AT2G44600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014413
Physical Location & Seq
Forward (+)
18408579 .. 18410170
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44600.1

Sequence Viewer

Length: 942 bp
ATGAGGTGTAAGAGACACACAGTAGATTTCAGTAGCAGTATCGGCGTTTGTGCTTCTTGTCTCCGTGAACGACTCTTTACTCTCGCCGTTTCAACCGCCGCGTCTGAAAACGACGATAACGATCATCGTCATTCTCGTATTTCTCCACCTCCTCTGCTTTTTCCTCGTTCTGTTTCTCCTTACGTTGCTCCTAGAAAATCCGACGCCGGAACCGGAACCGGAGCTGGAGGAAGAGACTCCGTAGCTTCTTCTAATAACCGATTCTTCGCAACGCCGCAAGTGGTTGTTCAATCATCGTCATCGGAAAAAGTCTTCGAATCAGACAGATCGTTTAAGAAGAAAAAAAGCGGTTTATCTAGATTCTCTAGCTTCTTCAGAACGAGATCTGACGATTACGATTCGCGTCGCGATTCATGCGACGCCTCCACGGTTTTTTCTCAACCGTCGTCGGCGACGACTTCACGGTCATGGTTTTCGAAGGTTATATCAGTTCGATCGAAGAAACAATCAACCACCAATACTTGCTACATCGAAGATTTGATCGCTTCCGAATCCGATCATCATCATCATAATCAAAATCGACCTAGACAGAGATATTGTAGAGGAATGTCGCCGGCGGGAGATTCAACGACGAACGATGAATCAGTTGAGGAATCTCCAGGGAGATTAAGAAGAACGCCGGTGATGGGAACTCCGGGAAGGAAAAAGACGGCGACGATTGGGATTGGTAGAAGTGTATCAGGGATGGCTTTTTGCTTAAGTCCATTAGTGAGAGCTAAACCTAACTGTTCTTCTAACTGGAAAGCGAAATTTCCGCCGGATTTTGGATATTCCGGTGAATTGAAATCTCCGGCGAAGCCTCACCTATCAACGGCGGCGTCTTTTTGCGGTAACCGGTCTAAGAAGCTTGTGGATTTAGGTAGAGTTGATCACCGCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

313

Amino Acids

34.43

Weight (kDa)

10.03

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44600 AT3G60200
fragaria_vesca FvH4_7g08720
malus_domestica MD07G1088100.v1.1
prunus_persica Prupe.2G114900_v2.0.a1
pyrus_communis pycom02g19430 pycom07g07070
rosa_laevigata RLG00000028945 RLG00000030787
rosa_multiflora Rmu_ssc0000434.1_g000045
rosa_roxburghii Rroxscaffold_4G00310220
rosa_rugosa Rorug01G0169900
rosa_samantha Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana Rw1G015380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 463
AccII CGCG 3 cut(s) 101, 403, 408
AciI CCGC 9 cut(s) 96, 99, 275, 348, 617, 815, 875, 888, 934
AcsI RAATTY 1 cut(s) 809
AcuI CTGAAG 1 cut(s) 358
AcyI GRCGYC 3 cut(s) 204, 420, 878
AfiI CCNNNNNNNGG 3 cut(s) 686, 824, 871
AflII CTTAAG 1 cut(s) 757
AgeI ACCGGT 1 cut(s) 894
AgsI TTSAA 4 cut(s) 93, 290, 627, 844
AjnI CCWGG 1 cut(s) 658
AluBI AGCT 5 cut(s) 224, 245, 369, 776, 907
AluI AGCT 5 cut(s) 224, 245, 369, 776, 907
Alw26I GTCTC 3 cut(s) 7, 65, 228
ApoI RAATTY 1 cut(s) 809
AsiGI ACCGGT 1 cut(s) 894
AsuC2I CCSGG 1 cut(s) 696
AsuHPI GGTGA 4 cut(s) 694, 848, 854, 923
AsuII TTCGAA 2 cut(s) 315, 476
BbsI GAAGAC 1 cut(s) 304
BccI CCATC 2 cut(s) 679, 739
BceAI ACGGC 4 cut(s) 71, 726, 888, 921
BciT130I CCWGG 1 cut(s) 660
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 1 cut(s) 696
BcoDI GTCTC 3 cut(s) 7, 65, 228
BfaI CTAG 4 cut(s) 192, 357, 366, 585
BfrI CTTAAG 1 cut(s) 757
BglII AGATCT 1 cut(s) 383
BisI GCNGC 3 cut(s) 99, 275, 876
BlsI GCNGC 3 cut(s) 100, 276, 877
Bme1390I CCNGG 2 cut(s) 660, 696
BmiI GGNNCC 2 cut(s) 211, 217
BmrFI CCNGG 2 cut(s) 660, 696
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 2 cut(s) 246, 642
Bpu14I TTCGAA 2 cut(s) 315, 476
BpuMI CCSGG 1 cut(s) 696
BsaBI GATNNNNATC 2 cut(s) 120, 561
BsaHI GRCGYC 3 cut(s) 204, 420, 878
BsaJI CCNNGG 2 cut(s) 426, 659
BsaWI WCCGGW 4 cut(s) 212, 218, 833, 894
Bsc4I CCNNNNNNNGG 3 cut(s) 686, 824, 871
Bse118I RCCGGY 3 cut(s) 613, 679, 894
Bse1I ACTGG 1 cut(s) 803
Bse8I GATNNNNATC 2 cut(s) 120, 561
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 2 cut(s) 426, 659
BseGI GGATG 1 cut(s) 750
BseJI GATNNNNATC 2 cut(s) 120, 561
BseLI CCNNNNNNNGG 3 cut(s) 686, 824, 871
BseNI ACTGG 1 cut(s) 803
BseRI GAGGAG 1 cut(s) 141
Bsh1236I CGCG 3 cut(s) 101, 403, 408
Bsh1285I CGRYCG 1 cut(s) 497
BshTI ACCGGT 1 cut(s) 894
BsiEI CGRYCG 1 cut(s) 497
BslI CCNNNNNNNGG 3 cut(s) 686, 824, 871
BsmAI GTCTC 3 cut(s) 7, 65, 228
Bsp119I TTCGAA 2 cut(s) 315, 476
Bsp143I GATC 7 cut(s) 121, 326, 383, 494, 540, 556, 928
Bsp68I TCGCGA 1 cut(s) 408
BspACI CCGC 9 cut(s) 96, 99, 275, 348, 617, 815, 875, 888, 934
BspFNI CGCG 3 cut(s) 101, 403, 408
BspLI GGNNCC 2 cut(s) 211, 217
BspT104I TTCGAA 2 cut(s) 315, 476
BspTI CTTAAG 1 cut(s) 757
BsrFI RCCGGY 3 cut(s) 613, 679, 894
BsrI ACTGG 1 cut(s) 803
BssAI RCCGGY 3 cut(s) 613, 679, 894
BssECI CCNNGG 2 cut(s) 426, 659
BssMI GATC 7 cut(s) 121, 326, 383, 494, 540, 556, 928
BssNI GRCGYC 3 cut(s) 204, 420, 878
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 5 cut(s) 22, 430, 444, 465, 788
Bst6I CTCTTC 1 cut(s) 226
BstACI GRCGYC 3 cut(s) 204, 420, 878
BstAFI CTTAAG 1 cut(s) 757
BstBI TTCGAA 2 cut(s) 315, 476
BstC8I GCNNGC 1 cut(s) 615
BstDEI CTNAG 1 cut(s) 900
BstDSI CCRYGG 1 cut(s) 426
BstEII GGTNACC 1 cut(s) 890
BstF5I GGATG 1 cut(s) 750
BstFNI CGCG 3 cut(s) 101, 403, 408
BstKTI GATC 7 cut(s) 124, 329, 386, 497, 543, 559, 931
BstMAI GTCTC 3 cut(s) 7, 65, 228
BstMBI GATC 7 cut(s) 121, 326, 383, 494, 540, 556, 928
BstMCI CGRYCG 1 cut(s) 497
BstMWI GCNNNNNNNGC 2 cut(s) 42, 414
BstNI CCWGG 1 cut(s) 660
BstPI GGTNACC 1 cut(s) 890
BstSCI CCNGG 2 cut(s) 658, 694
BstUI CGCG 3 cut(s) 101, 403, 408
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 1 cut(s) 750
BtuMI TCGCGA 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 615
Cfr10I RCCGGY 3 cut(s) 613, 679, 894
CseI GACGC 5 cut(s) 90, 212, 392, 428, 867
CspAI ACCGGT 1 cut(s) 894
CviAII CATG 2 cut(s) 414, 468
CviJI RGCY 7 cut(s) 224, 245, 369, 749, 776, 859, 907
CviKI_1 RGCY 7 cut(s) 224, 245, 369, 749, 776, 859, 907
DdeI CTNAG 1 cut(s) 900
DpnI GATC 7 cut(s) 123, 328, 385, 496, 542, 558, 930
DpnII GATC 7 cut(s) 121, 326, 383, 494, 540, 556, 928
DrdI GACNNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 804
Eco57I CTGAAG 1 cut(s) 358
Eco91I GGTNACC 1 cut(s) 890
EcoO65I GGTNACC 1 cut(s) 890
EcoRII CCWGG 1 cut(s) 658
FaeI CATG 2 cut(s) 417, 471
FaiI YATR 4 cut(s) 415, 469, 485, 570
FatI CATG 2 cut(s) 413, 467
FauI CCCGC 1 cut(s) 610
FbaI TGATCA 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 99, 275, 876
FokI GGATG 1 cut(s) 757
Fsp4HI GCNGC 3 cut(s) 99, 275, 876
FspBI CTAG 4 cut(s) 192, 357, 366, 585
GluI GCNGC 3 cut(s) 99, 275, 876
GsuI CTGGAG 2 cut(s) 246, 642
HgaI GACGC 5 cut(s) 90, 212, 392, 428, 867
Hin1I GRCGYC 3 cut(s) 204, 420, 878
Hin1II CATG 2 cut(s) 417, 471
HindIII AAGCTT 1 cut(s) 905
HphI GGTGA 4 cut(s) 694, 848, 854, 923
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 8 cut(s) 106, 202, 304, 322, 377, 388, 550, 556
Hpy188III TCNNGA 2 cut(s) 357, 407
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 9 cut(s) 116, 206, 408, 422, 448, 451, 457, 634, 718
HpyAV CCTTC 2 cut(s) 472, 693
HpyCH4III ACNGT 5 cut(s) 22, 430, 444, 465, 788
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 414
HpyF3I CTNAG 1 cut(s) 900
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 3 cut(s) 204, 420, 878
Hsp92II CATG 2 cut(s) 417, 471
KroI GCCGGC 1 cut(s) 613
KroNI GCCGGC 1 cut(s) 615
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 7 cut(s) 121, 326, 383, 494, 540, 556, 928
LmnI GCTCC 2 cut(s) 193, 221
MaeI CTAG 4 cut(s) 192, 357, 366, 585
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 890
MalI GATC 7 cut(s) 123, 328, 385, 496, 542, 558, 930
MboI GATC 7 cut(s) 121, 326, 383, 494, 540, 556, 928
MflI RGATCY 1 cut(s) 383
MluCI AATT 2 cut(s) 809, 839
MlyI GAGTC 2 cut(s) 66, 230
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 8 cut(s) 159, 162, 174, 221, 433, 596, 643, 870
MreI CGCCGGCG 1 cut(s) 613
MroNI GCCGGC 1 cut(s) 613
MseI TTAA 3 cut(s) 333, 668, 758
MslI CAYNNNNRTG 1 cut(s) 466
MspCI CTTAAG 1 cut(s) 757
MspR9I CCNGG 2 cut(s) 660, 696
MvaI CCWGG 1 cut(s) 660
MvnI CGCG 3 cut(s) 101, 403, 408
MwoI GCNNNNNNNGC 2 cut(s) 42, 414
NaeI GCCGGC 1 cut(s) 615
NciI CCSGG 1 cut(s) 696
NdeII GATC 7 cut(s) 121, 326, 383, 494, 540, 556, 928
NgoMIV GCCGGC 1 cut(s) 613
NlaIII CATG 2 cut(s) 417, 471
NlaIV GGNNCC 2 cut(s) 211, 217
NruI TCGCGA 1 cut(s) 408
NspV TTCGAA 2 cut(s) 315, 476
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 133, 452
PdiI GCCGGC 1 cut(s) 615
PfeI GAWTC 9 cut(s) 261, 317, 360, 398, 410, 551, 623, 641, 653
PfoI TCCNGGA 1 cut(s) 694
PinAI ACCGGT 1 cut(s) 894
PkrI GCNGC 3 cut(s) 100, 276, 877
Ple19I CGATCG 1 cut(s) 497
PleI GAGTC 2 cut(s) 66, 230
PpsI GAGTC 2 cut(s) 66, 230
Psp6I CCWGG 1 cut(s) 658
PspEI GGTNACC 1 cut(s) 890
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 2 cut(s) 211, 217
PsuI RGATCY 1 cut(s) 383
PvuI CGATCG 1 cut(s) 497
RruI TCGCGA 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 466
SaqAI TTAA 3 cut(s) 333, 668, 758
SatI GCNGC 3 cut(s) 99, 275, 876
Sau3AI GATC 7 cut(s) 121, 326, 383, 494, 540, 556, 928
SchI GAGTC 2 cut(s) 66, 230
ScrFI CCNGG 2 cut(s) 660, 696
SfuI TTCGAA 2 cut(s) 315, 476
SgrAI CRCCGGYG 2 cut(s) 613, 679
SmiMI CAYNNNNRTG 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 757
SmoI CTYRAG 1 cut(s) 757
Sse9I AATT 2 cut(s) 809, 839
SsiI CCGC 9 cut(s) 96, 99, 275, 348, 617, 815, 875, 888, 934
SspMI CTAG 4 cut(s) 192, 357, 366, 585
StyD4I CCNGG 2 cut(s) 658, 694
TaaI ACNGT 5 cut(s) 22, 430, 444, 465, 788
TaiI ACGT 1 cut(s) 186
TaqI TCGA 6 cut(s) 315, 476, 493, 497, 531, 580
TasI AATT 2 cut(s) 809, 839
TauI GCSGC 3 cut(s) 101, 277, 878
TfiI GAWTC 9 cut(s) 261, 317, 360, 398, 410, 551, 623, 641, 653
Tru1I TTAA 3 cut(s) 333, 668, 758
Tru9I TTAA 3 cut(s) 333, 668, 758
TspDTI ATGAA 2 cut(s) 402, 654
TspGWI ACGGA 2 cut(s) 53, 229
Vha464I CTTAAG 1 cut(s) 757
XapI RAATTY 1 cut(s) 809
XbaI TCTAGA 1 cut(s) 356
XspI CTAG 4 cut(s) 192, 357, 366, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.