RLG00000030787

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014413
Physical Location & Seq
Reverse (-)
67497526 .. 67498277
752 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030787

Sequence Viewer

Length: 414 bp
ATGAGTCTGTTCCGGCCCAGATCAGACAAGTTTTGGATGGATCCTAGGGTATCATCGCGGGACTCGACTTCGACGTCCGCGGCTTCGCCGTCGTTGTTCTCGACGATCTTCGCCGGGAAAAGAAGGAAGCAATCGAAGCAGTTCTACTCGGACGATTCCACGATCCGAGTGAGATCCCGCCACAGAAGAGTGCGCAGAAGATCGCCTGATTTAGCGCATGACGCCGGCGGCGATGGCTGCGAGGACGACTGCGACCGAGGAACCTCATCTTGGCATGCAGAGAAGGCCTTGGCAGAGAAGAGGTGGCCAAGGTGTGTTACTGTGTTTGGGTATGGGTTTACTCTTCGATTTGGGAGTGTGAATTTGGAGAAGTGGAGGACTTTTGTAGGGAGGATTGGCTCTAGATTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

138

Amino Acids

15.75

Weight (kDa)

10.81

Isoelectric Point (pI)

77.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44600 AT3G60200
fragaria_vesca FvH4_7g08720
malus_domestica MD07G1088100.v1.1
prunus_persica Prupe.2G114900_v2.0.a1
pyrus_communis pycom02g19430 pycom07g07070
rosa_laevigata RLG00000028945 RLG00000030787
rosa_multiflora Rmu_ssc0000434.1_g000045
rosa_roxburghii Rroxscaffold_4G00310220
rosa_rugosa Rorug01G0169900
rosa_samantha Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana Rw1G015380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 73
AatII GACGTC 1 cut(s) 77
Acc16I TGCGCA 1 cut(s) 194
AccII CGCG 2 cut(s) 58, 80
AciI CCGC 5 cut(s) 58, 78, 80, 178, 228
AclWI GGATC 4 cut(s) 35, 48, 157, 168
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 1 cut(s) 361
AcyI GRCGYC 2 cut(s) 74, 222
AfiI CCNNNNNNNGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 253, 285
AlwI GGATC 4 cut(s) 35, 48, 157, 168
AoxI GGCC 3 cut(s) 14, 285, 305
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 361
Asp700I GAANNNNTTC 1 cut(s) 140
AspA2I CCTAGG 1 cut(s) 44
AspLEI GCGC 2 cut(s) 195, 217
AspS9I GGNCC 1 cut(s) 15
AsuC2I CCSGG 1 cut(s) 115
AvrII CCTAGG 1 cut(s) 44
BalI TGGCCA 1 cut(s) 307
BamHI GGATCC 1 cut(s) 40
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbvI GCAGC 1 cut(s) 224
BccI CCATC 2 cut(s) 31, 227
BceAI ACGGC 1 cut(s) 73
BcnI CCSGG 1 cut(s) 115
BfaI CTAG 2 cut(s) 45, 402
BisI GCNGC 3 cut(s) 81, 229, 238
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 3 cut(s) 82, 230, 239
Bme1390I CCNGG 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 2 cut(s) 42, 262
BmrFI CCNGG 1 cut(s) 115
BpuMI CCSGG 1 cut(s) 115
BsaHI GRCGYC 2 cut(s) 74, 222
BsaJI CCNNGG 5 cut(s) 44, 78, 256, 288, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 1 cut(s) 224
BseDI CCNNGG 5 cut(s) 44, 78, 256, 288, 308
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 224
Bsh1236I CGCG 2 cut(s) 58, 80
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 3 cut(s) 16, 287, 307
BsiEI CGRYCG 1 cut(s) 256
BsiSI CCGG 3 cut(s) 13, 114, 225
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 3 cut(s) 16, 287, 307
Bsp143I GATC 6 cut(s) 20, 40, 105, 162, 173, 200
BspACI CCGC 5 cut(s) 58, 78, 80, 178, 228
BspANI GGCC 3 cut(s) 16, 287, 307
BspFNI CGCG 2 cut(s) 58, 80
BspLI GGNNCC 2 cut(s) 42, 262
BspPI GGATC 4 cut(s) 35, 48, 157, 168
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 5 cut(s) 44, 78, 256, 288, 308
BssMI GATC 6 cut(s) 20, 40, 105, 162, 173, 200
BssNI GRCGYC 2 cut(s) 74, 222
BssT1I CCWWGG 3 cut(s) 44, 288, 308
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 3 cut(s) 181, 293, 348
BstACI GRCGYC 2 cut(s) 74, 222
BstC8I GCNNGC 2 cut(s) 226, 276
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 2 cut(s) 58, 80
BstHHI GCGC 2 cut(s) 195, 217
BstKTI GATC 6 cut(s) 23, 43, 108, 165, 176, 203
BstMBI GATC 6 cut(s) 20, 40, 105, 162, 173, 200
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 5 cut(s) 136, 221, 234, 237, 284
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 113
BstUI CGCG 2 cut(s) 58, 80
BstV1I GCAGC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 40, 173
BstYI RGATCY 2 cut(s) 40, 173
BsuRI GGCC 3 cut(s) 16, 287, 307
BtgI CCRYGG 1 cut(s) 78
BtgZI GCGATG 2 cut(s) 39, 246
BtsCI GGATG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 226, 276
CfoI GCGC 2 cut(s) 195, 217
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 15
Cfr42I CCGCGG 1 cut(s) 81
CseI GACGC 1 cut(s) 230
CviAII CATG 2 cut(s) 218, 275
CviJI RGCY 6 cut(s) 16, 83, 237, 287, 307, 399
CviKI_1 RGCY 6 cut(s) 16, 83, 237, 287, 307, 399
DpnI GATC 6 cut(s) 22, 42, 107, 164, 175, 202
DpnII GATC 6 cut(s) 20, 40, 105, 162, 173, 200
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 305
Eam1104I CTCTTC 3 cut(s) 181, 293, 348
EarI CTCTTC 3 cut(s) 181, 293, 348
Eco130I CCWWGG 3 cut(s) 44, 288, 308
Eco147I AGGCCT 1 cut(s) 287
EcoT14I CCWWGG 3 cut(s) 44, 288, 308
ErhI CCWWGG 3 cut(s) 44, 288, 308
FaeI CATG 2 cut(s) 221, 278
FaiI YATR 3 cut(s) 219, 276, 333
FaqI GGGAC 1 cut(s) 74
FatI CATG 2 cut(s) 217, 274
FauI CCCGC 2 cut(s) 51, 185
Fnu4HI GCNGC 3 cut(s) 81, 229, 238
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 81, 229, 238
FspBI CTAG 2 cut(s) 45, 402
FspI TGCGCA 1 cut(s) 194
GlaI GCGC 2 cut(s) 194, 216
GluI GCNGC 3 cut(s) 81, 229, 238
HaeIII GGCC 3 cut(s) 16, 287, 307
HapII CCGG 3 cut(s) 13, 114, 225
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 195, 217
Hin1I GRCGYC 2 cut(s) 74, 222
Hin1II CATG 2 cut(s) 221, 278
Hin6I GCGC 2 cut(s) 193, 215
HinP1I GCGC 2 cut(s) 193, 215
HinfI GANTC 3 cut(s) 4, 62, 155
HpaII CCGG 3 cut(s) 13, 114, 225
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 3 cut(s) 25, 151, 167
Hpy188III TCNNGA 2 cut(s) 100, 402
Hpy8I GTNNAC 1 cut(s) 339
Hpy99I CGWCG 3 cut(s) 76, 94, 106
HpyAV CCTTC 2 cut(s) 117, 277
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 221, 234, 237, 284
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 2 cut(s) 74, 222
Hsp92II CATG 2 cut(s) 221, 278
HspAI GCGC 2 cut(s) 193, 215
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
KspI CCGCGG 1 cut(s) 81
Kzo9I GATC 6 cut(s) 20, 40, 105, 162, 173, 200
LpnPI CCDG 5 cut(s) 26, 31, 127, 219, 238
Lsp1109I GCAGC 1 cut(s) 224
MaeI CTAG 2 cut(s) 45, 402
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 316
MalI GATC 6 cut(s) 22, 42, 107, 164, 175, 202
MboI GATC 6 cut(s) 20, 40, 105, 162, 173, 200
MboII GAAGA 5 cut(s) 100, 198, 210, 310, 335
MflI RGATCY 2 cut(s) 40, 173
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 2 cut(s) 361, 409
MluNI TGGCCA 1 cut(s) 307
MlyI GAGTC 2 cut(s) 13, 56
MnlI CCTC 6 cut(s) 235, 251, 274, 294, 369, 384
Mox20I TGGCCA 1 cut(s) 307
MreI CGCCGGCG 1 cut(s) 224
MroNI GCCGGC 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 307
MseI TTAA 2 cut(s) 407, 412
Msp20I TGGCCA 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 3 cut(s) 13, 114, 225
MspR9I CCNGG 1 cut(s) 115
MvnI CGCG 2 cut(s) 58, 80
MwoI GCNNNNNNNGC 5 cut(s) 136, 221, 234, 237, 284
NaeI GCCGGC 1 cut(s) 226
NciI CCSGG 1 cut(s) 115
NdeII GATC 6 cut(s) 20, 40, 105, 162, 173, 200
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 2 cut(s) 221, 278
NlaIV GGNNCC 2 cut(s) 42, 262
NsbI TGCGCA 1 cut(s) 194
NspI RCATGY 1 cut(s) 278
PaeI GCATGC 1 cut(s) 278
PceI AGGCCT 1 cut(s) 287
PcsI WCGNNNNNNNCGW 4 cut(s) 62, 71, 98, 228
PdiI GCCGGC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 3 cut(s) 82, 230, 239
PleI GAGTC 2 cut(s) 12, 56
PpsI GAGTC 2 cut(s) 12, 56
PspN4I GGNNCC 2 cut(s) 42, 262
PspPI GGNCC 1 cut(s) 15
PsuI RGATCY 2 cut(s) 40, 173
SacII CCGCGG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 407, 412
SatI GCNGC 3 cut(s) 81, 229, 238
Sau3AI GATC 6 cut(s) 20, 40, 105, 162, 173, 200
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 2 cut(s) 13, 56
ScrFI CCNGG 1 cut(s) 115
SetI ASST 4 cut(s) 77, 266, 305, 314
Sfr303I CCGCGG 1 cut(s) 81
SgrAI CRCCGGYG 1 cut(s) 224
SgrBI CCGCGG 1 cut(s) 81
SphI GCATGC 1 cut(s) 278
Sse9I AATT 2 cut(s) 361, 409
SseBI AGGCCT 1 cut(s) 287
SsiI CCGC 5 cut(s) 58, 78, 80, 178, 228
SspMI CTAG 2 cut(s) 45, 402
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 3 cut(s) 44, 288, 308
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 77
TaqI TCGA 5 cut(s) 65, 71, 101, 134, 346
TaqII GACCGA 1 cut(s) 270
TasI AATT 2 cut(s) 361, 409
TauI GCSGC 2 cut(s) 83, 231
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 407, 412
Tru9I TTAA 2 cut(s) 407, 412
TseI GCWGC 1 cut(s) 237
XapI RAATTY 1 cut(s) 361
XbaI TCTAGA 1 cut(s) 401
XceI RCATGY 1 cut(s) 278
XmaJI CCTAGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 2 cut(s) 45, 402
ZraI GACGTC 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.