Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014413

Physical Location & Seq

Genomic Coordinates Reverse (-)

2512810 .. 2513076

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG022200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCGTCCTCATGAGTTTGACAAATCCGACGACTCCGCCTGGCCGCACCACCACAATCGGTCCGATCACGACCACAACCACCAACGCCATCATATTGGCTTCTACAGTACGTCCCAGGTGGGGCCTACCTATGACGGAGGACCAGCCACTATCGGAGGCTCCTTCAAGAAGAGCAAGCCCAAGTTTTCGCTCCTGACGAGTCTGTTCCGGTCCAGATCCGACAAGTTCTGGACGGATCCTAGGGTATCGTCGCGGGACTCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

88

Amino Acids

10.13

Weight (kDa)

9.52

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44600 AT3G60200
fragaria_vesca	FvH4_7g08720
malus_domestica	MD07G1088100.v1.1
prunus_persica	Prupe.2G114900_v2.0.a1
pyrus_communis	pycom02g19430 pycom07g07070
rosa_laevigata	RLG00000028945 RLG00000030787
rosa_multiflora	Rmu_ssc0000434.1_g000045
rosa_roxburghii	Rroxscaffold_4G00310220
rosa_rugosa	Rorug01G0169900
rosa_samantha	Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana	Rw1G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	253
AciI	CCGC	3 cut(s)	36, 44, 253
AclWI	GGATC	3 cut(s)	210, 230, 243
AcoI	YGGCCR	1 cut(s)	41
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	38, 114
AlwI	GGATC	3 cut(s)	210, 230, 243
AoxI	GGCC	2 cut(s)	41, 122
AspA2I	CCTAGG	1 cut(s)	239
AspS9I	GGNCC	4 cut(s)	60, 122, 140, 210
AvaII	GGWCC	3 cut(s)	60, 140, 210
AvrII	CCTAGG	1 cut(s)	239
BamHI	GGATCC	1 cut(s)	235
BccI	CCATC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	40, 116
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	103
BisI	GCNGC	1 cut(s)	44
BlnI	CCTAGG	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	2 cut(s)	40, 116
Bme18I	GGWCC	3 cut(s)	60, 140, 210
BmgT120I	GGNCC	4 cut(s)	60, 122, 140, 210
BmiI	GGNNCC	3 cut(s)	123, 160, 237
BmrFI	CCNGG	2 cut(s)	40, 116
BsaJI	CCNNGG	2 cut(s)	114, 239
BsaWI	WCCGGW	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	40, 116
BseDI	CCNNGG	2 cut(s)	114, 239
BseLI	CCNNNNNNNGG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	43, 124
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	43, 124
Bsp143I	GATC	3 cut(s)	64, 215, 235
BspACI	CCGC	3 cut(s)	36, 44, 253
BspANI	GGCC	2 cut(s)	43, 124
BspFNI	CGCG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	3 cut(s)	123, 160, 237
BspPI	GGATC	3 cut(s)	210, 230, 243
BspQI	GCTCTTC	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	114, 239
BssMI	GATC	3 cut(s)	64, 215, 235
BssT1I	CCWWGG	1 cut(s)	239
Bst2UI	CCWGG	2 cut(s)	40, 116
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	67, 218, 238
BstMBI	GATC	3 cut(s)	64, 215, 235
BstNI	CCWGG	2 cut(s)	40, 116
BstSCI	CCNGG	2 cut(s)	38, 114
BstSFI	CTRYAG	1 cut(s)	103
BstUI	CGCG	1 cut(s)	253
BstX2I	RGATCY	2 cut(s)	215, 235
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	2 cut(s)	215, 235
BsuRI	GGCC	2 cut(s)	43, 124
Cac8I	GCNNGC	1 cut(s)	176
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	4 cut(s)	60, 122, 140, 210
CpoI	CGGWCCG	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	108
CspI	CGGWCCG	1 cut(s)	60
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	6 cut(s)	43, 99, 124, 146, 159, 178
CviKI_1	RGCY	6 cut(s)	43, 99, 124, 146, 159, 178
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	3 cut(s)	66, 217, 237
DpnII	GATC	3 cut(s)	64, 215, 235
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	239
Eco47I	GGWCC	3 cut(s)	60, 140, 210
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	38, 114
EcoT14I	CCWWGG	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	1 cut(s)	14
FaiI	YATR	3 cut(s)	12, 93, 132
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	1 cut(s)	10
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	43, 124
HapII	CCGG	1 cut(s)	208
Hin1II	CATG	1 cut(s)	14
HinfI	GANTC	3 cut(s)	32, 199, 257
HpaII	CCGG	1 cut(s)	208
Hpy188I	TCNGA	4 cut(s)	28, 64, 155, 220
Hpy188III	TCNNGA	6 cut(s)	11, 68, 166, 193, 213, 229
Hpy99I	CGWCG	2 cut(s)	32, 253
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	14
Kzo9I	GATC	3 cut(s)	64, 215, 235
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	164, 195
LpnPI	CCDG	9 cut(s)	25, 52, 101, 128, 156, 206, 214, 221, 226
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	110
MalI	GATC	3 cut(s)	66, 217, 237
MboI	GATC	3 cut(s)	64, 215, 235
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	2 cut(s)	215, 235
MlyI	GAGTC	3 cut(s)	26, 208, 251
MmeI	TCCRAC	2 cut(s)	51, 243
MnlI	CCTC	3 cut(s)	18, 131, 149
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	2 cut(s)	40, 116
MvaI	CCWGG	2 cut(s)	40, 116
MvnI	CGCG	1 cut(s)	253
NdeII	GATC	3 cut(s)	64, 215, 235
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	3 cut(s)	123, 160, 237
PagI	TCATGA	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	2 cut(s)	194, 257
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	3 cut(s)	26, 207, 251
PpsI	GAGTC	3 cut(s)	26, 207, 251
Psp6I	CCWGG	2 cut(s)	38, 114
PspGI	CCWGG	2 cut(s)	38, 114
PspN4I	GGNNCC	3 cut(s)	123, 160, 237
PspPI	GGNCC	4 cut(s)	60, 122, 140, 210
PsuI	RGATCY	2 cut(s)	215, 235
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
Rsr2I	CGGWCCG	1 cut(s)	60
RsrII	CGGWCCG	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	164
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	3 cut(s)	64, 215, 235
Sau96I	GGNCC	4 cut(s)	60, 122, 140, 210
SchI	GAGTC	3 cut(s)	26, 208, 251
ScrFI	CCNGG	2 cut(s)	40, 116
SetI	ASST	3 cut(s)	113, 120, 131
SfcI	CTRYAG	1 cut(s)	103
SinI	GGWCC	3 cut(s)	60, 140, 210
SsiI	CCGC	3 cut(s)	36, 44, 253
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	38, 114
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	260
TaqII	GACCGA	1 cut(s)	48
TauI	GCSGC	1 cut(s)	46
TspGWI	ACGGA	2 cut(s)	150, 248
VpaK11BI	GGWCC	3 cut(s)	60, 140, 210
XmaJI	CCTAGG	1 cut(s)	239
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.