Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Reverse (-)

285538 .. 287448

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G001800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGATTGGTGAGACTACCAGTCGTCCTGGTCCTGCTGCTAATTATATCAATAAGCTTGGGAATGGCAGCAGCAGATTCAGCAAAAGATAGAGACGAATGTACGCAGCAGTTAGCAGGGATGGCCACGTGTCTGCCTTACGTTCAAGGCCAAGCTAAGACCCCAACACCAGACTGTTGCAGTGGTCTCAAGCAAGTCCTCAACAGCAATAAGAAGTGCCTTTGCGTTATCATTCAAGATCGCAATGATCCAGAACTGGATCTGCAGATAAATGTCACGCTTGCTTTGGGCCTGCCTTCCGTTTGCCAGGTCCCTGCTAATGTCTCAAAGTGTCCCGAACTTCTGCATTTGGATCCTAAATCACCAGAAGCTCAAGTTTTCTATCAGTTGGAAAGGAACTCTACTCAAACTGCCAACTCGAGTCTTGCTCCAAGTCCTAGTGCAGTTGAGGCTCCCGCCAGTGCCAAAAGTGTAGGGTCAAGTTCTAGCAGCCGAAACAAAGTCGGTGTGTTGCAGTGGAAAGAAAGAGACTCGTCCTGGTGTTTCGCCTTAATGGTTTTCTACTTGTTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

192

Amino Acids

20.52

Weight (kDa)

6.55

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	4 cut(s)	242, 267, 347, 360
AcoI	YGGCCR	1 cut(s)	123
AcvI	CACGTG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	103
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	146, 236
AhdI	GACNNNNNGTC	1 cut(s)	20
AjnI	CCWGG	3 cut(s)	27, 306, 536
AluBI	AGCT	3 cut(s)	57, 155, 371
AluI	AGCT	3 cut(s)	57, 155, 371
Alw26I	GTCTC	5 cut(s)	7, 87, 191, 328, 522
AlwI	GGATC	4 cut(s)	242, 267, 347, 360
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	3 cut(s)	123, 148, 289
ApeKI	GCWGC	5 cut(s)	37, 68, 71, 106, 489
AspS9I	GGNCC	3 cut(s)	31, 289, 310
AsuHPI	GGTGA	2 cut(s)	22, 354
AvaI	CYCGRG	1 cut(s)	418
AvaII	GGWCC	2 cut(s)	31, 310
BalI	TGGCCA	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	352
BbrPI	CACGTG	1 cut(s)	129
BbvI	GCAGC	5 cut(s)	24, 80, 83, 118, 501
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	3 cut(s)	29, 308, 538
BcoDI	GTCTC	5 cut(s)	7, 87, 191, 328, 522
BfaI	CTAG	3 cut(s)	438, 486, 574
BfmI	CTRYAG	1 cut(s)	263
BisI	GCNGC	5 cut(s)	38, 69, 72, 107, 490
BlsI	GCNGC	5 cut(s)	39, 70, 73, 108, 491
Bme1390I	CCNGG	3 cut(s)	29, 308, 538
Bme18I	GGWCC	2 cut(s)	31, 310
BmeRI	GACNNNNNGTC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	3 cut(s)	31, 289, 310
BmiI	GGNNCC	3 cut(s)	312, 354, 453
BmrFI	CCNGG	3 cut(s)	29, 308, 538
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
BpuEI	CTTGAG	2 cut(s)	173, 357
BsaAI	YACGTR	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	191
Bse1I	ACTGG	3 cut(s)	20, 261, 459
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	3 cut(s)	29, 308, 538
BseGI	GGATG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	250
BseNI	ACTGG	3 cut(s)	20, 261, 459
BseXI	GCAGC	5 cut(s)	24, 80, 83, 118, 501
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	3 cut(s)	125, 150, 291
BsiHKCI	CYCGRG	1 cut(s)	418
BslFI	GGGAC	2 cut(s)	296, 318
BsmAI	GTCTC	5 cut(s)	7, 87, 191, 328, 522
BsmBI	CGTCTC	1 cut(s)	87
BsmFI	GGGAC	2 cut(s)	296, 318
BsnI	GGCC	3 cut(s)	125, 150, 291
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	418
Bsp143I	GATC	4 cut(s)	238, 247, 259, 352
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	3 cut(s)	125, 150, 291
BspLI	GGNNCC	3 cut(s)	312, 354, 453
BspMAI	CTGCAG	1 cut(s)	267
BspPI	GGATC	4 cut(s)	242, 267, 347, 360
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	3 cut(s)	20, 261, 459
BssMI	GATC	4 cut(s)	238, 247, 259, 352
Bst2UI	CCWGG	3 cut(s)	29, 308, 538
Bst4CI	ACNGT	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	282, 293
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	126
BstKTI	GATC	4 cut(s)	241, 250, 262, 355
BstMAI	GTCTC	5 cut(s)	7, 87, 191, 328, 522
BstMBI	GATC	4 cut(s)	238, 247, 259, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 122, 449
BstNI	CCWGG	3 cut(s)	29, 308, 538
BstSCI	CCNGG	3 cut(s)	27, 306, 536
BstSFI	CTRYAG	1 cut(s)	263
BstV1I	GCAGC	5 cut(s)	24, 80, 83, 118, 501
BstX2I	RGATCY	2 cut(s)	259, 352
BstYI	RGATCY	2 cut(s)	259, 352
BsuRI	GGCC	3 cut(s)	125, 150, 291
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	2 cut(s)	187, 521
BtsIMutI	CAGTG	3 cut(s)	187, 466, 521
Cac8I	GCNNGC	2 cut(s)	282, 293
Cfr13I	GGNCC	3 cut(s)	31, 289, 310
Csp6I	GTAC	1 cut(s)	102
CviJI	RGCY	8 cut(s)	57, 125, 150, 155, 291, 371, 452, 492
CviKI_1	RGCY	8 cut(s)	57, 125, 150, 155, 291, 371, 452, 492
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	4 cut(s)	240, 249, 261, 354
DpnII	GATC	4 cut(s)	238, 247, 259, 352
DriI	GACNNNNNGTC	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	123
Eam1105I	GACNNNNNGTC	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	2 cut(s)	31, 310
Eco72I	CACGTG	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	418
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	27, 306, 536
Esp3I	CGTCTC	1 cut(s)	87
FaiI	YATR	1 cut(s)	47
FaqI	GGGAC	2 cut(s)	296, 318
FauI	CCCGC	1 cut(s)	463
Fnu4HI	GCNGC	5 cut(s)	38, 69, 72, 107, 490
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	5 cut(s)	38, 69, 72, 107, 490
FspBI	CTAG	3 cut(s)	438, 486, 574
GluI	GCNGC	5 cut(s)	38, 69, 72, 107, 490
HaeIII	GGCC	3 cut(s)	125, 150, 291
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	3 cut(s)	77, 421, 530
HphI	GGTGA	2 cut(s)	22, 354
Hpy188III	TCNNGA	3 cut(s)	236, 251, 335
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	2 cut(s)	128, 141
HpyCH4V	TGCA	5 cut(s)	180, 265, 346, 443, 514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 122, 449
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	2 cut(s)	128, 141
Kzo9I	GATC	4 cut(s)	238, 247, 259, 352
LmnI	GCTCC	2 cut(s)	433, 457
Lsp1109I	GCAGC	5 cut(s)	24, 80, 83, 118, 501
MaeI	CTAG	3 cut(s)	438, 486, 574
MaeII	ACGT	2 cut(s)	128, 141
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	4 cut(s)	240, 249, 261, 354
MboI	GATC	4 cut(s)	238, 247, 259, 352
MflI	RGATCY	2 cut(s)	259, 352
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	42
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	2 cut(s)	430, 524
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	2 cut(s)	209, 442
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	125
MspR9I	CCNGG	3 cut(s)	29, 308, 538
MvaI	CCWGG	3 cut(s)	29, 308, 538
MwoI	GCNNNNNNNGC	3 cut(s)	80, 122, 449
NdeII	GATC	4 cut(s)	238, 247, 259, 352
NlaIV	GGNNCC	3 cut(s)	312, 354, 453
NmuCI	GTSAC	1 cut(s)	274
PaeR7I	CTCGAG	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	5 cut(s)	39, 70, 73, 108, 491
PleI	GAGTC	2 cut(s)	429, 524
PmaCI	CACGTG	1 cut(s)	129
PmlI	CACGTG	1 cut(s)	129
PpsI	GAGTC	2 cut(s)	429, 524
Ppu21I	YACGTR	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	3 cut(s)	27, 306, 536
PspCI	CACGTG	1 cut(s)	129
PspGI	CCWGG	3 cut(s)	27, 306, 536
PspN4I	GGNNCC	3 cut(s)	312, 354, 453
PspPI	GGNCC	3 cut(s)	31, 289, 310
PspPPI	RGGWCCY	1 cut(s)	310
PspXI	VCTCGAGB	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	267
PsuI	RGATCY	2 cut(s)	259, 352
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	5 cut(s)	38, 69, 72, 107, 490
Sau3AI	GATC	4 cut(s)	238, 247, 259, 352
Sau96I	GGNCC	3 cut(s)	31, 289, 310
SchI	GAGTC	2 cut(s)	430, 524
ScrFI	CCNGG	3 cut(s)	29, 308, 538
SetI	ASST	6 cut(s)	59, 131, 144, 157, 312, 373
SfcI	CTRYAG	1 cut(s)	263
Sfr274I	CTCGAG	1 cut(s)	418
SinI	GGWCC	2 cut(s)	31, 310
SlaI	CTCGAG	1 cut(s)	418
SmlI	CTYRAG	3 cut(s)	188, 372, 418
SmoI	CTYRAG	3 cut(s)	188, 372, 418
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	456
SspMI	CTAG	3 cut(s)	438, 486, 574
StyD4I	CCNGG	3 cut(s)	27, 306, 536
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	2 cut(s)	131, 144
TaqI	TCGA	1 cut(s)	419
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TscAI	CASTG	3 cut(s)	187, 466, 521
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	5 cut(s)	37, 68, 71, 106, 489
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	559
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	3 cut(s)	187, 466, 521
VpaK11BI	GGWCC	2 cut(s)	31, 310
XhoI	CTCGAG	1 cut(s)	418
XspI	CTAG	3 cut(s)	438, 486, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.