Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Reverse (-)

18307223 .. 18308494

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGTCACGGAAGATTAACCTAATGGCGACAGCAATAGCTTTAATAGTGGTGGCTATGGTGGTGGCAGCTGCTGATGATAAGACGAAAGACAAGGAGGAGTGTACGGAGCAGCTGGTCGGTATGGCCACGTGTCTTCCTTACGTGCAAGGACAAGCAAAATCTCCGACGCCAGACTGTTGCTCCGGTCTCAAACAAGTTCTTAATTCAAACAAGAAGTGTCTTTGTGTGATCATTCAAGACAGGAATGATCCTGATTTGGGTCTCCAGATCAACGTCTCTCTAGCTCTCGCACTTCCTTCTGTTTGTCACGCCGCTGCTGACGTCACTAAATGCCCTGCTTTGCTTCACTTGGATCCGAATTCTCCAGATGCCCAAGTCTTCTACCAGCTAGCTAAAGGTTTAAACAAAACCGGCCCAGCCTCTGCTCCCACTGGCTCGTCCCCTGGACCTATAAGCATTTCTCCGACTTCAGGATCCGATGATGGTAACAACAGTGGTCGAACGACCTCTGTGCCAGGCAGGAACCACGCTCAAAGCTTCTATAAACAATGGCTGGGGCTCGAAGTTGTGTTCCATTTCTTCGTAATTTTTTATATTTTCATCCTCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

204

Amino Acids

21.71

Weight (kDa)

6.39

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	17 - 112	2.1e-16	Probable lipid transfer
Tryp_alpha_amyl	PF00234	35 - 112	3.2e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	327
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	5 cut(s)	245, 350, 363, 471, 484
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	456
AcvI	CACGTG	1 cut(s)	132
AcyI	GRCGYC	2 cut(s)	170, 324
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	260, 473
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	210, 239
AjnI	CCWGG	2 cut(s)	445, 517
AluBI	AGCT	7 cut(s)	41, 71, 115, 287, 391, 395, 540
AluI	AGCT	7 cut(s)	41, 71, 115, 287, 391, 395, 540
Alw26I	GTCTC	3 cut(s)	194, 269, 283
AlwI	GGATC	5 cut(s)	245, 350, 363, 471, 484
AlwNI	CAGNNNCTG	2 cut(s)	74, 425
AoxI	GGCC	2 cut(s)	126, 415
ApeKI	GCWGC	4 cut(s)	68, 71, 112, 317
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	416, 449
AsuNHI	GCTAGC	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	128
BamHI	GGATCC	2 cut(s)	355, 476
BanII	GRGCYC	1 cut(s)	564
BbrPI	CACGTG	1 cut(s)	132
BbsI	GAAGAC	2 cut(s)	128, 373
BbvI	GCAGC	4 cut(s)	58, 80, 124, 304
BccI	CCATC	1 cut(s)	479
BcgI	CGANNNNNNTGC	2 cut(s)	496, 530
BciT130I	CCWGG	2 cut(s)	447, 519
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	3 cut(s)	194, 269, 283
BfaI	CTAG	2 cut(s)	284, 392
BisI	GCNGC	5 cut(s)	69, 72, 113, 315, 318
BlsI	GCNGC	5 cut(s)	70, 73, 114, 316, 319
Bme1390I	CCNGG	2 cut(s)	447, 519
Bme18I	GGWCC	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	416, 449
BmiI	GGNNCC	3 cut(s)	357, 478, 527
BmrFI	CCNGG	2 cut(s)	447, 519
BmsI	GCATC	1 cut(s)	361
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	2 cut(s)	128, 373
BpmI	CTGGAG	2 cut(s)	251, 351
BsaAI	YACGTR	2 cut(s)	132, 145
BsaHI	GRCGYC	2 cut(s)	170, 324
BsaI	GGTCTC	2 cut(s)	194, 269
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 473
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	439
BseBI	CCWGG	2 cut(s)	447, 519
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	260, 473
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	4 cut(s)	58, 80, 124, 304
BseYI	CCCAGC	2 cut(s)	418, 556
BshFI	GGCC	2 cut(s)	128, 417
BsiSI	CCGG	2 cut(s)	186, 414
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	2 cut(s)	260, 473
BsmAI	GTCTC	3 cut(s)	194, 269, 283
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	2 cut(s)	128, 417
Bso31I	GGTCTC	2 cut(s)	194, 269
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	5 cut(s)	231, 250, 270, 355, 476
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	2 cut(s)	128, 417
BspLI	GGNNCC	3 cut(s)	357, 478, 527
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	5 cut(s)	245, 350, 363, 471, 484
BspTNI	GGTCTC	2 cut(s)	194, 269
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	5 cut(s)	231, 250, 270, 355, 476
BssNI	GRCGYC	2 cut(s)	170, 324
Bst2UI	CCWGG	2 cut(s)	447, 519
Bst4CI	ACNGT	2 cut(s)	179, 497
BstACI	GRCGYC	2 cut(s)	170, 324
BstBAI	YACGTR	2 cut(s)	132, 145
BstC8I	GCNNGC	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	603
BstKTI	GATC	5 cut(s)	234, 253, 273, 358, 479
BstMAI	GTCTC	3 cut(s)	194, 269, 283
BstMBI	GATC	5 cut(s)	231, 250, 270, 355, 476
BstNI	CCWGG	2 cut(s)	447, 519
BstSCI	CCNGG	2 cut(s)	445, 517
BstV1I	GCAGC	4 cut(s)	58, 80, 124, 304
BstV2I	GAAGAC	2 cut(s)	128, 373
BstX2I	RGATCY	2 cut(s)	355, 476
BstYI	RGATCY	2 cut(s)	355, 476
BsuRI	GGCC	2 cut(s)	128, 417
BtsCI	GGATG	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	432, 502
Cac8I	GCNNGC	1 cut(s)	393
CaiI	CAGNNNCTG	2 cut(s)	74, 425
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	416, 449
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	105
CviQI	GTAC	1 cut(s)	105
DpnI	GATC	5 cut(s)	233, 252, 272, 357, 478
DpnII	GATC	5 cut(s)	231, 250, 270, 355, 476
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	564
Eco31I	GGTCTC	2 cut(s)	194, 269
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	456
Eco72I	CACGTG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	445, 517
EcoT38I	GRGCYC	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	283
FaiI	YATR	6 cut(s)	59, 125, 455, 546, 597, 613
FaqI	GGGAC	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	5 cut(s)	69, 72, 113, 315, 318
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	5 cut(s)	69, 72, 113, 315, 318
FspBI	CTAG	2 cut(s)	284, 392
GluI	GCNGC	5 cut(s)	69, 72, 113, 315, 318
GsaI	CCCAGC	2 cut(s)	422, 560
GsuI	CTGGAG	2 cut(s)	251, 351
HaeIII	GGCC	2 cut(s)	128, 417
HapII	CCGG	2 cut(s)	186, 414
HgaI	GACGC	1 cut(s)	178
Hin1I	GRCGYC	2 cut(s)	170, 324
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	186, 414
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	4 cut(s)	168, 360, 468, 481
Hpy188III	TCNNGA	5 cut(s)	239, 254, 268, 368, 474
Hpy8I	GTNNAC	1 cut(s)	105
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	2 cut(s)	179, 497
HpyCH4IV	ACGT	4 cut(s)	131, 144, 276, 324
HpyCH4V	TGCA	1 cut(s)	148
HpySE526I	ACGT	4 cut(s)	131, 144, 276, 324
Hsp92I	GRCGYC	2 cut(s)	170, 324
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	231, 250, 270, 355, 476
LmnI	GCTCC	3 cut(s)	109, 188, 433
Lsp1109I	GCAGC	4 cut(s)	58, 80, 124, 304
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	2 cut(s)	284, 392
MaeII	ACGT	4 cut(s)	131, 144, 276, 324
MaeIII	GTNAC	4 cut(s)	6, 308, 325, 488
MalI	GATC	5 cut(s)	233, 252, 272, 357, 478
MboI	GATC	5 cut(s)	231, 250, 270, 355, 476
MboII	GAAGA	4 cut(s)	25, 128, 373, 574
MflI	RGATCY	2 cut(s)	355, 476
MhlI	GDGCHC	1 cut(s)	564
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	3 cut(s)	205, 361, 588
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	191, 491
MnlI	CCTC	3 cut(s)	91, 433, 520
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	4 cut(s)	18, 44, 204, 404
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	3 cut(s)	71, 115, 317
MspI	CCGG	2 cut(s)	186, 414
MspR9I	CCNGG	2 cut(s)	447, 519
MssI	GTTTAAAC	1 cut(s)	405
MvaI	CCWGG	2 cut(s)	447, 519
NdeII	GATC	5 cut(s)	231, 250, 270, 355, 476
NheI	GCTAGC	1 cut(s)	391
NlaIV	GGNNCC	3 cut(s)	357, 478, 527
NmuCI	GTSAC	3 cut(s)	6, 308, 325
PkrI	GCNGC	5 cut(s)	70, 73, 114, 316, 319
PleI	GAGTC	1 cut(s)	13
PmaCI	CACGTG	1 cut(s)	132
PmeI	GTTTAAAC	1 cut(s)	405
PmlI	CACGTG	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	2 cut(s)	132, 145
Psp6I	CCWGG	2 cut(s)	445, 517
PspCI	CACGTG	1 cut(s)	132
PspFI	CCCAGC	2 cut(s)	418, 556
PspGI	CCWGG	2 cut(s)	445, 517
PspN4I	GGNNCC	3 cut(s)	357, 478, 527
PspPI	GGNCC	2 cut(s)	416, 449
PstNI	CAGNNNCTG	2 cut(s)	74, 425
PsuI	RGATCY	2 cut(s)	355, 476
PvuII	CAGCTG	2 cut(s)	71, 115
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	4 cut(s)	18, 44, 204, 404
SatI	GCNGC	5 cut(s)	69, 72, 113, 315, 318
Sau3AI	GATC	5 cut(s)	231, 250, 270, 355, 476
Sau96I	GGNCC	2 cut(s)	416, 449
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	447, 519
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	1 cut(s)	361
SinI	GGWCC	1 cut(s)	449
Sse9I	AATT	3 cut(s)	205, 361, 588
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	2 cut(s)	284, 392
StyD4I	CCNGG	2 cut(s)	445, 517
TaaI	ACNGT	2 cut(s)	179, 497
TaiI	ACGT	4 cut(s)	134, 147, 279, 327
TaqI	TCGA	2 cut(s)	502, 564
TasI	AATT	3 cut(s)	205, 361, 588
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	4 cut(s)	18, 44, 204, 404
Tru9I	TTAA	4 cut(s)	18, 44, 204, 404
TscAI	CASTG	2 cut(s)	439, 502
TseFI	GTSAC	3 cut(s)	6, 308, 325
TseI	GCWGC	4 cut(s)	68, 71, 112, 317
Tsp45I	GTSAC	3 cut(s)	6, 308, 325
TspDTI	ATGAA	1 cut(s)	592
TspGWI	ACGGA	2 cut(s)	25, 122
TspRI	CASTG	2 cut(s)	439, 502
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	361
XspI	CTAG	2 cut(s)	284, 392
ZraI	GACGTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.