Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Forward (+)

114083 .. 116032

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCATTAGGGTTTGGCTACTTGGTCCTAGTCCTGTTAGTTATGATATCAAGTTATACAGCGAGCTTCGCAACGGCAGATTCAGCAAAAGACAGAGAGGAATGTACGCAGCAGTTAGTAGGGATGGCCACGTGTCTGCCTTACGTTGGAGGTCAAGCCAAGGCTCCAACACCAGACTGTTGCAGTGGTCTCAAACAAGTGCTCAACAACAATAAGAAGTGCCTTTGTGTTATCATTAAAGATCGCAATGATCCTGAACTTGGTCTGCAGATGAATGTAACGCTTGCTTTGGGCCTGCCTTCCGTTTGCAAGGCCCCTGCCAATGTCTCCAAGTGTCCCGAACTTCTGCATTTGGATCCTAAATCACCAGAAGCTCAAGTTTTCTATCAACTGGAAGGCAACTCTACTAAAACTGCCAGCAGTCTTGCTCCAAGTCCTAGCGTGGATGGGCCGACGAGTGCCAAAAGTGTGGGGTCAAGTTCTAGCAGTGGCGCTGCCCGACAGGATATTGTCGGTCTGTTACGGTGGAACGAAATGGTTATGATTAGAGACTCGTCTTGGTGCTTCGTCTTAATGGTTTTATACTTGTTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

199

Amino Acids

21.12

Weight (kDa)

6.55

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	245, 350, 363
AcoI	YGGCCR	1 cut(s)	126
AcvI	CACGTG	1 cut(s)	132
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	146, 260
AflIII	ACRYGT	1 cut(s)	131
AluBI	AGCT	2 cut(s)	66, 374
AluI	AGCT	2 cut(s)	66, 374
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	3 cut(s)	194, 331, 543
AlwI	GGATC	3 cut(s)	245, 350, 363
AoxI	GGCC	4 cut(s)	126, 292, 312, 449
ApeKI	GCWGC	2 cut(s)	109, 494
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	4 cut(s)	25, 292, 313, 449
AsuHPI	GGTGA	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	355
BbrPI	CACGTG	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	121, 481
BccI	CCATC	2 cut(s)	118, 440
BceAI	ACGGC	1 cut(s)	90
BcoDI	GTCTC	3 cut(s)	194, 331, 543
BfaI	CTAG	4 cut(s)	29, 438, 483, 595
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	495
BisI	GCNGC	2 cut(s)	110, 495
BlsI	GCNGC	2 cut(s)	111, 496
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	4 cut(s)	25, 292, 313, 449
BmiI	GGNNCC	3 cut(s)	165, 315, 357
BpuEI	CTTGAG	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 260
Bse1I	ACTGG	1 cut(s)	396
Bse3DI	GCAATG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	129, 451
BseLI	CCNNNNNNNGG	2 cut(s)	146, 260
BseMI	GCAATG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	121, 481
BshFI	GGCC	4 cut(s)	128, 294, 314, 451
BsiHKAI	GWGCWC	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	146, 260
BsmAI	GTCTC	3 cut(s)	194, 331, 543
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	4 cut(s)	128, 294, 314, 451
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	241, 250, 355
BspANI	GGCC	4 cut(s)	128, 294, 314, 451
BspLI	GGNNCC	3 cut(s)	165, 315, 357
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	3 cut(s)	245, 350, 363
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	3 cut(s)	241, 250, 355
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	179, 525
BstBAI	YACGTR	1 cut(s)	132
BstC8I	GCNNGC	4 cut(s)	64, 285, 296, 418
BstF5I	GGATG	2 cut(s)	129, 451
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	3 cut(s)	244, 253, 358
BstMAI	GTCTC	3 cut(s)	194, 331, 543
BstMBI	GATC	3 cut(s)	241, 250, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 83
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	2 cut(s)	121, 481
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	4 cut(s)	128, 294, 314, 451
BtsCI	GGATG	2 cut(s)	129, 451
BtsI	GCAGTG	2 cut(s)	190, 493
BtsIMutI	CAGTG	2 cut(s)	190, 493
Cac8I	GCNNGC	4 cut(s)	64, 285, 296, 418
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	4 cut(s)	25, 292, 313, 449
Csp6I	GTAC	1 cut(s)	105
CviJI	RGCY	9 cut(s)	18, 66, 128, 158, 164, 294, 314, 374, 451
CviKI_1	RGCY	9 cut(s)	18, 66, 128, 158, 164, 294, 314, 374, 451
CviQI	GTAC	1 cut(s)	105
DpnI	GATC	3 cut(s)	243, 252, 357
DpnII	GATC	3 cut(s)	241, 250, 355
EaeI	YGGCCR	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	25
Eco72I	CACGTG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaiI	YATR	4 cut(s)	44, 57, 542, 583
FaqI	GGGAC	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	110, 495
FokI	GGATG	2 cut(s)	136, 458
Fsp4HI	GCNGC	2 cut(s)	110, 495
FspBI	CTAG	4 cut(s)	29, 438, 483, 595
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	2 cut(s)	110, 495
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	4 cut(s)	128, 294, 314, 451
HhaI	GCGC	1 cut(s)	494
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HinfI	GANTC	2 cut(s)	80, 551
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	1 cut(s)	591
Hpy188III	TCNNGA	2 cut(s)	254, 338
Hpy8I	GTNNAC	1 cut(s)	591
Hpy99I	CGWCG	1 cut(s)	457
HpyAV	CCTTC	2 cut(s)	309, 389
HpyCH4III	ACNGT	2 cut(s)	179, 525
HpyCH4IV	ACGT	2 cut(s)	131, 144
HpyCH4V	TGCA	4 cut(s)	183, 268, 309, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 83
HpySE526I	ACGT	2 cut(s)	131, 144
HspAI	GCGC	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	241, 250, 355
LmnI	GCTCC	2 cut(s)	169, 433
LpnPI	CCDG	9 cut(s)	47, 186, 267, 308, 330, 377, 381, 430, 488
Lsp1109I	GCAGC	2 cut(s)	121, 481
MaeI	CTAG	4 cut(s)	29, 438, 483, 595
MaeII	ACGT	2 cut(s)	131, 144
MaeIII	GTNAC	2 cut(s)	277, 519
MalI	GATC	3 cut(s)	243, 252, 357
MboI	GATC	3 cut(s)	241, 250, 355
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	2 cut(s)	127, 191
MnlI	CCTC	2 cut(s)	91, 143
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	2 cut(s)	237, 572
Msp20I	TGGCCA	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	68, 83
NdeII	GATC	3 cut(s)	241, 250, 355
NlaIV	GGNNCC	3 cut(s)	165, 315, 357
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	111, 496
PleI	GAGTC	1 cut(s)	545
PmaCI	CACGTG	1 cut(s)	132
PmlI	CACGTG	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	545
Ppu21I	YACGTR	1 cut(s)	132
PspCI	CACGTG	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	165, 315, 357
PspPI	GGNCC	4 cut(s)	25, 292, 313, 449
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	237, 572
SatI	GCNGC	2 cut(s)	110, 495
Sau3AI	GATC	3 cut(s)	241, 250, 355
Sau96I	GGNCC	4 cut(s)	25, 292, 313, 449
SchI	GAGTC	1 cut(s)	545
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	6 cut(s)	68, 134, 147, 154, 376, 596
SfcI	CTRYAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
SspMI	CTAG	4 cut(s)	29, 438, 483, 595
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	179, 525
TaiI	ACGT	2 cut(s)	134, 147
TaqII	GACCGA	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	237, 572
Tru9I	TTAA	2 cut(s)	237, 572
TscAI	CASTG	2 cut(s)	190, 493
TseI	GCWGC	2 cut(s)	109, 494
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	2 cut(s)	190, 493
VpaK11BI	GGWCC	1 cut(s)	25
XspI	CTAG	4 cut(s)	29, 438, 483, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.