Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Forward (+)

654113 .. 655483

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCGCGTTGGCGTTTGAGAACTACTACTGCAACTCGGCCGTGCGATCACAGAGGCCAGTTGTAGTAGTAGCTATGTTGGCCTTATTTTTTACAACAACAGTTAGAGTCGTGGACGGAGGAGCAGTCGACGAATGTGCCCAGCAGCTAGTAGGGATGGCGACGTGTCTGCCTTACGTTGGGGGTGAAGCCATGGCTCCAACACCCGACTGTTGCAGTGGTCTGAAACAAGTCCTCAACAACAACAAAAAGTGCCTCTGTGTCATCATTCAAGATCGCAATGACCCTGATTTGGGCCTACAGATCAACGTCACTCTTGCTTTGGGCCTGCCCTCCGTCTGCCACGCCGCCGCTAATGTCTCCAAGTGTCCAGAACTTCTACACTTGGATCCCAAATCACCAGAAGCTCAGGTGTTCTATCAATTACAGAACAACTCAACGCAAGCCGCCGCCAATAGTCCTACCCCAACTCCAACTCCAAGTCCGGCTGAAGGTCCCCTAAGTGGCATAAGTTCGAGCAGCTGGGCAGCTCGAGAGCGTGGTGGCATGGTTTTGGTCGGAGAGTGGAACTCTTGTTGGGGCTTCACCTTGATGATATGTGCGGTTTTGGTCATGTTCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

208

Amino Acids

21.95

Weight (kDa)

5.06

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	35 - 123	3.3e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	46 - 119	1.6e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	8
AciI	CCGC	6 cut(s)	6, 348, 351, 447, 450, 602
AclWI	GGATC	2 cut(s)	383, 396
AcoI	YGGCCR	2 cut(s)	3, 39
AcuI	CTGAAG	1 cut(s)	510
AfiI	CCNNNNNNNGG	5 cut(s)	179, 292, 293, 491, 503
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	165
AluBI	AGCT	5 cut(s)	74, 148, 407, 522, 530
AluI	AGCT	5 cut(s)	74, 148, 407, 522, 530
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	383, 396
Ama87I	CYCGRG	1 cut(s)	531
AoxI	GGCC	6 cut(s)	3, 39, 56, 81, 295, 325
ApeKI	GCWGC	3 cut(s)	145, 519, 527
AspS9I	GGNCC	3 cut(s)	295, 325, 494
AsuHPI	GGTGA	3 cut(s)	197, 390, 577
AvaI	CYCGRG	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	157, 531, 539
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	4 cut(s)	119, 151, 153, 185
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	2 cut(s)	149, 622
BfmI	CTRYAG	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	8 cut(s)	6, 146, 348, 351, 447, 450, 520, 528
BlsI	GCNGC	8 cut(s)	7, 147, 349, 352, 448, 451, 521, 529
Bme18I	GGWCC	1 cut(s)	494
BmeT110I	CYCGRG	1 cut(s)	531
BmgBI	CACGTC	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	295, 325, 494
BmiI	GGNNCC	3 cut(s)	198, 390, 496
BplI	GAGNNNNNCTC	2 cut(s)	554, 586
Bpu10I	CCTNAGC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	6 cut(s)	111, 141, 454, 460, 484, 490
Bsc4I	CCNNNNNNNGG	5 cut(s)	179, 292, 293, 491, 503
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	5 cut(s)	179, 292, 293, 491, 503
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	142
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	3 cut(s)	157, 531, 539
BseYI	CCCAGC	2 cut(s)	141, 522
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	6 cut(s)	5, 41, 58, 83, 297, 327
BsiEI	CGRYCG	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	5 cut(s)	179, 292, 293, 491, 503
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	6 cut(s)	5, 41, 58, 83, 297, 327
BsoBI	CYCGRG	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	4 cut(s)	47, 274, 303, 388
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	6 cut(s)	6, 348, 351, 447, 450, 602
BspANI	GGCC	6 cut(s)	5, 41, 58, 83, 297, 327
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	198, 390, 496
BspPI	GGATC	2 cut(s)	383, 396
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	4 cut(s)	47, 274, 303, 388
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	103, 212
BstC8I	GCNNGC	2 cut(s)	329, 444
BstDEI	CTNAG	2 cut(s)	408, 500
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	4 cut(s)	50, 277, 306, 391
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	4 cut(s)	47, 274, 303, 388
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 80
BstSFI	CTRYAG	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	142
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	157, 531, 539
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BstZI	CGGCCG	1 cut(s)	39
BsuRI	GGCC	6 cut(s)	5, 41, 58, 83, 297, 327
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	329, 444
Cfr13I	GGNCC	3 cut(s)	295, 325, 494
CviAII	CATG	3 cut(s)	193, 547, 613
DdeI	CTNAG	2 cut(s)	408, 500
DpnI	GATC	4 cut(s)	49, 276, 305, 390
DpnII	GATC	4 cut(s)	47, 274, 303, 388
EaeI	YGGCCR	2 cut(s)	3, 39
EagI	CGGCCG	1 cut(s)	39
EclXI	CGGCCG	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	494
Eco52I	CGGCCG	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	196, 550, 616
FaiI	YATR	6 cut(s)	77, 194, 509, 548, 598, 614
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	3 cut(s)	192, 546, 612
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	8 cut(s)	6, 146, 348, 351, 447, 450, 520, 528
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	8 cut(s)	6, 146, 348, 351, 447, 450, 520, 528
FspBI	CTAG	2 cut(s)	149, 622
GluI	GCNGC	8 cut(s)	6, 146, 348, 351, 447, 450, 520, 528
GsaI	CCCAGC	2 cut(s)	145, 526
HaeIII	GGCC	6 cut(s)	5, 41, 58, 83, 297, 327
HapII	CCGG	1 cut(s)	485
Hin1II	CATG	3 cut(s)	196, 550, 616
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	3 cut(s)	197, 390, 577
Hpy166II	GTNNAC	2 cut(s)	115, 130
Hpy188I	TCNGA	2 cut(s)	225, 560
Hpy188III	TCNNGA	3 cut(s)	272, 371, 533
Hpy8I	GTNNAC	2 cut(s)	115, 130
Hpy99I	CGWCG	2 cut(s)	134, 166
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	2 cut(s)	103, 212
HpyCH4IV	ACGT	3 cut(s)	164, 177, 309
HpyCH4V	TGCA	2 cut(s)	33, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 80
HpyF3I	CTNAG	2 cut(s)	408, 500
HpySE526I	ACGT	3 cut(s)	164, 177, 309
Hsp92II	CATG	3 cut(s)	196, 550, 616
Kzo9I	GATC	4 cut(s)	47, 274, 303, 388
LmnI	GCTCC	2 cut(s)	122, 202
LpnPI	CCDG	9 cut(s)	72, 155, 300, 341, 384, 395, 414, 498, 508
Lsp1109I	GCAGC	3 cut(s)	157, 531, 539
MaeI	CTAG	2 cut(s)	149, 622
MaeII	ACGT	3 cut(s)	164, 177, 309
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	4 cut(s)	49, 276, 305, 390
MboI	GATC	4 cut(s)	47, 274, 303, 388
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	3 cut(s)	224, 497, 538
MnlI	CCTC	5 cut(s)	48, 113, 245, 266, 343
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	522
MspI	CCGG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	11, 80
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	4 cut(s)	47, 274, 303, 388
NlaIII	CATG	3 cut(s)	196, 550, 616
NlaIV	GGNNCC	3 cut(s)	198, 390, 496
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	310
PaeR7I	CTCGAG	1 cut(s)	531
PkrI	GCNGC	8 cut(s)	7, 147, 349, 352, 448, 451, 521, 529
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	494
PspFI	CCCAGC	2 cut(s)	141, 522
PspN4I	GGNNCC	3 cut(s)	198, 390, 496
PspPI	GGNCC	3 cut(s)	295, 325, 494
PspPPI	RGGWCCY	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	128
SatI	GCNGC	8 cut(s)	6, 146, 348, 351, 447, 450, 520, 528
Sau3AI	GATC	4 cut(s)	47, 274, 303, 388
Sau96I	GGNCC	3 cut(s)	295, 325, 494
SchI	GAGTC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	299
Sfr274I	CTCGAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	494
SlaI	CTCGAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
Sse9I	AATT	1 cut(s)	422
SsiI	CCGC	6 cut(s)	6, 348, 351, 447, 450, 602
SspMI	CTAG	2 cut(s)	149, 622
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	103, 212
TaiI	ACGT	3 cut(s)	167, 180, 312
TaqI	TCGA	3 cut(s)	129, 515, 532
TasI	AATT	1 cut(s)	422
TauI	GCSGC	5 cut(s)	8, 350, 353, 449, 452
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	3 cut(s)	145, 519, 527
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	607
TspGWI	ACGGA	2 cut(s)	132, 325
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	494
XhoI	CTCGAG	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	149, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.