Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010389

Physical Location & Seq

Genomic Coordinates Forward (+)

68065730 .. 68068220

Gene Structure 2491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030818

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCCGCGTTGGGGTTTGAGAACTACAACTCAGCCGTGAGATCAGAAAGGTCAGTAGTAGTAGTTGTACTGGTGTTAATGTTAACAACAGCAACAACAACAGTTAAAGTCGTCGACGGAGGAGCGGTCGACGAATGTGCGCAGCAGCTAGCAGGGATGGCCACGTGTCTGCCTTACGTTGGGGGTGAAGCCGCGGCTCCAACACCGGACTGTTGCAGTGGTCTGAAAGAAGTCCTGAACAAAAATAAAACGTGCCTCTGCGTTGTCATTCAAGATCGCAACGACCCTGATTTGGGCCTGCACATCAATGTCACTCTTGCTTTGGGCCTGCCTTCCGTCTGCCACGCTGCCGCCAATATCTCCAAGTGTCCCGAACTTCTACACTTGGATCCTAAATCACCAGAAGCTCAAGTGTTCTATCAGTTACAGAACAACTCTACGCAAACCGCCGCCAGTAGTCCTGCTTCAACTCCAGGTACAGCAGCAGCTGGAGGTCCCCTGAGTGGCATAAGTTCAAACAGCGGGGCAGCTCGACAGAATGGCGGCTTGGTTTTGAATATCTATAAGGACAACGACCTATATGCTCCCTCTTCCTACTCTCTTCTTCGGCGAATCAACAACGGTGGTTTCAGGTTGTCTTTACTTTTAAACTCCCATAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

222

Amino Acids

22.93

Weight (kDa)

6.05

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	33 - 123	6.4e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	46 - 118	2.1e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44290 AT2G44300
fragaria_vesca	FvH4_7g00060 FvH4_7g00060
malus_domestica	MD02G1320100.v1.1 MD07G1000800.v1.1
prunus_persica	Prupe.2G001800_v2.0.a1 Prupe.2G001800_v2.0.a1
pyrus_communis	pycom07g00130
rosa_chinensis	RchiOBHm_Chr1g0313181
rosa_laevigata	RLG00000030818
rosa_multiflora	Rmu_co7999548.1_g000001 Rmu_sc0007670.1_g000006
rosa_roxburghii	Rroxscaffold_4G00332420
rosa_rugosa	RorugPtG0001100.1 RorugPtG0001200.1
rosa_samantha	Rh1AG001300 Rh1CG003400 Rh1CG006000 Rh1DG001200
rosa_wichuraiana	Rw1G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	141
AccBSI	CCGCTC	1 cut(s)	125
AccI	GTMKAC	2 cut(s)	114, 129
AccII	CGCG	2 cut(s)	8, 194
AciI	CCGC	9 cut(s)	6, 125, 192, 194, 351, 447, 450, 522, 543
AclWI	GGATC	2 cut(s)	383, 396
AcoI	YGGCCR	2 cut(s)	3, 159
AcvI	CACGTG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	69, 478
AfiI	CCNNNNNNNGG	5 cut(s)	12, 179, 292, 293, 503
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	4 cut(s)	272, 468, 516, 556
AjnI	CCWGG	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AluBI	AGCT	4 cut(s)	148, 407, 488, 530
AluI	AGCT	4 cut(s)	148, 407, 488, 530
AlwI	GGATC	2 cut(s)	383, 396
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	4 cut(s)	3, 159, 295, 325
ApeKI	GCWGC	6 cut(s)	142, 145, 347, 482, 485, 527
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	3 cut(s)	295, 325, 494
AsuHPI	GGTGA	2 cut(s)	197, 390
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	388
BarI	GAAGNNNNNNTAC	2 cut(s)	448, 480
BbrPI	CACGTG	1 cut(s)	165
BbvI	GCAGC	6 cut(s)	154, 157, 334, 494, 497, 539
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	20
BcgI	CGANNNNNNTGC	4 cut(s)	119, 153, 563, 597
BciT130I	CCWGG	1 cut(s)	474
BfaI	CTAG	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	3 cut(s)	295, 325, 494
BmiI	GGNNCC	3 cut(s)	198, 390, 496
BmrFI	CCNGG	1 cut(s)	474
BmtI	GCTAGC	1 cut(s)	152
BpmI	CTGGAG	2 cut(s)	456, 510
BpuEI	CTTGAG	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 179, 292, 293, 503
Bse1I	ACTGG	2 cut(s)	75, 453
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	5 cut(s)	12, 179, 292, 293, 503
BseMII	CTCAG	2 cut(s)	45, 491
BseNI	ACTGG	2 cut(s)	75, 453
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	6 cut(s)	154, 157, 334, 494, 497, 539
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	2 cut(s)	8, 194
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	4 cut(s)	5, 161, 297, 327
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	2 cut(s)	354, 480
BslI	CCNNNNNNNGG	5 cut(s)	12, 179, 292, 293, 503
BsmFI	GGGAC	2 cut(s)	354, 480
BsnI	GGCC	4 cut(s)	5, 161, 297, 327
Bsp143I	GATC	3 cut(s)	41, 274, 388
BspACI	CCGC	9 cut(s)	6, 125, 192, 194, 351, 447, 450, 522, 543
BspANI	GGCC	4 cut(s)	5, 161, 297, 327
BspCNI	CTCAG	2 cut(s)	44, 492
BspFNI	CGCG	2 cut(s)	8, 194
BspLI	GGNNCC	3 cut(s)	198, 390, 496
BspOI	GCTAGC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	383, 396
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	75, 453
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	41, 274, 388
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	3 cut(s)	103, 212, 623
Bst6I	CTCTTC	2 cut(s)	595, 606
BstBAI	YACGTR	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	150, 299, 329
BstDEI	CTNAG	2 cut(s)	31, 500
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	2 cut(s)	8, 194
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	3 cut(s)	44, 277, 391
BstMBI	GATC	3 cut(s)	41, 274, 388
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstUI	CGCG	2 cut(s)	8, 194
BstV1I	GCAGC	6 cut(s)	154, 157, 334, 494, 497, 539
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	4 cut(s)	5, 161, 297, 327
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	3 cut(s)	150, 299, 329
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	3 cut(s)	295, 325, 494
Cfr42I	CCGCGG	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	68, 477
CspCI	CAANNNNNGTGG	2 cut(s)	604, 639
CviQI	GTAC	2 cut(s)	68, 477
DdeI	CTNAG	2 cut(s)	31, 500
DpnI	GATC	3 cut(s)	43, 276, 390
DpnII	GATC	3 cut(s)	41, 274, 388
DraI	TTTAAA	1 cut(s)	648
EaeI	YGGCCR	2 cut(s)	3, 159
Eam1104I	CTCTTC	2 cut(s)	595, 606
EarI	CTCTTC	2 cut(s)	595, 606
Eco47I	GGWCC	1 cut(s)	494
Eco72I	CACGTG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	664
FaiI	YATR	6 cut(s)	509, 564, 580, 582, 657, 664
FaqI	GGGAC	2 cut(s)	354, 480
FauI	CCCGC	1 cut(s)	515
FblI	GTMKAC	2 cut(s)	114, 129
FokI	GGATG	1 cut(s)	169
FspBI	CTAG	1 cut(s)	149
FspI	TGCGCA	1 cut(s)	141
GlaI	GCGC	1 cut(s)	141
GsuI	CTGGAG	2 cut(s)	456, 510
HaeIII	GGCC	4 cut(s)	5, 161, 297, 327
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	3 cut(s)	84, 115, 130
HindII	GTYRAC	3 cut(s)	84, 115, 130
HinfI	GANTC	1 cut(s)	612
HpaI	GTTAAC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	2 cut(s)	197, 390
Hpy166II	GTNNAC	3 cut(s)	84, 115, 130
Hpy188I	TCNGA	2 cut(s)	46, 225
Hpy188III	TCNNGA	3 cut(s)	235, 272, 371
Hpy8I	GTNNAC	3 cut(s)	84, 115, 130
Hpy99I	CGWCG	3 cut(s)	116, 119, 134
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	3 cut(s)	103, 212, 623
HpyCH4IV	ACGT	3 cut(s)	164, 177, 251
HpyCH4V	TGCA	3 cut(s)	216, 301, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	31, 500
HpySE526I	ACGT	3 cut(s)	164, 177, 251
HspAI	GCGC	1 cut(s)	140
KspAI	GTTAAC	1 cut(s)	84
KspI	CCGCGG	1 cut(s)	195
Kzo9I	GATC	3 cut(s)	41, 274, 388
LmnI	GCTCC	3 cut(s)	122, 202, 589
Lsp1109I	GCAGC	6 cut(s)	154, 157, 334, 494, 497, 539
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	3 cut(s)	164, 177, 251
MaeIII	GTNAC	2 cut(s)	310, 423
MalI	GATC	3 cut(s)	43, 276, 390
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	3 cut(s)	41, 274, 388
MboII	GAAGA	3 cut(s)	582, 593, 596
MflI	RGATCY	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	4 cut(s)	113, 266, 485, 598
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	4 cut(s)	77, 83, 105, 647
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	3 cut(s)	194, 488, 522
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	2 cut(s)	8, 194
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	3 cut(s)	41, 274, 388
NheI	GCTAGC	1 cut(s)	148
NlaIV	GGNNCC	3 cut(s)	198, 390, 496
NmuCI	GTSAC	1 cut(s)	310
NsbI	TGCGCA	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	612
PmaCI	CACGTG	1 cut(s)	165
PmlI	CACGTG	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	165
PpuMI	RGGWCCY	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	472
PspCI	CACGTG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	3 cut(s)	198, 390, 496
PspPI	GGNCC	3 cut(s)	295, 325, 494
PspPPI	RGGWCCY	1 cut(s)	494
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	69, 478
RsaNI	GTAC	2 cut(s)	68, 477
RseI	CAYNNNNRTG	1 cut(s)	306
SacII	CCGCGG	1 cut(s)	195
SalI	GTCGAC	2 cut(s)	113, 128
SaqAI	TTAA	4 cut(s)	77, 83, 105, 647
Sau3AI	GATC	3 cut(s)	41, 274, 388
Sau96I	GGNCC	3 cut(s)	295, 325, 494
ScrFI	CCNGG	1 cut(s)	474
Sfr303I	CCGCGG	1 cut(s)	195
SgrBI	CCGCGG	1 cut(s)	195
SgrDI	CGTCGACG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
SsiI	CCGC	9 cut(s)	6, 125, 192, 194, 351, 447, 450, 522, 543
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	472
TaaI	ACNGT	3 cut(s)	103, 212, 623
TaiI	ACGT	3 cut(s)	167, 180, 254
TaqI	TCGA	3 cut(s)	114, 129, 532
TatI	WGTACW	1 cut(s)	67
TauI	GCSGC	6 cut(s)	8, 194, 197, 353, 452, 546
TfiI	GAWTC	1 cut(s)	612
Tru1I	TTAA	4 cut(s)	77, 83, 105, 647
Tru9I	TTAA	4 cut(s)	77, 83, 105, 647
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	6 cut(s)	142, 145, 347, 482, 485, 527
Tsp45I	GTSAC	1 cut(s)	310
TspGWI	ACGGA	2 cut(s)	132, 325
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	494
XmiI	GTMKAC	2 cut(s)	114, 129
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.