MD07G1088100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014413
Physical Location & Seq
Forward (+)
9210494 .. 9211396
903 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1088100.v1.1.491

Sequence Viewer

Length: 903 bp
ATGAGGTGCAAGAAGCACCTCTCCGACCTCACCAGCACCCTCGGCGTCTGCGCCTCCTGTCTCCGGGAGCGCCTCGCCGCCATCATCGAGGCCCAAACCCAGGCCCAGGCCCAGCTCTCGAGACTCCACTCCCGGACACCCGCCGCTCCGCTCGATGAACCCAACCGCAAGTCCGATGCCAACCCTCGGCCGCTTATTTTCCCCCACTCCGTCTCCCCTTACGTCTCTCGAAGAAAATCGGACGACTCAACGTGGCACCAGCACCGGATTCGATTCTACAGTACGCCTCAGGTGGGCCCCACATATGCCACCGCCACCTCCACCTCCACCTCCACCTCCACCATTGAAGGTTCGTGTAAGAGGAGCAAGACCCGGTTCTCGCTCCTATCGAGTCTTTTTCGATCCAGATCCGTCAAGTTCTGGTCGGGTCCTAGTGATTCGTCGGTTCCGGCCATTTCTTCGTCGTCGGCGTCGTCGCCCTCGTGGTTCTCTTCGATCTTCGCCAGAAAAACGCGGTATCGGTCGAAGCATCTCTACGTCAACGAGTCATCCGGTTGCCAGAGGCCTCGGGGATTGTCGCCGGACGTAACGCCCAATCCCTTCGAAGACTGCGATCGATCGCGGCCGGGAAGCGGTGACTCGTCGGCAACGACGCCGGAGTGGAAGAAGACGCCGGCGTTGGCTCCGCCGTCGACGCGGAGGGCACGTGCCGGGCAGGGAAAGAACAACATGTCGGGCCTTGCGTTTTGCCTTAGCCCGCTGGTTCGAGCCAGCCCGAACCGGCACTGGAACCAGAAGGGATTGCCGCCTGAGATAGCCGGCGAGATTCGTGTCGCGGCTTCGTTCTGCAAGAGCCGGTCTAGGAAGCTGGCGGATTTCGGTAGAGCAAATCCGAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

301

Amino Acids

32.98

Weight (kDa)

10.7

Isoelectric Point (pI)

64.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44600 AT3G60200
fragaria_vesca FvH4_7g08720
malus_domestica MD07G1088100.v1.1
prunus_persica Prupe.2G114900_v2.0.a1
pyrus_communis pycom02g19430 pycom07g07070
rosa_laevigata RLG00000028945 RLG00000030787
rosa_multiflora Rmu_ssc0000434.1_g000045
rosa_roxburghii Rroxscaffold_4G00310220
rosa_rugosa Rorug01G0169900
rosa_samantha Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana Rw1G015380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 255
AccBSI CCGCTC 2 cut(s) 146, 151
AccI GTMKAC 1 cut(s) 692
AccII CGCG 4 cut(s) 514, 622, 697, 836
AclWI GGATC 2 cut(s) 396, 402
AcoI YGGCCR 3 cut(s) 188, 450, 623
AcvI CACGTG 1 cut(s) 707
AcyI GRCGYC 4 cut(s) 45, 470, 653, 671
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 6 cut(s) 63, 100, 106, 186, 293, 632
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 2 cut(s) 99, 105
AluBI AGCT 2 cut(s) 115, 868
AluI AGCT 2 cut(s) 115, 868
Alw26I GTCTC 4 cut(s) 65, 115, 217, 229
AlwI GGATC 2 cut(s) 396, 402
Ama87I CYCGRG 2 cut(s) 118, 567
AoxI GGCC 9 cut(s) 90, 102, 108, 188, 295, 450, 563, 623, 736
ApaI GGGCCC 1 cut(s) 299
AspLEI GCGC 2 cut(s) 53, 72
AspS9I GGNCC 7 cut(s) 91, 103, 109, 295, 296, 428, 736
AsuC2I CCSGG 5 cut(s) 65, 133, 373, 627, 712
AsuHPI GGTGA 2 cut(s) 22, 647
AsuII TTCGAA 1 cut(s) 603
AvaI CYCGRG 2 cut(s) 118, 567
AvaII GGWCC 1 cut(s) 428
AxyI CCTNAGG 1 cut(s) 288
BaeGI GKGCMC 2 cut(s) 299, 706
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 299
BarI GAAGNNNNNNTAC 2 cut(s) 518, 550
BauI CACGAG 1 cut(s) 481
BbrPI CACGTG 1 cut(s) 707
BbsI GAAGAC 2 cut(s) 612, 674
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 673
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 2 cut(s) 101, 107
BcnI CCSGG 5 cut(s) 65, 133, 373, 627, 712
BcoDI GTCTC 4 cut(s) 65, 115, 217, 229
BfaI CTAG 2 cut(s) 432, 861
BfmI CTRYAG 1 cut(s) 277
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 6 cut(s) 78, 144, 191, 623, 806, 837
BlsI GCNGC 6 cut(s) 79, 145, 192, 624, 807, 838
Bme1390I CCNGG 7 cut(s) 65, 101, 107, 133, 373, 627, 712
Bme18I GGWCC 1 cut(s) 428
BmeT110I CYCGRG 2 cut(s) 118, 567
BmgT120I GGNCC 7 cut(s) 91, 103, 109, 295, 296, 428, 736
BmiI GGNNCC 7 cut(s) 257, 297, 298, 429, 447, 684, 791
BmrFI CCNGG 7 cut(s) 65, 101, 107, 133, 373, 627, 712
BmsI GCATC 2 cut(s) 166, 538
BpiI GAAGAC 2 cut(s) 612, 674
Bpu10I CCTNAGC 1 cut(s) 752
Bpu14I TTCGAA 1 cut(s) 603
BpuMI CCSGG 5 cut(s) 65, 133, 373, 627, 712
Bsa29I ATCGAT 1 cut(s) 616
BsaAI YACGTR 1 cut(s) 707
BsaBI GATNNNNATC 1 cut(s) 406
BsaHI GRCGYC 4 cut(s) 45, 470, 653, 671
BsaJI CCNNGG 5 cut(s) 40, 99, 105, 185, 566
BsaWI WCCGGW 2 cut(s) 264, 551
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 691, 721
Bsc4I CCNNNNNNNGG 6 cut(s) 63, 100, 106, 186, 293, 632
Bse118I RCCGGY 4 cut(s) 673, 780, 818, 855
Bse1I ACTGG 1 cut(s) 791
Bse21I CCTNAGG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 406
BseBI CCWGG 2 cut(s) 101, 107
BseCI ATCGAT 1 cut(s) 616
BseDI CCNNGG 5 cut(s) 40, 99, 105, 185, 566
BseGI GGATG 1 cut(s) 548
BseJI GATNNNNATC 1 cut(s) 406
BseLI CCNNNNNNNGG 6 cut(s) 63, 100, 106, 186, 293, 632
BseMII CTCAG 2 cut(s) 302, 801
BseNI ACTGG 1 cut(s) 791
BseRI GAGGAG 1 cut(s) 376
BseSI GKGCMC 2 cut(s) 299, 706
BseX3I CGGCCG 2 cut(s) 188, 623
BseYI CCCAGC 1 cut(s) 111
Bsh1236I CGCG 4 cut(s) 514, 622, 697, 836
Bsh1285I CGRYCG 5 cut(s) 191, 524, 616, 620, 626
BshFI GGCC 9 cut(s) 92, 104, 110, 190, 297, 452, 565, 625, 738
BshNI GGYRCC 1 cut(s) 255
BshVI ATCGAT 1 cut(s) 616
BsiEI CGRYCG 5 cut(s) 191, 524, 616, 620, 626
BsiHKCI CYCGRG 2 cut(s) 118, 567
BslI CCNNNNNNNGG 6 cut(s) 63, 100, 106, 186, 293, 632
BsmAI GTCTC 4 cut(s) 65, 115, 217, 229
BsmBI CGTCTC 2 cut(s) 217, 229
BsnI GGCC 9 cut(s) 92, 104, 110, 190, 297, 452, 565, 625, 738
BsoBI CYCGRG 2 cut(s) 118, 567
Bsp119I TTCGAA 1 cut(s) 603
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 299, 706
Bsp143I GATC 5 cut(s) 401, 407, 495, 613, 617
BspANI GGCC 9 cut(s) 92, 104, 110, 190, 297, 452, 565, 625, 738
BspCNI CTCAG 2 cut(s) 301, 802
BspDI ATCGAT 1 cut(s) 616
BspFNI CGCG 4 cut(s) 514, 622, 697, 836
BspLI GGNNCC 7 cut(s) 257, 297, 298, 429, 447, 684, 791
BspPI GGATC 2 cut(s) 396, 402
BspT104I TTCGAA 1 cut(s) 603
BspT107I GGYRCC 1 cut(s) 255
BsrBI CCGCTC 2 cut(s) 146, 151
BsrFI RCCGGY 4 cut(s) 673, 780, 818, 855
BsrI ACTGG 1 cut(s) 791
BssAI RCCGGY 4 cut(s) 673, 780, 818, 855
BssECI CCNNGG 5 cut(s) 40, 99, 105, 185, 566
BssMI GATC 5 cut(s) 401, 407, 495, 613, 617
BssNI GRCGYC 4 cut(s) 45, 470, 653, 671
BssSI CACGAG 1 cut(s) 481
Bst2BI CACGAG 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 101, 107
Bst4CI ACNGT 2 cut(s) 281, 899
Bst6I CTCTTC 1 cut(s) 496
BstACI GRCGYC 4 cut(s) 45, 470, 653, 671
BstBAI YACGTR 1 cut(s) 707
BstBI TTCGAA 1 cut(s) 603
BstC8I GCNNGC 5 cut(s) 675, 758, 772, 820, 870
BstDEI CTNAG 3 cut(s) 288, 752, 810
BstF5I GGATG 1 cut(s) 548
BstFNI CGCG 4 cut(s) 514, 622, 697, 836
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 53, 72
BstKTI GATC 5 cut(s) 404, 410, 498, 616, 620
BstMAI GTCTC 4 cut(s) 65, 115, 217, 229
BstMBI GATC 5 cut(s) 401, 407, 495, 613, 617
BstMCI CGRYCG 5 cut(s) 191, 524, 616, 620, 626
BstMWI GCNNNNNNNGC 2 cut(s) 42, 694
BstNI CCWGG 2 cut(s) 101, 107
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 7 cut(s) 63, 99, 105, 131, 371, 625, 710
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 2 cut(s) 299, 706
BstUI CGCG 4 cut(s) 514, 622, 697, 836
BstV2I GAAGAC 2 cut(s) 612, 674
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BstZI CGGCCG 2 cut(s) 188, 623
Bsu15I ATCGAT 1 cut(s) 616
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 9 cut(s) 92, 104, 110, 190, 297, 452, 565, 625, 738
BsuTUI ATCGAT 1 cut(s) 616
BtsCI GGATG 1 cut(s) 548
BtsIMutI CAGTG 1 cut(s) 784
Cac8I GCNNGC 5 cut(s) 675, 758, 772, 820, 870
CfoI GCGC 2 cut(s) 53, 72
Cfr10I RCCGGY 4 cut(s) 673, 780, 818, 855
Cfr13I GGNCC 7 cut(s) 91, 103, 109, 295, 296, 428, 736
ClaI ATCGAT 1 cut(s) 616
CseI GACGC 5 cut(s) 34, 459, 661, 679, 703
Csp6I GTAC 1 cut(s) 282
CviAII CATG 1 cut(s) 730
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 3 cut(s) 288, 752, 810
DpnI GATC 5 cut(s) 403, 409, 497, 615, 619
DpnII GATC 5 cut(s) 401, 407, 495, 613, 617
EaeI YGGCCR 3 cut(s) 188, 450, 623
EagI CGGCCG 2 cut(s) 188, 623
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
EciI GGCGGA 2 cut(s) 675, 887
EclXI CGGCCG 2 cut(s) 188, 623
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 428
Eco52I CGGCCG 2 cut(s) 188, 623
Eco72I CACGTG 1 cut(s) 707
Eco81I CCTNAGG 1 cut(s) 288
Eco88I CYCGRG 2 cut(s) 118, 567
EcoO109I RGGNCCY 2 cut(s) 296, 428
EcoRII CCWGG 2 cut(s) 99, 105
EcoT38I GRGCYC 1 cut(s) 299
Esp3I CGTCTC 2 cut(s) 217, 229
FaeI CATG 1 cut(s) 733
FaiI YATR 3 cut(s) 304, 306, 731
FatI CATG 1 cut(s) 729
FauI CCCGC 2 cut(s) 148, 765
FauNDI CATATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 692
Fnu4HI GCNGC 6 cut(s) 78, 144, 191, 623, 806, 837
FokI GGATG 1 cut(s) 535
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 6 cut(s) 78, 144, 191, 623, 806, 837
FspBI CTAG 2 cut(s) 432, 861
GlaI GCGC 2 cut(s) 52, 71
GluI GCNGC 6 cut(s) 78, 144, 191, 623, 806, 837
GsaI CCCAGC 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 9 cut(s) 92, 104, 110, 190, 297, 452, 565, 625, 738
HgaI GACGC 5 cut(s) 34, 459, 661, 679, 703
HhaI GCGC 2 cut(s) 53, 72
Hin1I GRCGYC 4 cut(s) 45, 470, 653, 671
Hin1II CATG 1 cut(s) 733
Hin6I GCGC 2 cut(s) 51, 70
HinP1I GCGC 2 cut(s) 51, 70
HincII GTYRAC 2 cut(s) 541, 693
HindII GTYRAC 2 cut(s) 541, 693
HinfI GANTC 9 cut(s) 123, 245, 268, 273, 391, 437, 545, 638, 826
HphI GGTGA 2 cut(s) 22, 647
Hpy166II GTNNAC 2 cut(s) 541, 693
Hpy188I TCNGA 4 cut(s) 25, 175, 241, 894
Hpy188III TCNNGA 4 cut(s) 118, 120, 228, 405
Hpy8I GTNNAC 2 cut(s) 541, 693
Hpy99I CGWCG 9 cut(s) 445, 466, 469, 475, 478, 646, 655, 694, 697
HpyAV CCTTC 3 cut(s) 341, 610, 790
HpyCH4III ACNGT 2 cut(s) 281, 899
HpyCH4IV ACGT 5 cut(s) 222, 251, 537, 585, 706
HpyCH4V TGCA 2 cut(s) 9, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 694
HpyF3I CTNAG 3 cut(s) 288, 752, 810
HpySE526I ACGT 5 cut(s) 222, 251, 537, 585, 706
Hsp92I GRCGYC 4 cut(s) 45, 470, 653, 671
Hsp92II CATG 1 cut(s) 733
HspAI GCGC 2 cut(s) 51, 70
KroI GCCGGC 2 cut(s) 673, 818
KroNI GCCGGC 2 cut(s) 675, 820
Kzo9I GATC 5 cut(s) 401, 407, 495, 613, 617
LmnI GCTCC 5 cut(s) 67, 151, 363, 387, 688
LweI GCATC 2 cut(s) 166, 538
MaeI CTAG 2 cut(s) 432, 861
MaeII ACGT 5 cut(s) 222, 251, 537, 585, 706
MaeIII GTNAC 2 cut(s) 586, 635
MalI GATC 5 cut(s) 403, 409, 497, 615, 619
MbiI CCGCTC 2 cut(s) 146, 151
MboI GATC 5 cut(s) 401, 407, 495, 613, 617
MboII GAAGA 7 cut(s) 243, 450, 483, 490, 617, 676, 679
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 2 cut(s) 299, 706
MlyI GAGTC 5 cut(s) 117, 239, 400, 554, 632
MmeI TCCRAC 1 cut(s) 48
MreI CGCCGGCG 1 cut(s) 673
MroNI GCCGGC 2 cut(s) 673, 818
MspA1I CMGCKG 1 cut(s) 760
MspR9I CCNGG 7 cut(s) 65, 101, 107, 133, 373, 627, 712
MvaI CCWGG 2 cut(s) 101, 107
MvnI CGCG 4 cut(s) 514, 622, 697, 836
MwoI GCNNNNNNNGC 2 cut(s) 42, 694
NaeI GCCGGC 2 cut(s) 675, 820
NciI CCSGG 5 cut(s) 65, 133, 373, 627, 712
NdeI CATATG 1 cut(s) 304
NdeII GATC 5 cut(s) 401, 407, 495, 613, 617
NgoMIV GCCGGC 2 cut(s) 673, 818
NlaIII CATG 1 cut(s) 733
NlaIV GGNNCC 7 cut(s) 257, 297, 298, 429, 447, 684, 791
NmeAIII GCCGAG 2 cut(s) 21, 166
NmuCI GTSAC 1 cut(s) 635
NspI RCATGY 1 cut(s) 733
NspV TTCGAA 1 cut(s) 603
PaeR7I CTCGAG 1 cut(s) 118
PceI AGGCCT 1 cut(s) 565
PciI ACATGT 1 cut(s) 729
PcsI WCGNNNNNNNCGW 7 cut(s) 386, 467, 470, 479, 609, 647, 740
PdiI GCCGGC 2 cut(s) 675, 820
PfeI GAWTC 4 cut(s) 268, 273, 437, 826
PfoI TCCNGGA 2 cut(s) 63, 131
PkrI GCNGC 6 cut(s) 79, 145, 192, 624, 807, 838
Ple19I CGATCG 2 cut(s) 616, 620
PleI GAGTC 5 cut(s) 117, 239, 399, 553, 632
PmaCI CACGTG 1 cut(s) 707
PmlI CACGTG 1 cut(s) 707
PpsI GAGTC 5 cut(s) 117, 239, 399, 553, 632
Ppu21I YACGTR 1 cut(s) 707
PpuMI RGGWCCY 1 cut(s) 428
PscI ACATGT 1 cut(s) 729
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 99, 105
PspCI CACGTG 1 cut(s) 707
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 2 cut(s) 99, 105
PspN4I GGNNCC 7 cut(s) 257, 297, 298, 429, 447, 684, 791
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 7 cut(s) 91, 103, 109, 295, 296, 428, 736
PspPPI RGGWCCY 1 cut(s) 428
PsuI RGATCY 1 cut(s) 407
PvuI CGATCG 2 cut(s) 616, 620
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SalI GTCGAC 1 cut(s) 691
SatI GCNGC 6 cut(s) 78, 144, 191, 623, 806, 837
Sau3AI GATC 5 cut(s) 401, 407, 495, 613, 617
Sau96I GGNCC 7 cut(s) 91, 103, 109, 295, 296, 428, 736
SchI GAGTC 5 cut(s) 117, 239, 400, 554, 632
ScrFI CCNGG 7 cut(s) 65, 101, 107, 133, 373, 627, 712
SduI GDGCHC 2 cut(s) 299, 706
SfaNI GCATC 2 cut(s) 166, 538
SfcI CTRYAG 1 cut(s) 277
Sfr274I CTCGAG 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 603
SgrAI CRCCGGYG 1 cut(s) 673
SgrDI CGTCGACG 1 cut(s) 691
SinI GGWCC 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SseBI AGGCCT 1 cut(s) 565
SspMI CTAG 2 cut(s) 432, 861
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 7 cut(s) 63, 99, 105, 131, 371, 625, 710
TaaI ACNGT 2 cut(s) 281, 899
TaiI ACGT 5 cut(s) 225, 254, 540, 588, 709
TaqII GACCGA 1 cut(s) 510
TauI GCSGC 6 cut(s) 80, 146, 193, 625, 808, 839
TfiI GAWTC 4 cut(s) 268, 273, 437, 826
TscAI CASTG 1 cut(s) 791
TseFI GTSAC 1 cut(s) 635
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 2 cut(s) 199, 400
TspRI CASTG 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 428
XceI RCATGY 1 cut(s) 733
XhoI CTCGAG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 692
XspI CTAG 2 cut(s) 432, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.