Prupe.2G114900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014413
Physical Location & Seq
Forward (+)
17278914 .. 17280575
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G114900.1

Sequence Viewer

Length: 927 bp
ATGAGGTGCAAGAAGCACCTTTGCGACCTCACCAGCGCCGTCGGTGTCTGCTCCTCCTGCCTCCGGGAACGCCTCACCGCCCTCATCGAGGCCCAAACCAAGGCCCAGGCCCAGCTTTCTCGGCCCCACTCCCGGACCTCCGTGCCGCCCGATGAACCGAAGCGCAAGTCCGACCCGAACCCCCCGCCTCTCATCTTCCCTCGCTCCGTCTCCCCCTACGTTTCTCGAAGAAAATCGGACGACTCCACGTGGCACCACAACCACCGTCCAGATCATCAAAACCAGCAACAACAGCACCGTATTCGATTCTACAGTACGCCCCAGGTGGGCCCCACCTACAACAGCGCCACCAGCACCACCATTGAAGGGTCGTGCAGGAAGACCAAGACCAAGTTCTCGCTCTTCTCGAGCCTTTTCCGGTCCAGATCCGATAAGTTTTGGTCGGATCCTAGTTCTTCGACGGTTCAGCCCACGTCGTCCTCCTCGGCTTCGTCGCCGTCGTGGTTCTCGGCGATCTTCTCCGGAAAACGACGGAATCGATCGAAGCAGCTCTACGCCGACGAGTCCAACAACACCGGCGGGCAGAGACCTCGCGGGTTGTCGCCTGATATAACGCCCGATCCCTTCGAGGACTGCGAGCGATCGCGGTCAGGCAGCGGGGACTCTTCGGGGGCGACCCCGGAGTGGAAGCGGACACCGGCGCTGGCTCCATCGTCGACTCGGAGGACACGTGTTGGCCAGGGGAAGAACAACGTCTCGGGTCTGGCGTTTTGCCTGAGCCCGCTAGTTCGGGCCAGCCCGAACCGGAACTGGGGCCAGAAGGGGTTGCCGCCGGAGTTTGCCGGCGAGATTCGGGTTGCGGCGGCGTTTTGCAAGAACCGGTCGAGGAAGCTGGTGGATTTCGGTAGAGCCAATCCTAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

309

Amino Acids

34.2

Weight (kDa)

10.52

Isoelectric Point (pI)

68.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44600 AT3G60200
fragaria_vesca FvH4_7g08720
malus_domestica MD07G1088100.v1.1
prunus_persica Prupe.2G114900_v2.0.a1
pyrus_communis pycom02g19430 pycom07g07070
rosa_laevigata RLG00000028945 RLG00000030787
rosa_multiflora Rmu_ssc0000434.1_g000045
rosa_roxburghii Rroxscaffold_4G00310220
rosa_rugosa Rorug01G0169900
rosa_samantha Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana Rw1G015380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 716
AccII CGCG 2 cut(s) 594, 646
AccIII TCCGGA 1 cut(s) 521
AclWI GGATC 4 cut(s) 420, 440, 453, 614
AcoI YGGCCR 1 cut(s) 736
AcvI CACGTG 2 cut(s) 249, 731
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 8 cut(s) 63, 88, 100, 132, 326, 366, 684, 811
AflIII ACRYGT 2 cut(s) 728, 730
AgeI ACCGGT 1 cut(s) 879
AgsI TTSAA 1 cut(s) 365
AjiI CACGTC 1 cut(s) 474
AjnI CCWGG 3 cut(s) 105, 321, 738
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 3 cut(s) 115, 550, 892
AluI AGCT 3 cut(s) 115, 550, 892
Alw26I GTCTC 3 cut(s) 214, 580, 760
AlwI GGATC 4 cut(s) 420, 440, 453, 614
Ama87I CYCGRG 2 cut(s) 406, 757
Aor13HI TCCGGA 1 cut(s) 521
AoxI GGCC 8 cut(s) 90, 102, 108, 122, 328, 736, 792, 814
ApaI GGGCCC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 547, 654
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AsiGI ACCGGT 1 cut(s) 879
AsiSI GCGATCGC 1 cut(s) 644
AspLEI GCGC 4 cut(s) 38, 165, 347, 703
AsuC2I CCSGG 3 cut(s) 65, 133, 680
AsuHPI GGTGA 2 cut(s) 22, 67
AvaI CYCGRG 2 cut(s) 406, 757
AvaII GGWCC 2 cut(s) 135, 420
BaeGI GKGCMC 1 cut(s) 332
BalI TGGCCA 1 cut(s) 738
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 2 cut(s) 332, 782
BarI GAAGNNNNNNTAC 2 cut(s) 536, 568
BbrPI CACGTG 2 cut(s) 249, 731
BbsI GAAGAC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 559, 666
BccI CCATC 1 cut(s) 718
BceAI ACGGC 2 cut(s) 23, 481
BcgI CGANNNNNNTGC 4 cut(s) 284, 318, 572, 606
BciT130I CCWGG 3 cut(s) 107, 323, 740
BcnI CCSGG 3 cut(s) 65, 133, 680
BcoDI GTCTC 3 cut(s) 214, 580, 760
BfaI CTAG 2 cut(s) 450, 785
BfmI CTRYAG 1 cut(s) 310
BfoI RGCGCY 3 cut(s) 39, 348, 704
BisI GCNGC 6 cut(s) 146, 548, 655, 830, 861, 864
BlsI GCNGC 6 cut(s) 147, 549, 656, 831, 862, 865
Bme1390I CCNGG 6 cut(s) 65, 107, 133, 323, 680, 740
Bme18I GGWCC 2 cut(s) 135, 420
BmeT110I CYCGRG 2 cut(s) 406, 757
BmgBI CACGTC 1 cut(s) 474
BmiI GGNNCC 7 cut(s) 125, 254, 330, 331, 447, 708, 815
BmrFI CCNGG 6 cut(s) 65, 107, 133, 323, 680, 740
BmrI ACTGGG 1 cut(s) 820
BmuI ACTGGG 1 cut(s) 820
BpiI GAAGAC 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 776
BpuMI CCSGG 3 cut(s) 65, 133, 680
Bsa29I ATCGAT 1 cut(s) 538
BsaAI YACGTR 2 cut(s) 249, 731
BsaI GGTCTC 1 cut(s) 580
BsaJI CCNNGG 6 cut(s) 99, 105, 321, 483, 678, 739
BsaWI WCCGGW 4 cut(s) 417, 521, 804, 879
BsaXI ACNNNNNCTCC 2 cut(s) 715, 745
Bsc4I CCNNNNNNNGG 8 cut(s) 63, 88, 100, 132, 326, 366, 684, 811
Bse118I RCCGGY 4 cut(s) 575, 697, 842, 879
Bse1I ACTGG 1 cut(s) 815
BseAI TCCGGA 1 cut(s) 521
BseBI CCWGG 3 cut(s) 107, 323, 740
BseCI ATCGAT 1 cut(s) 538
BseDI CCNNGG 6 cut(s) 99, 105, 321, 483, 678, 739
BseLI CCNNNNNNNGG 8 cut(s) 63, 88, 100, 132, 326, 366, 684, 811
BseMII CTCAG 1 cut(s) 767
BseNI ACTGG 1 cut(s) 815
BseRI GAGGAG 2 cut(s) 43, 472
BseSI GKGCMC 1 cut(s) 332
BseXI GCAGC 2 cut(s) 559, 666
BseYI CCCAGC 1 cut(s) 111
BsgI GTGCAG 1 cut(s) 394
Bsh1236I CGCG 2 cut(s) 594, 646
Bsh1285I CGRYCG 3 cut(s) 542, 644, 884
BshFI GGCC 8 cut(s) 92, 104, 110, 124, 330, 738, 794, 816
BshNI GGYRCC 1 cut(s) 252
BshTI ACCGGT 1 cut(s) 879
BshVI ATCGAT 1 cut(s) 538
BsiEI CGRYCG 3 cut(s) 542, 644, 884
BsiHKCI CYCGRG 2 cut(s) 406, 757
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 8 cut(s) 63, 88, 100, 132, 326, 366, 684, 811
BsmAI GTCTC 3 cut(s) 214, 580, 760
BsmBI CGTCTC 2 cut(s) 214, 760
BsmFI GGGAC 1 cut(s) 674
BsnI GGCC 8 cut(s) 92, 104, 110, 124, 330, 738, 794, 816
Bso31I GGTCTC 1 cut(s) 580
BsoBI CYCGRG 2 cut(s) 406, 757
Bsp120I GGGCCC 1 cut(s) 328
Bsp1286I GDGCHC 2 cut(s) 332, 782
Bsp13I TCCGGA 1 cut(s) 521
Bsp143I GATC 7 cut(s) 271, 425, 445, 513, 539, 619, 641
BspANI GGCC 8 cut(s) 92, 104, 110, 124, 330, 738, 794, 816
BspCNI CTCAG 1 cut(s) 768
BspDI ATCGAT 1 cut(s) 538
BspEI TCCGGA 1 cut(s) 521
BspFNI CGCG 2 cut(s) 594, 646
BspLI GGNNCC 7 cut(s) 125, 254, 330, 331, 447, 708, 815
BspPI GGATC 4 cut(s) 420, 440, 453, 614
BspQI GCTCTTC 1 cut(s) 407
BspT107I GGYRCC 1 cut(s) 252
BspTNI GGTCTC 1 cut(s) 580
BsrFI RCCGGY 4 cut(s) 575, 697, 842, 879
BsrI ACTGG 1 cut(s) 815
BssAI RCCGGY 4 cut(s) 575, 697, 842, 879
BssECI CCNNGG 6 cut(s) 99, 105, 321, 483, 678, 739
BssMI GATC 7 cut(s) 271, 425, 445, 513, 539, 619, 641
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 3 cut(s) 107, 323, 740
Bst4CI ACNGT 5 cut(s) 266, 299, 314, 463, 923
Bst6I CTCTTC 2 cut(s) 407, 670
BstBAI YACGTR 2 cut(s) 249, 731
BstC8I GCNNGC 6 cut(s) 581, 638, 705, 782, 796, 844
BstDEI CTNAG 1 cut(s) 776
BstENI CCTNNNNNAGG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 594, 646
BstH2I RGCGCY 3 cut(s) 39, 348, 704
BstHHI GCGC 4 cut(s) 38, 165, 347, 703
BstKTI GATC 7 cut(s) 274, 428, 448, 516, 542, 622, 644
BstMAI GTCTC 3 cut(s) 214, 580, 760
BstMBI GATC 7 cut(s) 271, 425, 445, 513, 539, 619, 641
BstMCI CGRYCG 3 cut(s) 542, 644, 884
BstMWI GCNNNNNNNGC 4 cut(s) 57, 121, 292, 351
BstNI CCWGG 3 cut(s) 107, 323, 740
BstSCI CCNGG 6 cut(s) 63, 105, 131, 321, 678, 738
BstSFI CTRYAG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 332
BstUI CGCG 2 cut(s) 594, 646
BstV1I GCAGC 2 cut(s) 559, 666
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 2 cut(s) 425, 445
BstYI RGATCY 2 cut(s) 425, 445
Bsu15I ATCGAT 1 cut(s) 538
BsuRI GGCC 8 cut(s) 92, 104, 110, 124, 330, 738, 794, 816
BsuTUI ATCGAT 1 cut(s) 538
BtrI CACGTC 1 cut(s) 474
Cac8I GCNNGC 6 cut(s) 581, 638, 705, 782, 796, 844
CfoI GCGC 4 cut(s) 38, 165, 347, 703
Cfr10I RCCGGY 4 cut(s) 575, 697, 842, 879
ClaI ATCGAT 1 cut(s) 538
Csp6I GTAC 1 cut(s) 315
CspAI ACCGGT 1 cut(s) 879
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 1 cut(s) 776
DpnI GATC 7 cut(s) 273, 427, 447, 515, 541, 621, 643
DpnII GATC 7 cut(s) 271, 425, 445, 513, 539, 619, 641
EaeI YGGCCR 1 cut(s) 736
Eam1104I CTCTTC 2 cut(s) 407, 670
EarI CTCTTC 2 cut(s) 407, 670
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 2 cut(s) 332, 782
Eco31I GGTCTC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 135, 420
Eco72I CACGTG 2 cut(s) 249, 731
Eco88I CYCGRG 2 cut(s) 406, 757
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 329
EcoRII CCWGG 3 cut(s) 105, 321, 738
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 2 cut(s) 332, 782
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 2 cut(s) 214, 760
FaiI YATR 1 cut(s) 611
FaqI GGGAC 1 cut(s) 674
FauI CCCGC 5 cut(s) 192, 572, 587, 650, 789
FblI GTMKAC 1 cut(s) 716
Fnu4HI GCNGC 6 cut(s) 146, 548, 655, 830, 861, 864
FriOI GRGCYC 2 cut(s) 332, 782
Fsp4HI GCNGC 6 cut(s) 146, 548, 655, 830, 861, 864
FspBI CTAG 2 cut(s) 450, 785
GlaI GCGC 4 cut(s) 37, 164, 346, 702
GluI GCNGC 6 cut(s) 146, 548, 655, 830, 861, 864
GsaI CCCAGC 1 cut(s) 115
HaeII RGCGCY 3 cut(s) 39, 348, 704
HaeIII GGCC 8 cut(s) 92, 104, 110, 124, 330, 738, 794, 816
HhaI GCGC 4 cut(s) 38, 165, 347, 703
Hin6I GCGC 4 cut(s) 36, 163, 345, 701
HinP1I GCGC 4 cut(s) 36, 163, 345, 701
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HinfI GANTC 7 cut(s) 242, 306, 535, 563, 662, 718, 850
HphI GGTGA 2 cut(s) 22, 67
Hpy166II GTNNAC 1 cut(s) 717
Hpy188I TCNGA 5 cut(s) 172, 238, 430, 445, 723
Hpy188III TCNNGA 5 cut(s) 225, 269, 406, 423, 522
Hpy8I GTNNAC 1 cut(s) 717
Hpy99I CGWCG 8 cut(s) 44, 463, 478, 496, 502, 534, 563, 718
HpyAV CCTTC 3 cut(s) 359, 634, 814
HpyCH4III ACNGT 5 cut(s) 266, 299, 314, 463, 923
HpyCH4IV ACGT 5 cut(s) 219, 248, 473, 730, 753
HpyCH4V TGCA 3 cut(s) 9, 375, 873
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 121, 292, 351
HpyF3I CTNAG 1 cut(s) 776
HpySE526I ACGT 5 cut(s) 219, 248, 473, 730, 753
HspAI GCGC 4 cut(s) 36, 163, 345, 701
Kpn2I TCCGGA 1 cut(s) 521
KroI GCCGGC 1 cut(s) 842
KroNI GCCGGC 1 cut(s) 844
Kzo9I GATC 7 cut(s) 271, 425, 445, 513, 539, 619, 641
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 3 cut(s) 56, 209, 712
Lsp1109I GCAGC 2 cut(s) 559, 666
MaeI CTAG 2 cut(s) 450, 785
MaeII ACGT 5 cut(s) 219, 248, 473, 730, 753
MalI GATC 7 cut(s) 273, 427, 447, 515, 541, 621, 643
MboI GATC 7 cut(s) 271, 425, 445, 513, 539, 619, 641
MboII GAAGA 8 cut(s) 187, 240, 391, 394, 447, 508, 657, 757
MflI RGATCY 2 cut(s) 425, 445
MhlI GDGCHC 2 cut(s) 332, 782
MlsI TGGCCA 1 cut(s) 738
MluNI TGGCCA 1 cut(s) 738
MlyI GAGTC 4 cut(s) 236, 572, 656, 712
MmeI TCCRAC 3 cut(s) 195, 423, 591
Mox20I TGGCCA 1 cut(s) 738
MroI TCCGGA 1 cut(s) 521
MroNI GCCGGC 1 cut(s) 842
MscI TGGCCA 1 cut(s) 738
Msp20I TGGCCA 1 cut(s) 738
MspA1I CMGCKG 1 cut(s) 657
MspR9I CCNGG 6 cut(s) 65, 107, 133, 323, 680, 740
MvaI CCWGG 3 cut(s) 107, 323, 740
MvnI CGCG 2 cut(s) 594, 646
MwoI GCNNNNNNNGC 4 cut(s) 57, 121, 292, 351
NaeI GCCGGC 1 cut(s) 844
NciI CCSGG 3 cut(s) 65, 133, 680
NdeII GATC 7 cut(s) 271, 425, 445, 513, 539, 619, 641
NgoMIV GCCGGC 1 cut(s) 842
NlaIV GGNNCC 7 cut(s) 125, 254, 330, 331, 447, 708, 815
NmeAIII GCCGAG 3 cut(s) 100, 464, 488
PaeR7I CTCGAG 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 407
PcsI WCGNNNNNNNCGW 6 cut(s) 404, 497, 535, 633, 727, 764
PdiI GCCGGC 1 cut(s) 844
PfeI GAWTC 3 cut(s) 306, 535, 850
PfoI TCCNGGA 2 cut(s) 63, 131
PinAI ACCGGT 1 cut(s) 879
PkrI GCNGC 6 cut(s) 147, 549, 656, 831, 862, 865
Ple19I CGATCG 2 cut(s) 542, 644
PleI GAGTC 4 cut(s) 236, 571, 656, 712
PmaCI CACGTG 2 cut(s) 249, 731
PmlI CACGTG 2 cut(s) 249, 731
PpsI GAGTC 4 cut(s) 236, 571, 656, 712
Ppu21I YACGTR 2 cut(s) 249, 731
Psp6I CCWGG 3 cut(s) 105, 321, 738
PspCI CACGTG 2 cut(s) 249, 731
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 3 cut(s) 105, 321, 738
PspN4I GGNNCC 7 cut(s) 125, 254, 330, 331, 447, 708, 815
PspOMI GGGCCC 1 cut(s) 328
PsuI RGATCY 2 cut(s) 425, 445
PvuI CGATCG 2 cut(s) 542, 644
RgaI GCGATCGC 1 cut(s) 644
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SalI GTCGAC 1 cut(s) 715
SapI GCTCTTC 1 cut(s) 407
SatI GCNGC 6 cut(s) 146, 548, 655, 830, 861, 864
Sau3AI GATC 7 cut(s) 271, 425, 445, 513, 539, 619, 641
SchI GAGTC 4 cut(s) 236, 572, 656, 712
ScrFI CCNGG 6 cut(s) 65, 107, 133, 323, 680, 740
SduI GDGCHC 2 cut(s) 332, 782
SfaAI GCGATCGC 1 cut(s) 644
SfcI CTRYAG 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 406
SgfI GCGATCGC 1 cut(s) 644
SgrAI CRCCGGYG 2 cut(s) 575, 697
SinI GGWCC 2 cut(s) 135, 420
SlaI CTCGAG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SspMI CTAG 2 cut(s) 450, 785
StyD4I CCNGG 6 cut(s) 63, 105, 131, 321, 678, 738
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 5 cut(s) 266, 299, 314, 463, 923
TaiI ACGT 5 cut(s) 222, 251, 476, 733, 756
TauI GCSGC 4 cut(s) 148, 832, 863, 866
TfiI GAWTC 3 cut(s) 306, 535, 850
TseI GCWGC 2 cut(s) 547, 654
TspDTI ATGAA 1 cut(s) 168
TspGWI ACGGA 3 cut(s) 130, 196, 547
VpaK11BI GGWCC 2 cut(s) 135, 420
XagI CCTNNNNNAGG 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 716
XspI CTAG 2 cut(s) 450, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.