Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Reverse (-)

77298 .. 78381

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCCGCGTTGGGGTTTGAGAACTACAACTCAGCCGTGAGATCACAGAGTTCAGTAGTAGTAGTTGTACTGGTGTTAATGTTAACAACAACAACAACAGTTAAAGTAGTCGACGGAGGAGCGGTCGACGAATGCGCGCAGCAGCTAGTAGGGATGGCCACGTGTCTGCCTTACGTTGGGGGTGAAGCCATGGCTCCAACACCGGACTGTTGCAGTGGTCTGAAACAAGTCCTCAACAAAAATAAAACGTGCCTCTGCGTTATCATTCAAGATCGCAACGACCCTGATTTGGGCCTAAAGATCAATGTCACTCTCGCTTTGGGCCTGCCTTCCGTCTGCCACGTCGCCGCCAATATCTCCAAGTGTCCCGAACTTCTACACTTGGATCCCAAATCACCAGAAGCTCAAGTGTTCTATCAGTTACAGAACAACTCTACGCAAACCGCCGCCAATGGTCCTGCTCCGGGTCCAAGTAGTATGTACAATAAATATATCATTGAGATTGCAGATAATTTGGGGCTGTGCCCAAGATTGAAAGTGATCGTTATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

184

Amino Acids

19.52

Weight (kDa)

6.07

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	31 - 122	1.4e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	45 - 119	3.6e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	2 cut(s)	111, 126
AccII	CGCG	2 cut(s)	8, 137
AciI	CCGC	5 cut(s)	6, 122, 348, 444, 447
AclWI	GGATC	2 cut(s)	380, 393
AcoI	YGGCCR	2 cut(s)	3, 156
AcvI	CACGTG	1 cut(s)	162
AfaI	GTAC	2 cut(s)	69, 482
AfiI	CCNNNNNNNGG	5 cut(s)	12, 176, 289, 290, 464
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	269, 535
AjiI	CACGTC	1 cut(s)	343
AluBI	AGCT	2 cut(s)	145, 404
AluI	AGCT	2 cut(s)	145, 404
AlwI	GGATC	2 cut(s)	380, 393
AoxI	GGCC	4 cut(s)	3, 156, 292, 322
ApeKI	GCWGC	2 cut(s)	139, 142
AspLEI	GCGC	2 cut(s)	137, 139
AspS9I	GGNCC	4 cut(s)	292, 322, 455, 467
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	194, 387
AvaII	GGWCC	2 cut(s)	455, 467
BaeGI	GKGCMC	1 cut(s)	527
BalI	TGGCCA	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	385
BbrPI	CACGTG	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	151, 154
BccI	CCATC	1 cut(s)	148
BceAI	ACGGC	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	465
BfaI	CTAG	1 cut(s)	146
BisI	GCNGC	5 cut(s)	6, 140, 143, 348, 447
BlsI	GCNGC	5 cut(s)	7, 141, 144, 349, 448
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	2 cut(s)	455, 467
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	4 cut(s)	292, 322, 455, 467
BmiI	GGNNCC	3 cut(s)	195, 387, 468
BmrFI	CCNGG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 176, 289, 290, 464
Bse1I	ACTGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	5 cut(s)	12, 176, 289, 290, 464
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	75
BsePI	GCGCGC	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	2 cut(s)	151, 154
Bsh1236I	CGCG	2 cut(s)	8, 137
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	4 cut(s)	5, 158, 294, 324
BsiEI	CGRYCG	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	203, 464
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	5 cut(s)	12, 176, 289, 290, 464
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	5, 158, 294, 324
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	5 cut(s)	41, 271, 300, 385, 540
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	5 cut(s)	6, 122, 348, 444, 447
BspANI	GGCC	4 cut(s)	5, 158, 294, 324
BspCNI	CTCAG	1 cut(s)	44
BspFNI	CGCG	2 cut(s)	8, 137
BspLI	GGNNCC	3 cut(s)	195, 387, 468
BspPI	GGATC	2 cut(s)	380, 393
BsrBI	CCGCTC	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	189
BssHII	GCGCGC	1 cut(s)	135
BssMI	GATC	5 cut(s)	41, 271, 300, 385, 540
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	100, 209
BstAUI	TGTACA	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	137, 326
BstDEI	CTNAG	1 cut(s)	31
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	2 cut(s)	8, 137
BstHHI	GCGC	2 cut(s)	137, 139
BstKTI	GATC	5 cut(s)	44, 274, 303, 388, 543
BstMBI	GATC	5 cut(s)	41, 271, 300, 385, 540
BstMCI	CGRYCG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	463
BstSLI	GKGCMC	1 cut(s)	527
BstUI	CGCG	2 cut(s)	8, 137
BstV1I	GCAGC	2 cut(s)	151, 154
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	5, 158, 294, 324
BtgI	CCRYGG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	137, 326
CfoI	GCGC	2 cut(s)	137, 139
Cfr13I	GGNCC	4 cut(s)	292, 322, 455, 467
Csp6I	GTAC	2 cut(s)	68, 481
CviAII	CATG	1 cut(s)	190
CviQI	GTAC	2 cut(s)	68, 481
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	5 cut(s)	43, 273, 302, 387, 542
DpnII	GATC	5 cut(s)	41, 271, 300, 385, 540
EaeI	YGGCCR	2 cut(s)	3, 156
Eco130I	CCWWGG	1 cut(s)	189
Eco47I	GGWCC	2 cut(s)	455, 467
Eco72I	CACGTG	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	193
FaiI	YATR	3 cut(s)	191, 479, 492
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	1 cut(s)	189
FblI	GTMKAC	2 cut(s)	111, 126
Fnu4HI	GCNGC	5 cut(s)	6, 140, 143, 348, 447
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	5 cut(s)	6, 140, 143, 348, 447
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	2 cut(s)	136, 138
GluI	GCNGC	5 cut(s)	6, 140, 143, 348, 447
HaeIII	GGCC	4 cut(s)	5, 158, 294, 324
HapII	CCGG	2 cut(s)	203, 464
HhaI	GCGC	2 cut(s)	137, 139
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	2 cut(s)	135, 137
HinP1I	GCGC	2 cut(s)	135, 137
HincII	GTYRAC	3 cut(s)	84, 112, 127
HindII	GTYRAC	3 cut(s)	84, 112, 127
HpaI	GTTAAC	1 cut(s)	84
HpaII	CCGG	2 cut(s)	203, 464
HphI	GGTGA	2 cut(s)	194, 387
Hpy166II	GTNNAC	3 cut(s)	84, 112, 127
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	2 cut(s)	269, 368
Hpy8I	GTNNAC	3 cut(s)	84, 112, 127
Hpy99I	CGWCG	3 cut(s)	116, 131, 347
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	2 cut(s)	100, 209
HpyCH4IV	ACGT	4 cut(s)	161, 174, 248, 342
HpyCH4V	TGCA	2 cut(s)	213, 506
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	4 cut(s)	161, 174, 248, 342
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	2 cut(s)	135, 137
KspAI	GTTAAC	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	41, 271, 300, 385, 540
LmnI	GCTCC	3 cut(s)	119, 199, 466
LpnPI	CCDG	7 cut(s)	56, 216, 297, 338, 411, 471, 477
Lsp1109I	GCAGC	2 cut(s)	151, 154
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	4 cut(s)	161, 174, 248, 342
MaeIII	GTNAC	2 cut(s)	307, 420
MalI	GATC	5 cut(s)	43, 273, 302, 387, 542
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	5 cut(s)	41, 271, 300, 385, 540
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	527
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	1 cut(s)	511
MluNI	TGGCCA	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	3 cut(s)	110, 242, 263
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	4 cut(s)	77, 83, 102, 553
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	2 cut(s)	203, 464
MspR9I	CCNGG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	137
MvnI	CGCG	2 cut(s)	8, 137
NciI	CCSGG	1 cut(s)	465
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	5 cut(s)	41, 271, 300, 385, 540
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	3 cut(s)	195, 387, 468
NmuCI	GTSAC	1 cut(s)	307
PauI	GCGCGC	1 cut(s)	135
PctI	GAATGC	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	7, 141, 144, 349, 448
PmaCI	CACGTG	1 cut(s)	162
PmlI	CACGTG	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	162
PspCI	CACGTG	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	195, 387, 468
PspPI	GGNCC	4 cut(s)	292, 322, 455, 467
PsuI	RGATCY	1 cut(s)	385
PteI	GCGCGC	1 cut(s)	135
RsaI	GTAC	2 cut(s)	69, 482
RsaNI	GTAC	2 cut(s)	68, 481
SalI	GTCGAC	2 cut(s)	110, 125
SaqAI	TTAA	4 cut(s)	77, 83, 102, 553
SatI	GCNGC	5 cut(s)	6, 140, 143, 348, 447
Sau3AI	GATC	5 cut(s)	41, 271, 300, 385, 540
Sau96I	GGNCC	4 cut(s)	292, 322, 455, 467
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	527
SetI	ASST	6 cut(s)	147, 164, 177, 251, 345, 406
SinI	GGWCC	2 cut(s)	455, 467
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	1 cut(s)	511
SsiI	CCGC	5 cut(s)	6, 122, 348, 444, 447
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	463
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	100, 209
TaiI	ACGT	4 cut(s)	164, 177, 251, 345
TaqI	TCGA	2 cut(s)	111, 126
TasI	AATT	1 cut(s)	511
TatI	WGTACW	2 cut(s)	67, 480
TauI	GCSGC	3 cut(s)	8, 350, 449
Tru1I	TTAA	4 cut(s)	77, 83, 102, 553
Tru9I	TTAA	4 cut(s)	77, 83, 102, 553
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	139, 142
Tsp45I	GTSAC	1 cut(s)	307
TspGWI	ACGGA	2 cut(s)	129, 322
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	455, 467
XmiI	GTMKAC	2 cut(s)	111, 126
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.