Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Reverse (-)

294385 .. 295361

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54400

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCGCGTTGGGGTTTGAGAACTACAAAGCCGTGAGATCACAGAGGTCAGTAGTAGTAGTTGTACTGGTGTTAATGTTAACAACAACAACAACAGTTAAAGTAGTCGACGGAGGAGCGGTCGACGAATGTGCGCAGCAGCTAGCAGGGATGGCCACTTGTCTGCCTTACGTTCAGGGTGAAGCCATGGCTCCAACACCGGACTGTTGCAGTGGTCTGAAACAAGTCCTGAGCACAAATAAAACGTGCCTCTGCGTTATCATTCAAGATCGCAACGACCCTGATTTGGGCCTGCAGATCAATGTCACTCTTGCTTTGGGCCTGCCTTCCGTCTGCCACGTCGCCGCCAATATCTCCAAGTGTCCCGAACTTCTACACTTGGATCCCAAATCACCAGAAGCTCAAGTGTTCTATCAGTTACAGAACAACTCTACGCAAACCGCCGCCAATGGTCCTGCTCCAGGTCCAAGTAGTACAGCAGCAGCTGGAGGTCCCGTGAGTGGCATAAGTTCTAACAGCGGGGCAGCTCGACAGAATGGCGGCATGTTTTTGGTTGGATACTCCTGGGGCTTCACCTTCATGTTATATACAGTTTTTGCTCATGTTCATCTAGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

206

Amino Acids

21.48

Weight (kDa)

5.71

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	30 - 121	5.5e-16	Probable lipid transfer
Tryp_alpha_amyl	PF00234	44 - 118	2.2e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	135
AccBSI	CCGCTC	1 cut(s)	119
AccI	GTMKAC	2 cut(s)	108, 123
AccII	CGCG	1 cut(s)	8
AciI	CCGC	7 cut(s)	6, 119, 345, 441, 444, 519, 540
AclWI	GGATC	2 cut(s)	377, 390
AcoI	YGGCCR	2 cut(s)	3, 153
AfaI	GTAC	2 cut(s)	66, 475
AfiI	CCNNNNNNNGG	5 cut(s)	12, 286, 287, 461, 500
AgsI	TTSAA	1 cut(s)	266
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	460, 563
AluBI	AGCT	4 cut(s)	142, 401, 485, 527
AluI	AGCT	4 cut(s)	142, 401, 485, 527
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	377, 390
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	4 cut(s)	3, 153, 289, 319
ApeKI	GCWGC	5 cut(s)	136, 139, 479, 482, 524
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	5 cut(s)	289, 319, 452, 464, 491
AsuHPI	GGTGA	3 cut(s)	191, 384, 565
AsuNHI	GCTAGC	1 cut(s)	142
AvaII	GGWCC	3 cut(s)	452, 464, 491
BalI	TGGCCA	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	5 cut(s)	148, 151, 491, 494, 536
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	2 cut(s)	462, 565
BciVI	GTATCC	1 cut(s)	551
BfaI	CTAG	2 cut(s)	143, 611
BfmI	CTRYAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	9 cut(s)	6, 137, 140, 345, 444, 480, 483, 525, 541
BlsI	GCNGC	9 cut(s)	7, 138, 141, 346, 445, 481, 484, 526, 542
Bme1390I	CCNGG	2 cut(s)	462, 565
Bme18I	GGWCC	3 cut(s)	452, 464, 491
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	5 cut(s)	289, 319, 452, 464, 491
BmiI	GGNNCC	3 cut(s)	192, 384, 493
BmrFI	CCNGG	2 cut(s)	462, 565
BmsI	GCATC	1 cut(s)	604
BmtI	GCTAGC	1 cut(s)	146
BpmI	CTGGAG	2 cut(s)	444, 507
Bpu10I	CCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	186, 564
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 480, 510
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 286, 287, 461, 500
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	462, 565
BseDI	CCNNGG	2 cut(s)	186, 564
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	5 cut(s)	12, 286, 287, 461, 500
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	5 cut(s)	148, 151, 491, 494, 536
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	5, 155, 291, 321
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	2 cut(s)	348, 477
BslI	CCNNNNNNNGG	5 cut(s)	12, 286, 287, 461, 500
BsmFI	GGGAC	2 cut(s)	348, 477
BsnI	GGCC	4 cut(s)	5, 155, 291, 321
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	4 cut(s)	38, 268, 297, 382
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	7 cut(s)	6, 119, 345, 441, 444, 519, 540
BspANI	GGCC	4 cut(s)	5, 155, 291, 321
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	192, 384, 493
BspMAI	CTGCAG	1 cut(s)	297
BspOI	GCTAGC	1 cut(s)	146
BspPI	GGATC	2 cut(s)	377, 390
BsrBI	CCGCTC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	186, 564
BssMI	GATC	4 cut(s)	38, 268, 297, 382
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	462, 565
Bst4CI	ACNGT	3 cut(s)	97, 206, 592
BstC8I	GCNNGC	3 cut(s)	144, 293, 323
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	186
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	156
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	41, 271, 300, 385
BstMBI	GATC	4 cut(s)	38, 268, 297, 382
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	462, 565
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	460, 563
BstSFI	CTRYAG	1 cut(s)	293
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	5 cut(s)	148, 151, 491, 494, 536
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	4 cut(s)	5, 155, 291, 321
BtgI	CCRYGG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	144, 293, 323
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	5 cut(s)	289, 319, 452, 464, 491
Csp6I	GTAC	2 cut(s)	65, 474
CviAII	CATG	4 cut(s)	187, 544, 580, 602
CviQI	GTAC	2 cut(s)	65, 474
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	4 cut(s)	40, 270, 299, 384
DpnII	GATC	4 cut(s)	38, 268, 297, 382
EaeI	YGGCCR	2 cut(s)	3, 153
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	3 cut(s)	452, 464, 491
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	460, 563
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	4 cut(s)	190, 547, 583, 605
FaiI	YATR	7 cut(s)	188, 506, 545, 581, 586, 588, 603
FaqI	GGGAC	2 cut(s)	348, 477
FatI	CATG	4 cut(s)	186, 543, 579, 601
FauI	CCCGC	1 cut(s)	512
FblI	GTMKAC	2 cut(s)	108, 123
Fnu4HI	GCNGC	9 cut(s)	6, 137, 140, 345, 444, 480, 483, 525, 541
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	9 cut(s)	6, 137, 140, 345, 444, 480, 483, 525, 541
FspBI	CTAG	2 cut(s)	143, 611
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	9 cut(s)	6, 137, 140, 345, 444, 480, 483, 525, 541
GsuI	CTGGAG	2 cut(s)	444, 507
HaeIII	GGCC	4 cut(s)	5, 155, 291, 321
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	4 cut(s)	190, 547, 583, 605
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	3 cut(s)	81, 109, 124
HindII	GTYRAC	3 cut(s)	81, 109, 124
HpaI	GTTAAC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	3 cut(s)	191, 384, 565
Hpy166II	GTNNAC	3 cut(s)	81, 109, 124
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	4 cut(s)	229, 266, 365, 611
Hpy8I	GTNNAC	3 cut(s)	81, 109, 124
Hpy99I	CGWCG	3 cut(s)	113, 128, 344
HpyAV	CCTTC	2 cut(s)	336, 586
HpyCH4III	ACNGT	3 cut(s)	97, 206, 592
HpyCH4IV	ACGT	3 cut(s)	171, 245, 339
HpyCH4V	TGCA	2 cut(s)	210, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	3 cut(s)	171, 245, 339
Hsp92II	CATG	4 cut(s)	190, 547, 583, 605
HspAI	GCGC	1 cut(s)	134
KspAI	GTTAAC	1 cut(s)	81
Kzo9I	GATC	4 cut(s)	38, 268, 297, 382
LmnI	GCTCC	3 cut(s)	116, 196, 463
Lsp1109I	GCAGC	5 cut(s)	148, 151, 491, 494, 536
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	2 cut(s)	143, 611
MaeII	ACGT	3 cut(s)	171, 245, 339
MaeIII	GTNAC	2 cut(s)	304, 417
MalI	GATC	4 cut(s)	40, 270, 299, 384
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	4 cut(s)	38, 268, 297, 382
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	236
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	2 cut(s)	218, 535
MnlI	CCTC	4 cut(s)	39, 107, 260, 482
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	3 cut(s)	74, 80, 99
MslI	CAYNNNNRTG	2 cut(s)	578, 612
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	2 cut(s)	485, 519
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	462, 565
MvaI	CCWGG	2 cut(s)	462, 565
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	4 cut(s)	38, 268, 297, 382
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	4 cut(s)	190, 547, 583, 605
NlaIV	GGNNCC	3 cut(s)	192, 384, 493
NmuCI	GTSAC	1 cut(s)	304
NsbI	TGCGCA	1 cut(s)	135
NspI	RCATGY	1 cut(s)	547
PkrI	GCNGC	9 cut(s)	7, 138, 141, 346, 445, 481, 484, 526, 542
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	2 cut(s)	460, 563
PspGI	CCWGG	2 cut(s)	460, 563
PspN4I	GGNNCC	3 cut(s)	192, 384, 493
PspPI	GGNCC	5 cut(s)	289, 319, 452, 464, 491
PspPPI	RGGWCCY	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	66, 475
RsaNI	GTAC	2 cut(s)	65, 474
RseI	CAYNNNNRTG	2 cut(s)	578, 612
SalI	GTCGAC	2 cut(s)	107, 122
SaqAI	TTAA	3 cut(s)	74, 80, 99
SatI	GCNGC	9 cut(s)	6, 137, 140, 345, 444, 480, 483, 525, 541
Sau3AI	GATC	4 cut(s)	38, 268, 297, 382
Sau96I	GGNCC	5 cut(s)	289, 319, 452, 464, 491
ScrFI	CCNGG	2 cut(s)	462, 565
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	3 cut(s)	452, 464, 491
SmiMI	CAYNNNNRTG	2 cut(s)	578, 612
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
SsiI	CCGC	7 cut(s)	6, 119, 345, 441, 444, 519, 540
SspMI	CTAG	2 cut(s)	143, 611
StyD4I	CCNGG	2 cut(s)	460, 563
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	97, 206, 592
TaiI	ACGT	3 cut(s)	174, 248, 342
TaqI	TCGA	3 cut(s)	108, 123, 529
TatI	WGTACW	2 cut(s)	64, 473
TauI	GCSGC	4 cut(s)	8, 347, 446, 543
Tru1I	TTAA	3 cut(s)	74, 80, 99
Tru9I	TTAA	3 cut(s)	74, 80, 99
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	5 cut(s)	136, 139, 479, 482, 524
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	568, 596
TspGWI	ACGGA	2 cut(s)	126, 319
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	3 cut(s)	452, 464, 491
XagI	CCTNNNNNAGG	1 cut(s)	459
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	1 cut(s)	547
XmiI	GTMKAC	2 cut(s)	108, 123
XspI	CTAG	2 cut(s)	143, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.