Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Forward (+)

37433201 .. 37434081

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1320100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCCACGTGTCCGCCTTACGTTGGAGGTCAAGCCAAGGCTCCTACACCAGACTGTTGCACTGGTTTCAAACAAGTGGTCAACAACAATAAGAAGTGCCTTTGTGTTATCATTAAAGATCGCAATGATCCTGAACTCGGTCTACAGATGAATGTAACGCTTGCTTTAGGTCTGCCTGCTGTTTGCAAGGCCCCTGCCAATGTCTCCAAGTGTCCCGAACTTCTGCATTTGGATCCTAAATCACCAGAAGCTCAAGCTTTCTATCAATTGGAAGGCAACTCTACTAAAACTGCCAGCAGTCTTGCTCCCAGTACTACTGTGGAGGGTCCAACGATTGCCAGTATGGGGTCAAGATCTAGCAGTGGGGCTGCTCGACAGAATATCGTCGGTCTGTTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

134

Amino Acids

13.84

Weight (kDa)

8.5

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tryp_alpha_amyl	PF00234	1 - 67	1.1e-08	Protease inhibitor/seed storage/LTP family
LTP_2	PF14368	3 - 71	2.7e-11	Probable lipid transfer

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	142
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	3 cut(s)	122, 227, 240
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	1 cut(s)	9
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	3 cut(s)	23, 137, 345
AflIII	ACRYGT	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	2 cut(s)	251, 257
AluI	AGCT	2 cut(s)	251, 257
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	3 cut(s)	122, 227, 240
AoxI	GGCC	2 cut(s)	3, 189
ApeKI	GCWGC	1 cut(s)	368
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspS9I	GGNCC	2 cut(s)	190, 326
AsuHPI	GGTGA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	232
BbrPI	CACGTG	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	143
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmcAI	AGTACT	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	190, 326
BmiI	GGNNCC	4 cut(s)	42, 192, 234, 327
BmrI	ACTGGG	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 137, 345
Bse1I	ACTGG	3 cut(s)	67, 309, 339
Bse3DI	GCAATG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	23, 137, 345
BseMI	GCAATG	1 cut(s)	130
BseNI	ACTGG	3 cut(s)	67, 309, 339
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	2 cut(s)	5, 191
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	3 cut(s)	23, 137, 345
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	5, 191
Bsp143I	GATC	4 cut(s)	118, 127, 232, 353
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	5, 191
BspLI	GGNNCC	4 cut(s)	42, 192, 234, 327
BspPI	GGATC	3 cut(s)	122, 227, 240
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	3 cut(s)	67, 309, 339
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	4 cut(s)	118, 127, 232, 353
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	56, 319
BstBAI	YACGTR	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	162, 177, 295
BstKTI	GATC	4 cut(s)	121, 130, 235, 356
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	4 cut(s)	118, 127, 232, 353
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	232, 353
BstYI	RGATCY	2 cut(s)	232, 353
BsuRI	GGCC	2 cut(s)	5, 191
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	60, 367
Cac8I	GCNNGC	3 cut(s)	162, 177, 295
Cfr13I	GGNCC	2 cut(s)	190, 326
Csp6I	GTAC	1 cut(s)	312
CviJI	RGCY	7 cut(s)	5, 35, 41, 191, 251, 257, 368
CviKI_1	RGCY	7 cut(s)	5, 35, 41, 191, 251, 257, 368
CviQI	GTAC	1 cut(s)	312
DpnI	GATC	4 cut(s)	120, 129, 234, 355
DpnII	GATC	4 cut(s)	118, 127, 232, 353
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	326
Eco72I	CACGTG	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaiI	YATR	1 cut(s)	344
FaqI	GGGAC	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	5, 191
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	255
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	2 cut(s)	82, 143
Hpy188III	TCNNGA	3 cut(s)	131, 215, 351
Hpy8I	GTNNAC	2 cut(s)	82, 143
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	56, 319
HpyCH4IV	ACGT	2 cut(s)	8, 21
HpyCH4V	TGCA	4 cut(s)	60, 186, 226, 397
HpySE526I	ACGT	2 cut(s)	8, 21
Kzo9I	GATC	4 cut(s)	118, 127, 232, 353
LmnI	GCTCC	2 cut(s)	46, 310
LpnPI	CCDG	9 cut(s)	48, 63, 144, 189, 207, 258, 307, 322, 352
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	2 cut(s)	8, 21
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	4 cut(s)	120, 129, 234, 355
MboI	GATC	4 cut(s)	118, 127, 232, 353
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	2 cut(s)	232, 353
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	4, 353
MnlI	CCTC	2 cut(s)	20, 316
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	266
NdeII	GATC	4 cut(s)	118, 127, 232, 353
NlaIV	GGNNCC	4 cut(s)	42, 192, 234, 327
PkrI	GCNGC	1 cut(s)	370
PmaCI	CACGTG	1 cut(s)	9
PmlI	CACGTG	1 cut(s)	9
Ppu21I	YACGTR	1 cut(s)	9
PspCI	CACGTG	1 cut(s)	9
PspN4I	GGNNCC	4 cut(s)	42, 192, 234, 327
PspPI	GGNCC	2 cut(s)	190, 326
PsrI	GAACNNNNNNTAC	2 cut(s)	126, 158
PsuI	RGATCY	2 cut(s)	232, 353
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	118, 127, 232, 353
Sau96I	GGNCC	2 cut(s)	190, 326
ScaI	AGTACT	1 cut(s)	313
SetI	ASST	6 cut(s)	11, 24, 31, 172, 253, 259
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	266
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	56, 319
TaiI	ACGT	2 cut(s)	11, 24
TaqI	TCGA	1 cut(s)	373
TaqII	GACCGA	2 cut(s)	128, 377
TasI	AATT	1 cut(s)	266
TatI	WGTACW	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	67, 367
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	67, 367
VpaK11BI	GGWCC	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.