Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Forward (+)

66561084 .. 66562143

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCCGCGTTGGGGTTTGAGAACTACAACTCAGCCGTGAGATCAGAGAGCTCAGTAGTAGTAGTTGTACTGGTGTTAATGTTAACAACAGCAACAACAACAGTTAAAGTCGTCGACGGAGGAGCGGTCGACGAATGTGCGCAGCAGCTAGCAGGGATGGCCACGTGTCTGCCTTACGTTGGGGGTGAAGCCATGGCTCCAACACCGGACTGTTGCGGTGGTCTGAAACAAGTCCTGAACAAAAATAAAACATGCCTCTGCGTTATCATTCAAGATCGCAACGACCCTGATTTGGGCCTGCAGATCAATGTTACTCTTGCTTTGGGCCTGCCTTCCGTCTGCCACGTCGCCGCCAATATCTCCAAGTGTCCCGAACTTCTACACTTGGACCCCAAATCACCAGAAGCTCAAGTGTTCTATCAGTTACTGAACAACTCTACGCAAACCGCCGCCAATGGTACAGCAGCAGCTGGAAGTCCCCTGAGTGGCATAAGTTCTAACAGCGGGGCAGCTCGACAGAATGGCGGCATGGTTTTGGTTGGATACTTCTGGGGCTTCACCTTCATGTTATATACAGTTTTGCTCATGTTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

198

Amino Acids

20.68

Weight (kDa)

4.97

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	33 - 123	1.1e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	46 - 120	7.2e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	141
AccBSI	CCGCTC	1 cut(s)	125
AccI	GTMKAC	2 cut(s)	114, 129
AccII	CGCG	1 cut(s)	8
AciI	CCGC	8 cut(s)	6, 125, 216, 351, 447, 450, 504, 525
AcoI	YGGCCR	2 cut(s)	3, 159
AcvI	CACGTG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	69, 460
AfiI	CCNNNNNNNGG	5 cut(s)	12, 179, 292, 293, 485
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	346
AluBI	AGCT	5 cut(s)	51, 148, 407, 470, 512
AluI	AGCT	5 cut(s)	51, 148, 407, 470, 512
Alw21I	GWGCWC	1 cut(s)	53
AlwNI	CAGNNNCTG	2 cut(s)	427, 470
AoxI	GGCC	4 cut(s)	3, 159, 295, 325
ApeKI	GCWGC	5 cut(s)	142, 145, 464, 467, 509
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	3 cut(s)	295, 325, 388
AsuHPI	GGTGA	3 cut(s)	197, 390, 550
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	53
BbrPI	CACGTG	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	5 cut(s)	154, 157, 476, 479, 521
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BciVI	GTATCC	1 cut(s)	536
BfaI	CTAG	2 cut(s)	149, 595
BfmI	CTRYAG	1 cut(s)	299
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	9 cut(s)	6, 143, 146, 351, 450, 465, 468, 510, 526
BlsI	GCNGC	9 cut(s)	7, 144, 147, 352, 451, 466, 469, 511, 527
Bme18I	GGWCC	1 cut(s)	388
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	295, 325, 388
BmiI	GGNNCC	2 cut(s)	198, 390
BmtI	GCTAGC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 179, 292, 293, 485
Bse1I	ACTGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	5 cut(s)	12, 179, 292, 293, 485
BseMII	CTCAG	3 cut(s)	45, 66, 473
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	5 cut(s)	154, 157, 476, 479, 521
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	4 cut(s)	5, 161, 297, 327
BsiEI	CGRYCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	2 cut(s)	354, 462
BslI	CCNNNNNNNGG	5 cut(s)	12, 179, 292, 293, 485
BsmFI	GGGAC	2 cut(s)	354, 462
BsnI	GGCC	4 cut(s)	5, 161, 297, 327
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	41, 274, 303
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	8 cut(s)	6, 125, 216, 351, 447, 450, 504, 525
BspANI	GGCC	4 cut(s)	5, 161, 297, 327
BspCNI	CTCAG	3 cut(s)	44, 65, 474
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	198, 390
BspMAI	CTGCAG	1 cut(s)	303
BspOI	GCTAGC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	41, 274, 303
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	103, 212, 577
BstBAI	YACGTR	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	150, 299, 329
BstDEI	CTNAG	3 cut(s)	31, 52, 482
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	3 cut(s)	44, 277, 306
BstMBI	GATC	3 cut(s)	41, 274, 303
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	299
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	5 cut(s)	154, 157, 476, 479, 521
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	4 cut(s)	5, 161, 297, 327
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	162
Cac8I	GCNNGC	3 cut(s)	150, 299, 329
CaiI	CAGNNNCTG	2 cut(s)	427, 470
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	3 cut(s)	295, 325, 388
Csp6I	GTAC	2 cut(s)	68, 459
CviAII	CATG	5 cut(s)	193, 252, 529, 565, 586
CviQI	GTAC	2 cut(s)	68, 459
DdeI	CTNAG	3 cut(s)	31, 52, 482
DpnI	GATC	3 cut(s)	43, 276, 305
DpnII	GATC	3 cut(s)	41, 274, 303
EaeI	YGGCCR	2 cut(s)	3, 159
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	51
Eco72I	CACGTG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	5 cut(s)	196, 255, 532, 568, 589
FaiI	YATR	8 cut(s)	194, 253, 491, 530, 566, 571, 573, 587
FaqI	GGGAC	2 cut(s)	354, 462
FatI	CATG	5 cut(s)	192, 251, 528, 564, 585
FauI	CCCGC	1 cut(s)	497
FblI	GTMKAC	2 cut(s)	114, 129
Fnu4HI	GCNGC	9 cut(s)	6, 143, 146, 351, 450, 465, 468, 510, 526
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	9 cut(s)	6, 143, 146, 351, 450, 465, 468, 510, 526
FspBI	CTAG	2 cut(s)	149, 595
FspI	TGCGCA	1 cut(s)	141
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	9 cut(s)	6, 143, 146, 351, 450, 465, 468, 510, 526
HaeIII	GGCC	4 cut(s)	5, 161, 297, 327
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	5 cut(s)	196, 255, 532, 568, 589
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	3 cut(s)	84, 115, 130
HindII	GTYRAC	3 cut(s)	84, 115, 130
HpaI	GTTAAC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	3 cut(s)	197, 390, 550
Hpy166II	GTNNAC	3 cut(s)	84, 115, 130
Hpy188I	TCNGA	2 cut(s)	46, 225
Hpy188III	TCNNGA	3 cut(s)	235, 272, 371
Hpy8I	GTNNAC	3 cut(s)	84, 115, 130
Hpy99I	CGWCG	4 cut(s)	116, 119, 134, 350
HpyAV	CCTTC	2 cut(s)	342, 571
HpyCH4III	ACNGT	3 cut(s)	103, 212, 577
HpyCH4IV	ACGT	3 cut(s)	164, 177, 345
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	31, 52, 482
HpySE526I	ACGT	3 cut(s)	164, 177, 345
Hsp92II	CATG	5 cut(s)	196, 255, 532, 568, 589
HspAI	GCGC	1 cut(s)	140
KspAI	GTTAAC	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	41, 274, 303
LmnI	GCTCC	2 cut(s)	122, 202
Lsp1109I	GCAGC	5 cut(s)	154, 157, 476, 479, 521
MaeI	CTAG	2 cut(s)	149, 595
MaeII	ACGT	3 cut(s)	164, 177, 345
MaeIII	GTNAC	2 cut(s)	310, 423
MalI	GATC	3 cut(s)	43, 276, 305
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	3 cut(s)	41, 274, 303
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	224, 520
MnlI	CCTC	2 cut(s)	113, 266
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	3 cut(s)	77, 83, 105
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	470, 504
MspI	CCGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	3 cut(s)	41, 274, 303
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	5 cut(s)	196, 255, 532, 568, 589
NlaIV	GGNNCC	2 cut(s)	198, 390
NsbI	TGCGCA	1 cut(s)	141
NspI	RCATGY	1 cut(s)	255
PkrI	GCNGC	9 cut(s)	7, 144, 147, 352, 451, 466, 469, 511, 527
PmaCI	CACGTG	1 cut(s)	165
PmlI	CACGTG	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	53
PspCI	CACGTG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	198, 390
PspPI	GGNCC	3 cut(s)	295, 325, 388
PstI	CTGCAG	1 cut(s)	303
PstNI	CAGNNNCTG	2 cut(s)	427, 470
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	2 cut(s)	69, 460
RsaNI	GTAC	2 cut(s)	68, 459
RseI	CAYNNNNRTG	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	53
SalI	GTCGAC	2 cut(s)	113, 128
SaqAI	TTAA	3 cut(s)	77, 83, 105
SatI	GCNGC	9 cut(s)	6, 143, 146, 351, 450, 465, 468, 510, 526
Sau3AI	GATC	3 cut(s)	41, 274, 303
Sau96I	GGNCC	3 cut(s)	295, 325, 388
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	9 cut(s)	53, 150, 167, 180, 348, 409, 472, 514, 563
SfcI	CTRYAG	1 cut(s)	299
SgrDI	CGTCGACG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
SsiI	CCGC	8 cut(s)	6, 125, 216, 351, 447, 450, 504, 525
SspMI	CTAG	2 cut(s)	149, 595
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	103, 212, 577
TaiI	ACGT	3 cut(s)	167, 180, 348
TaqI	TCGA	3 cut(s)	114, 129, 514
TatI	WGTACW	1 cut(s)	67
TauI	GCSGC	4 cut(s)	8, 353, 452, 528
Tru1I	TTAA	3 cut(s)	77, 83, 105
Tru9I	TTAA	3 cut(s)	77, 83, 105
TseI	GCWGC	5 cut(s)	142, 145, 464, 467, 509
TspDTI	ATGAA	2 cut(s)	553, 580
TspGWI	ACGGA	2 cut(s)	132, 325
VpaK11BI	GGWCC	1 cut(s)	388
XceI	RCATGY	1 cut(s)	255
XmiI	GTMKAC	2 cut(s)	114, 129
XspI	CTAG	2 cut(s)	149, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.