Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007670.1

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Reverse (-)

10026 .. 10878

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007670.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggccgcgttggggtttgagaactacaactcagccgtgagatcacagagttcagtagtagtagttgtactggtgttaatgttaacaacaacaacaacaacagttaaagtagtcgacggaggagcggtcgacgaatgcgcgcagcagctagtagggatggccacgtgtctgccttacgttgggggtgaagccatggctccaacaccggactgttgcagtggtctgaaacaagtcctgaacaaaaataaaacgtgcctctgcgttatcattcaagatcgcaacgaccctgatttgggcctaaagatcaatgtcactcttgctttgggcctgccttccgtctgccacgtcgccgccaatatctccaagtgtcccgaacttctacacttggatcccaaatcaccagaagctcaagtgttctatcagttacagaacaactctacgcaaaccgccgccaatggtcctgctccgggtccaagtagtacagcagcagctggaggtcccgtgagtggcataagttctaacagcggggcagctcgacagaatggcggcatgtttttggttggatactcctggggcttcaccttcatgttatatacagtttttgctcatgttcatctagatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

208

Amino Acids

21.59

Weight (kDa)

5.71

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AccI	GTMKAC	2 cut(s)	114, 129
AccII	CGCG	2 cut(s)	8, 140
AciI	CCGC	7 cut(s)	6, 125, 351, 447, 450, 525, 546
AclWI	GGATC	2 cut(s)	383, 396
AcoI	YGGCCR	2 cut(s)	3, 159
AcvI	CACGTG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	69, 481
AfiI	CCNNNNNNNGG	6 cut(s)	12, 179, 292, 293, 467, 506
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	569
AluBI	AGCT	4 cut(s)	148, 407, 491, 533
AluI	AGCT	4 cut(s)	148, 407, 491, 533
AlwI	GGATC	2 cut(s)	383, 396
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	4 cut(s)	3, 159, 295, 325
ApeKI	GCWGC	5 cut(s)	142, 145, 485, 488, 530
AspLEI	GCGC	2 cut(s)	140, 142
AspS9I	GGNCC	5 cut(s)	295, 325, 458, 470, 497
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	3 cut(s)	197, 390, 571
AvaII	GGWCC	3 cut(s)	458, 470, 497
BalI	TGGCCA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	388
BbrPI	CACGTG	1 cut(s)	165
BbvI	GCAGC	5 cut(s)	154, 157, 497, 500, 542
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	571
BciVI	GTATCC	1 cut(s)	557
BcnI	CCSGG	1 cut(s)	468
BfaI	CTAG	2 cut(s)	149, 617
BfuI	GTATCC	1 cut(s)	557
BisI	GCNGC	9 cut(s)	6, 143, 146, 351, 450, 486, 489, 531, 547
BlsI	GCNGC	9 cut(s)	7, 144, 147, 352, 451, 487, 490, 532, 548
Bme1390I	CCNGG	2 cut(s)	468, 571
Bme18I	GGWCC	3 cut(s)	458, 470, 497
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	5 cut(s)	295, 325, 458, 470, 497
BmiI	GGNNCC	4 cut(s)	198, 390, 471, 499
BmrFI	CCNGG	2 cut(s)	468, 571
BmsI	GCATC	1 cut(s)	610
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	468
BsaAI	YACGTR	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	192, 570
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 486, 516
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 179, 292, 293, 467, 506
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	2 cut(s)	192, 570
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	6 cut(s)	12, 179, 292, 293, 467, 506
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	75
BsePI	GCGCGC	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	5 cut(s)	154, 157, 497, 500, 542
Bsh1236I	CGCG	2 cut(s)	8, 140
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	4 cut(s)	5, 161, 297, 327
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	206, 467
BslFI	GGGAC	2 cut(s)	354, 483
BslI	CCNNNNNNNGG	6 cut(s)	12, 179, 292, 293, 467, 506
BsmFI	GGGAC	2 cut(s)	354, 483
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	4 cut(s)	5, 161, 297, 327
Bsp143I	GATC	4 cut(s)	41, 274, 303, 388
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	7 cut(s)	6, 125, 351, 447, 450, 525, 546
BspANI	GGCC	4 cut(s)	5, 161, 297, 327
BspCNI	CTCAG	1 cut(s)	44
BspFNI	CGCG	2 cut(s)	8, 140
BspLI	GGNNCC	4 cut(s)	198, 390, 471, 499
BspPI	GGATC	2 cut(s)	383, 396
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	192, 570
BssHII	GCGCGC	1 cut(s)	138
BssMI	GATC	4 cut(s)	41, 274, 303, 388
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	3 cut(s)	103, 212, 598
BstBAI	YACGTR	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	140, 329
BstDEI	CTNAG	1 cut(s)	31
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	2 cut(s)	8, 140
BstHHI	GCGC	2 cut(s)	140, 142
BstKTI	GATC	4 cut(s)	44, 277, 306, 391
BstMBI	GATC	4 cut(s)	41, 274, 303, 388
BstMCI	CGRYCG	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	571
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	2 cut(s)	466, 569
BstUI	CGCG	2 cut(s)	8, 140
BstV1I	GCAGC	5 cut(s)	154, 157, 497, 500, 542
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	557
BsuRI	GGCC	4 cut(s)	5, 161, 297, 327
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	140, 329
CaiI	CAGNNNCTG	1 cut(s)	491
CfoI	GCGC	2 cut(s)	140, 142
Cfr13I	GGNCC	5 cut(s)	295, 325, 458, 470, 497
Csp6I	GTAC	2 cut(s)	68, 480
CviAII	CATG	4 cut(s)	193, 550, 586, 608
CviQI	GTAC	2 cut(s)	68, 480
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	4 cut(s)	43, 276, 305, 390
DpnII	GATC	4 cut(s)	41, 274, 303, 388
EaeI	YGGCCR	2 cut(s)	3, 159
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	3 cut(s)	458, 470, 497
Eco72I	CACGTG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	569
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	4 cut(s)	196, 553, 589, 611
FaiI	YATR	7 cut(s)	194, 512, 551, 587, 592, 594, 609
FaqI	GGGAC	2 cut(s)	354, 483
FatI	CATG	4 cut(s)	192, 549, 585, 607
FauI	CCCGC	1 cut(s)	518
FblI	GTMKAC	2 cut(s)	114, 129
Fnu4HI	GCNGC	9 cut(s)	6, 143, 146, 351, 450, 486, 489, 531, 547
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	9 cut(s)	6, 143, 146, 351, 450, 486, 489, 531, 547
FspBI	CTAG	2 cut(s)	149, 617
GlaI	GCGC	2 cut(s)	139, 141
GluI	GCNGC	9 cut(s)	6, 143, 146, 351, 450, 486, 489, 531, 547
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	4 cut(s)	5, 161, 297, 327
HapII	CCGG	2 cut(s)	206, 467
HhaI	GCGC	2 cut(s)	140, 142
Hin1II	CATG	4 cut(s)	196, 553, 589, 611
Hin6I	GCGC	2 cut(s)	138, 140
HinP1I	GCGC	2 cut(s)	138, 140
HincII	GTYRAC	3 cut(s)	84, 115, 130
HindII	GTYRAC	3 cut(s)	84, 115, 130
HpaI	GTTAAC	1 cut(s)	84
HpaII	CCGG	2 cut(s)	206, 467
HphI	GGTGA	3 cut(s)	197, 390, 571
Hpy166II	GTNNAC	3 cut(s)	84, 115, 130
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	4 cut(s)	235, 272, 371, 617
Hpy8I	GTNNAC	3 cut(s)	84, 115, 130
Hpy99I	CGWCG	3 cut(s)	119, 134, 350
HpyAV	CCTTC	2 cut(s)	342, 592
HpyCH4III	ACNGT	3 cut(s)	103, 212, 598
HpyCH4IV	ACGT	4 cut(s)	164, 177, 251, 345
HpyCH4V	TGCA	1 cut(s)	216
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	4 cut(s)	164, 177, 251, 345
Hsp92II	CATG	4 cut(s)	196, 553, 589, 611
HspAI	GCGC	2 cut(s)	138, 140
KspAI	GTTAAC	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	41, 274, 303, 388
LmnI	GCTCC	3 cut(s)	122, 202, 469
Lsp1109I	GCAGC	5 cut(s)	154, 157, 497, 500, 542
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	2 cut(s)	149, 617
MaeII	ACGT	4 cut(s)	164, 177, 251, 345
MaeIII	GTNAC	2 cut(s)	310, 423
MalI	GATC	4 cut(s)	43, 276, 305, 390
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	4 cut(s)	41, 274, 303, 388
MflI	RGATCY	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	224, 541
MnlI	CCTC	3 cut(s)	113, 266, 488
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	3 cut(s)	77, 83, 105
MslI	CAYNNNNRTG	2 cut(s)	584, 618
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	491, 525
MspI	CCGG	2 cut(s)	206, 467
MspR9I	CCNGG	2 cut(s)	468, 571
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	571
MvnI	CGCG	2 cut(s)	8, 140
NciI	CCSGG	1 cut(s)	468
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	4 cut(s)	41, 274, 303, 388
NlaIII	CATG	4 cut(s)	196, 553, 589, 611
NlaIV	GGNNCC	4 cut(s)	198, 390, 471, 499
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	553
PauI	GCGCGC	1 cut(s)	138
PctI	GAATGC	1 cut(s)	140
PkrI	GCNGC	9 cut(s)	7, 144, 147, 352, 451, 487, 490, 532, 548
PmaCI	CACGTG	1 cut(s)	165
PmlI	CACGTG	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	165
PpuMI	RGGWCCY	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	569
PspCI	CACGTG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	4 cut(s)	198, 390, 471, 499
PspPI	GGNCC	5 cut(s)	295, 325, 458, 470, 497
PspPPI	RGGWCCY	1 cut(s)	497
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	388
PteI	GCGCGC	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	2 cut(s)	69, 481
RsaNI	GTAC	2 cut(s)	68, 480
RseI	CAYNNNNRTG	2 cut(s)	584, 618
SalI	GTCGAC	2 cut(s)	113, 128
SaqAI	TTAA	3 cut(s)	77, 83, 105
SatI	GCNGC	9 cut(s)	6, 143, 146, 351, 450, 486, 489, 531, 547
Sau3AI	GATC	4 cut(s)	41, 274, 303, 388
Sau96I	GGNCC	5 cut(s)	295, 325, 458, 470, 497
ScrFI	CCNGG	2 cut(s)	468, 571
SfaNI	GCATC	1 cut(s)	610
SinI	GGWCC	3 cut(s)	458, 470, 497
SmiMI	CAYNNNNRTG	2 cut(s)	584, 618
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
SsiI	CCGC	7 cut(s)	6, 125, 351, 447, 450, 525, 546
SspMI	CTAG	2 cut(s)	149, 617
StyD4I	CCNGG	2 cut(s)	466, 569
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	103, 212, 598
TaiI	ACGT	4 cut(s)	167, 180, 254, 348
TaqI	TCGA	3 cut(s)	114, 129, 535
TatI	WGTACW	2 cut(s)	67, 479
TauI	GCSGC	4 cut(s)	8, 353, 452, 549
Tru1I	TTAA	3 cut(s)	77, 83, 105
Tru9I	TTAA	3 cut(s)	77, 83, 105
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	5 cut(s)	142, 145, 485, 488, 530
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	574, 602
TspGWI	ACGGA	2 cut(s)	132, 325
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	3 cut(s)	458, 470, 497
XbaI	TCTAGA	1 cut(s)	616
XceI	RCATGY	1 cut(s)	553
XmiI	GTMKAC	2 cut(s)	114, 129
XspI	CTAG	2 cut(s)	149, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.