut(s)	73, 237, 379, 606
BseLI	CCNNNNNNNGG	2 cut(s)	263, 555
BseMII	CTCAG	2 cut(s)	435, 441
BseNI	ACTGG	2 cut(s)	442, 483
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	3 cut(s)	131, 192, 446
BsiSI	CCGG	3 cut(s)	75, 189, 371
BslI	CCNNNNNNNGG	2 cut(s)	263, 555
BsmAI	GTCTC	3 cut(s)	272, 286, 424
BsmBI	CGTCTC	1 cut(s)	286
BsnI	GGCC	3 cut(s)	131, 192, 446
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	3 cut(s)	341, 456, 567
Bsp13I	TCCGGA	1 cut(s)	370
Bsp143I	GATC	3 cut(s)	234, 253, 479
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	3 cut(s)	131, 192, 446
BspCNI	CTCAG	2 cut(s)	434, 442
BspEI	TCCGGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	360, 481
BspOI	GCTAGC	1 cut(s)	398
BspPI	GGATC	3 cut(s)	248, 474, 487
BspQI	GCTCTTC	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	442, 483
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	3 cut(s)	234, 253, 479
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	3 cut(s)	272, 477, 522
Bst4CI	ACNGT	3 cut(s)	182, 418, 500
Bst6I	CTCTTC	2 cut(s)	96, 303
BstACI	GRCGYC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	333, 421, 450
BstF5I	GGATG	4 cut(s)	73, 237, 379, 606
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	3 cut(s)	237, 256, 482
BstMAI	GTCTC	3 cut(s)	272, 286, 424
BstMBI	GATC	3 cut(s)	234, 253, 479
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	3 cut(s)	272, 477, 522
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	3 cut(s)	270, 475, 520
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	2 cut(s)	131, 459
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
BsuRI	GGCC	3 cut(s)	131, 192, 446
BtsCI	GGATG	4 cut(s)	73, 237, 379, 606
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	4 cut(s)	318, 435, 490, 505
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	428
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	358
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	135, 217
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	3 cut(s)	333, 421, 450
DpnI	GATC	3 cut(s)	236, 255, 481
DpnII	GATC	3 cut(s)	234, 253, 479
DraIII	CACNNNGTG	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	96, 303
EarI	CTCTTC	2 cut(s)	96, 303
Eco24I	GRGCYC	2 cut(s)	456, 567
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	358
EcoRII	CCWGG	3 cut(s)	270, 475, 520
EcoT38I	GRGCYC	2 cut(s)	456, 567
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	2 cut(s)	138, 220
FaiI	YATR	7 cut(s)	59, 128, 136, 218, 233, 464, 600
FatI	CATG	2 cut(s)	134, 216
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	72, 116
FokI	GGATG	4 cut(s)	80, 224, 386, 593
FriOI	GRGCYC	2 cut(s)	456, 567
Fsp4HI	GCNGC	2 cut(s)	72, 116
FspBI	CTAG	3 cut(s)	395, 459, 560
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	2 cut(s)	72, 116
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	131, 192, 446
HapII	CCGG	3 cut(s)	75, 189, 371
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	138, 220
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	3 cut(s)	75, 189, 371
Hpy166II	GTNNAC	2 cut(s)	108, 277
Hpy188I	TCNGA	5 cut(s)	171, 214, 408, 451, 507
Hpy188III	TCNNGA	2 cut(s)	257, 371
Hpy8I	GTNNAC	2 cut(s)	108, 277
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	3 cut(s)	182, 418, 500
HpyCH4IV	ACGT	2 cut(s)	147, 279
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	3 cut(s)	333, 421, 450
HpySE526I	ACGT	2 cut(s)	147, 279
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	138, 220
HspAI	GCGC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	234, 253, 479
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	3 cut(s)	77, 191, 436
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	58, 364
MaeI	CTAG	3 cut(s)	395, 459, 560
MaeII	ACGT	2 cut(s)	147, 279
MaeIII	GTNAC	2 cut(s)	6, 491
MalI	GATC	3 cut(s)	236, 255, 481
MboI	GATC	3 cut(s)	234, 253, 479
MboII	GAAGA	6 cut(s)	25, 113, 131, 290, 459, 577
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	3 cut(s)	341, 456, 567
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	3 cut(s)	208, 364, 591
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	3 cut(s)	194, 237, 485
MnlI	CCTC	5 cut(s)	203, 240, 436, 457, 523
Mox20I	TGGCCA	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	3 cut(s)	18, 44, 207
MslI	CAYNNNNRTG	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	3 cut(s)	75, 189, 371
MspR9I	CCNGG	3 cut(s)	272, 477, 522
MvaI	CCWGG	3 cut(s)	272, 477, 522
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	3 cut(s)	234, 253, 479
NheI	GCTAGC	1 cut(s)	394
NlaIII	CATG	2 cut(s)	138, 220
NlaIV	GGNNCC	2 cut(s)	360, 481
NmeAIII	GCCGAG	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	138
PciI	ACATGT	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	303
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	2 cut(s)	73, 117
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	148
PscI	ACATGT	1 cut(s)	134
PshBI	ATTAAT	1 cut(s)	207
Psp6I	CCWGG	3 cut(s)	270, 475, 520
PspGI	CCWGG	3 cut(s)	270, 475, 520
PspN4I	GGNNCC	2 cut(s)	360, 481
PspPI	GGNCC	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	479
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	18, 44, 207
SatI	GCNGC	2 cut(s)	72, 116
Sau3AI	GATC	3 cut(s)	234, 253, 479
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	272, 477, 522
SduI	GDGCHC	3 cut(s)	341, 456, 567
SfaNI	GCATC	2 cut(s)	58, 364
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	461
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	3 cut(s)	208, 364, 591
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	3 cut(s)	395, 459, 560
StyD4I	CCNGG	3 cut(s)	270, 475, 520
TaaI	ACNGT	3 cut(s)	182, 418, 500
TaiI	ACGT	2 cut(s)	150, 282
TaqI	TCGA	2 cut(s)	470, 567
TasI	AATT	3 cut(s)	208, 364, 591
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	18, 44, 207
Tru9I	TTAA	3 cut(s)	18, 44, 207
TscAI	CASTG	4 cut(s)	325, 442, 490, 505
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	3 cut(s)	233, 341, 595
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	4 cut(s)	325, 442, 490, 505
Van91I	CCANNNNNTGG	1 cut(s)	555
VpaK11BI	GGWCC	1 cut(s)	358
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	1 cut(s)	138
XspI	CTAG	3 cut(s)	395, 459, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.