RLG00000028945

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014413
Physical Location & Seq
Reverse (-)
30452995 .. 30453999
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028945

Sequence Viewer

Length: 1005 bp
ATGAGGTGCAAGAAGCACGCCGCCGACCTCACCAGCGCCGTCGGCGTCTGCGCCTCTTGTCTCCGGGAACGACTGACCGCCATCATCGAGGCCCAGACCCGGGCCCAGGCCCAACTACAACTCCAGGCTCAGCTCTCCCGGCTCCACTCCCGCAGCAACGGCGTCGCTCCAGAAGAACCCCTCAAGTCCGACCCCAACCCCCCGCCGCTCATCTTCCCCCGCTCCGTCTCCCCCTACGTTTCTCGCCGCAAATCCGACTACTCCGCCTGGCCGCACCACCACAATCGCTCCGATCACGACCACGACCACAACCACAACCACAACCACAACCACCAGCGCCATCATATTCGCTTCTACAGTACTCCCCAGGTGGGACCTACCTACGACGGAGGAACCGCCACTGTCGGAGGCTCGTACAGGAAGAGCAAGCCCAAGTTTTCGCTCCTGACGAGTCTGTTCCGGTCCAGATCCGACAAGTTCTGCACGGATCCTACGGTTTCGTCGCGGGACTCAACTTCGACGTCGCCTTCGCCGTCGTGGTTCTCGACGATCTTCGCCGGGAAAAGAGGGAAGCAATCGAAGCAGTTCTACTCCGACGAGTCCTCGATCCGAGTGAGATCTCGCCACAGAAGAGCCCGCGGAATGTCGCCTGATTTAACGCACGACGCCGGCGGCGGTGGCTGCGAGGACGACTGCGACCGATCGGCCTCCGGCAGCGGGTCCTCATCGACGCCGGATTGGAAGAGGACTCCGGTGCAGGCCACGCCGTCGCGGCGGACGCGCTCGGGTCCGGTTAAGAATGTGTCGGGTCTGACGTTCTGCCTGAGCCCGCTGGTTCGGGCCAGCCCGAACCCGCACTGGAACCAGAAGTGCATGCAGGGCTTCCCGGCGGAGGTTGGCGAGGTCAGGGTGGCGACGAAGCCACACTTGGCCACAGCGGCGTCGTTTAGCATGAACCGGTCGAGGAAGCTTGCAGATATCGGTAGAGCCACTTCCAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

335

Amino Acids

36.9

Weight (kDa)

10.3

Isoelectric Point (pI)

70.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44600 AT3G60200
fragaria_vesca FvH4_7g08720
malus_domestica MD07G1088100.v1.1
prunus_persica Prupe.2G114900_v2.0.a1
pyrus_communis pycom02g19430 pycom07g07070
rosa_laevigata RLG00000028945 RLG00000030787
rosa_multiflora Rmu_ssc0000434.1_g000045
rosa_roxburghii Rroxscaffold_4G00310220
rosa_rugosa Rorug01G0169900
rosa_samantha Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana Rw1G015380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 524
AccBSI CCGCTC 2 cut(s) 208, 222
AccII CGCG 4 cut(s) 505, 639, 772, 781
AclWI GGATC 4 cut(s) 462, 482, 495, 601
AcoI YGGCCR 2 cut(s) 269, 930
AcyI GRCGYC 6 cut(s) 45, 162, 521, 666, 731, 941
AfaI GTAC 2 cut(s) 361, 416
AfiI CCNNNNNNNGG 6 cut(s) 99, 100, 106, 371, 717, 892
AgeI ACCGGT 1 cut(s) 957
AjnI CCWGG 4 cut(s) 105, 123, 266, 366
AjuI GAANNNNNNNTTGG 2 cut(s) 911, 943
AluBI AGCT 2 cut(s) 133, 970
AluI AGCT 2 cut(s) 133, 970
Alw26I GTCTC 2 cut(s) 65, 232
AlwI GGATC 4 cut(s) 462, 482, 495, 601
Ama87I CYCGRG 2 cut(s) 99, 784
AoxI GGCC 8 cut(s) 90, 102, 108, 269, 705, 759, 840, 930
ApaI GGGCCC 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 153, 681, 714
ArsI GACNNNNNNTTYG 2 cut(s) 511, 543
AsiGI ACCGGT 1 cut(s) 957
Asp700I GAANNNNTTC 1 cut(s) 584
AspLEI GCGC 4 cut(s) 38, 53, 339, 783
AspS9I GGNCC 9 cut(s) 91, 102, 103, 109, 374, 462, 720, 788, 840
AsuC2I CCSGG 6 cut(s) 65, 100, 101, 139, 559, 887
AsuHPI GGTGA 1 cut(s) 22
AvaI CYCGRG 2 cut(s) 99, 784
AvaII GGWCC 4 cut(s) 374, 462, 720, 788
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 932
BamHI GGATCC 1 cut(s) 487
BanII GRGCYC 3 cut(s) 106, 637, 830
BarI GAAGNNNNNNTAC 3 cut(s) 572, 604, 976
BbvI GCAGC 3 cut(s) 165, 668, 726
BccI CCATC 2 cut(s) 89, 348
BceAI ACGGC 4 cut(s) 23, 175, 517, 751
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 4 cut(s) 107, 125, 268, 368
BcnI CCSGG 6 cut(s) 65, 100, 101, 139, 559, 887
BcoDI GTCTC 2 cut(s) 65, 232
BfmI CTRYAG 1 cut(s) 355
BfoI RGCGCY 2 cut(s) 39, 340
BglI GCCNNNNNGGC 2 cut(s) 772, 938
BglII AGATCT 1 cut(s) 617
BlpI GCTNAGC 1 cut(s) 129
BmcAI AGTACT 1 cut(s) 361
Bme18I GGWCC 4 cut(s) 374, 462, 720, 788
BmeT110I CYCGRG 2 cut(s) 99, 784
BmgT120I GGNCC 9 cut(s) 91, 102, 103, 109, 374, 462, 720, 788, 840
BmiI GGNNCC 8 cut(s) 104, 143, 375, 394, 489, 721, 789, 863
BpmI CTGGAG 2 cut(s) 107, 153
Bpu10I CCTNAGC 1 cut(s) 824
Bpu1102I GCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 6 cut(s) 65, 100, 101, 139, 559, 887
BsaHI GRCGYC 6 cut(s) 45, 162, 521, 666, 731, 941
BsaJI CCNNGG 4 cut(s) 99, 105, 366, 637
BsaWI WCCGGW 4 cut(s) 459, 751, 790, 957
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 272, 302
Bsc4I CCNNNNNNNGG 6 cut(s) 99, 100, 106, 371, 717, 892
Bse118I RCCGGY 2 cut(s) 668, 957
Bse1I ACTGG 1 cut(s) 863
BseBI CCWGG 4 cut(s) 107, 125, 268, 368
BseDI CCNNGG 4 cut(s) 99, 105, 366, 637
BseLI CCNNNNNNNGG 6 cut(s) 99, 100, 106, 371, 717, 892
BseMII CTCAG 2 cut(s) 143, 815
BseNI ACTGG 1 cut(s) 863
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 3 cut(s) 165, 668, 726
BsgI GTGCAG 2 cut(s) 466, 776
Bsh1236I CGCG 4 cut(s) 505, 639, 772, 781
Bsh1285I CGRYCG 3 cut(s) 700, 704, 962
BshFI GGCC 8 cut(s) 92, 104, 110, 271, 707, 761, 842, 932
BshTI ACCGGT 1 cut(s) 957
BsiEI CGRYCG 3 cut(s) 700, 704, 962
BsiHKCI CYCGRG 2 cut(s) 99, 784
BslFI GGGAC 2 cut(s) 387, 521
BslI CCNNNNNNNGG 6 cut(s) 99, 100, 106, 371, 717, 892
BsmAI GTCTC 2 cut(s) 65, 232
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 387, 521
BsnI GGCC 8 cut(s) 92, 104, 110, 271, 707, 761, 842, 932
BsoBI CYCGRG 2 cut(s) 99, 784
Bsp120I GGGCCC 1 cut(s) 102
Bsp1286I GDGCHC 3 cut(s) 106, 637, 830
Bsp143I GATC 7 cut(s) 292, 467, 487, 549, 606, 617, 701
Bsp1720I GCTNAGC 1 cut(s) 129
BspANI GGCC 8 cut(s) 92, 104, 110, 271, 707, 761, 842, 932
BspCNI CTCAG 2 cut(s) 142, 816
BspFNI CGCG 4 cut(s) 505, 639, 772, 781
BspLI GGNNCC 8 cut(s) 104, 143, 375, 394, 489, 721, 789, 863
BspPI GGATC 4 cut(s) 462, 482, 495, 601
BspQI GCTCTTC 2 cut(s) 416, 625
BsrBI CCGCTC 2 cut(s) 208, 222
BsrFI RCCGGY 2 cut(s) 668, 957
BsrI ACTGG 1 cut(s) 863
BssAI RCCGGY 2 cut(s) 668, 957
BssECI CCNNGG 4 cut(s) 99, 105, 366, 637
BssMI GATC 7 cut(s) 292, 467, 487, 549, 606, 617, 701
BssNI GRCGYC 6 cut(s) 45, 162, 521, 666, 731, 941
Bst2UI CCWGG 4 cut(s) 107, 125, 268, 368
Bst4CI ACNGT 4 cut(s) 359, 403, 496, 1001
Bst6I CTCTTC 3 cut(s) 416, 625, 737
BstACI GRCGYC 6 cut(s) 45, 162, 521, 666, 731, 941
BstC8I GCNNGC 9 cut(s) 18, 428, 637, 670, 759, 830, 844, 875, 972
BstDEI CTNAG 2 cut(s) 129, 824
BstDSI CCRYGG 1 cut(s) 637
BstFNI CGCG 4 cut(s) 505, 639, 772, 781
BstH2I RGCGCY 2 cut(s) 39, 340
BstHHI GCGC 4 cut(s) 38, 53, 339, 783
BstKTI GATC 7 cut(s) 295, 470, 490, 552, 609, 620, 704
BstMAI GTCTC 2 cut(s) 65, 232
BstMBI GATC 7 cut(s) 292, 467, 487, 549, 606, 617, 701
BstMCI CGRYCG 3 cut(s) 700, 704, 962
BstNI CCWGG 4 cut(s) 107, 125, 268, 368
BstNSI RCATGY 1 cut(s) 877
BstSFI CTRYAG 1 cut(s) 355
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 4 cut(s) 505, 639, 772, 781
BstV1I GCAGC 3 cut(s) 165, 668, 726
BstX2I RGATCY 3 cut(s) 467, 487, 617
BstYI RGATCY 3 cut(s) 467, 487, 617
BsuRI GGCC 8 cut(s) 92, 104, 110, 271, 707, 761, 842, 932
BtgI CCRYGG 1 cut(s) 637
BtsIMutI CAGTG 2 cut(s) 399, 856
Cac8I GCNNGC 9 cut(s) 18, 428, 637, 670, 759, 830, 844, 875, 972
CfoI GCGC 4 cut(s) 38, 53, 339, 783
Cfr10I RCCGGY 2 cut(s) 668, 957
Cfr13I GGNCC 9 cut(s) 91, 102, 103, 109, 374, 462, 720, 788, 840
Cfr42I CCGCGG 1 cut(s) 640
Cfr9I CCCGGG 1 cut(s) 99
CseI GACGC 6 cut(s) 34, 151, 674, 739, 787, 930
Csp6I GTAC 2 cut(s) 360, 415
CspAI ACCGGT 1 cut(s) 957
CviAII CATG 2 cut(s) 874, 952
CviQI GTAC 2 cut(s) 360, 415
DdeI CTNAG 2 cut(s) 129, 824
DpnI GATC 7 cut(s) 294, 469, 489, 551, 608, 619, 703
DpnII GATC 7 cut(s) 292, 467, 487, 549, 606, 617, 701
EaeI YGGCCR 2 cut(s) 269, 930
Eam1104I CTCTTC 3 cut(s) 416, 625, 737
EarI CTCTTC 3 cut(s) 416, 625, 737
EciI GGCGGA 3 cut(s) 253, 790, 905
Eco24I GRGCYC 3 cut(s) 106, 637, 830
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 4 cut(s) 374, 462, 720, 788
Eco88I CYCGRG 2 cut(s) 99, 784
EcoO109I RGGNCCY 2 cut(s) 374, 720
EcoRII CCWGG 4 cut(s) 105, 123, 266, 366
EcoRV GATATC 1 cut(s) 979
EcoT38I GRGCYC 3 cut(s) 106, 637, 830
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 2 cut(s) 877, 955
FaiI YATR 3 cut(s) 345, 875, 953
FalI AAGNNNNNCTT 2 cut(s) 911, 943
FaqI GGGAC 2 cut(s) 387, 521
FatI CATG 2 cut(s) 873, 951
FauI CCCGC 8 cut(s) 158, 210, 227, 498, 644, 710, 837, 861
FriOI GRGCYC 3 cut(s) 106, 637, 830
GlaI GCGC 4 cut(s) 37, 52, 338, 782
GsuI CTGGAG 2 cut(s) 107, 153
HaeII RGCGCY 2 cut(s) 39, 340
HaeIII GGCC 8 cut(s) 92, 104, 110, 271, 707, 761, 842, 932
HgaI GACGC 6 cut(s) 34, 151, 674, 739, 787, 930
HhaI GCGC 4 cut(s) 38, 53, 339, 783
Hin1I GRCGYC 6 cut(s) 45, 162, 521, 666, 731, 941
Hin1II CATG 2 cut(s) 877, 955
Hin6I GCGC 4 cut(s) 36, 51, 337, 781
HinP1I GCGC 4 cut(s) 36, 51, 337, 781
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 4 cut(s) 451, 509, 599, 748
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 8 cut(s) 190, 256, 292, 407, 472, 595, 611, 813
Hpy188III TCNNGA 5 cut(s) 170, 296, 445, 465, 544
HpyAV CCTTC 1 cut(s) 537
HpyCH4III ACNGT 4 cut(s) 359, 403, 496, 1001
HpyCH4IV ACGT 3 cut(s) 237, 521, 815
HpyCH4V TGCA 6 cut(s) 9, 483, 757, 873, 877, 974
HpyF3I CTNAG 2 cut(s) 129, 824
HpySE526I ACGT 3 cut(s) 237, 521, 815
Hsp92I GRCGYC 6 cut(s) 45, 162, 521, 666, 731, 941
Hsp92II CATG 2 cut(s) 877, 955
HspAI GCGC 4 cut(s) 36, 51, 337, 781
KroI GCCGGC 1 cut(s) 668
KroNI GCCGGC 1 cut(s) 670
KspI CCGCGG 1 cut(s) 640
Kzo9I GATC 7 cut(s) 292, 467, 487, 549, 606, 617, 701
LguI GCTCTTC 2 cut(s) 416, 625
LmnI GCTCC 5 cut(s) 147, 172, 227, 293, 447
Lsp1109I GCAGC 3 cut(s) 165, 668, 726
MaeII ACGT 3 cut(s) 237, 521, 815
MalI GATC 7 cut(s) 294, 469, 489, 551, 608, 619, 703
MbiI CCGCTC 2 cut(s) 208, 222
MboI GATC 7 cut(s) 292, 467, 487, 549, 606, 617, 701
MboII GAAGA 6 cut(s) 185, 205, 433, 544, 642, 754
MflI RGATCY 3 cut(s) 467, 487, 617
MhlI GDGCHC 3 cut(s) 106, 637, 830
MlsI TGGCCA 1 cut(s) 932
MluNI TGGCCA 1 cut(s) 932
MlyI GAGTC 4 cut(s) 460, 503, 608, 742
MmeI TCCRAC 5 cut(s) 213, 279, 385, 495, 618
Mox20I TGGCCA 1 cut(s) 932
MreI CGCCGGCG 1 cut(s) 668
MroNI GCCGGC 1 cut(s) 668
MroXI GAANNNNTTC 1 cut(s) 584
MscI TGGCCA 1 cut(s) 932
MseI TTAA 2 cut(s) 656, 795
Msp20I TGGCCA 1 cut(s) 932
MspA1I CMGCKG 4 cut(s) 639, 717, 832, 938
MvaI CCWGG 4 cut(s) 107, 125, 268, 368
MvnI CGCG 4 cut(s) 505, 639, 772, 781
NaeI GCCGGC 1 cut(s) 670
NciI CCSGG 6 cut(s) 65, 100, 101, 139, 559, 887
NdeII GATC 7 cut(s) 292, 467, 487, 549, 606, 617, 701
NgoMIV GCCGGC 1 cut(s) 668
NlaIII CATG 2 cut(s) 877, 955
NlaIV GGNNCC 8 cut(s) 104, 143, 375, 394, 489, 721, 789, 863
NspI RCATGY 1 cut(s) 877
PaeI GCATGC 1 cut(s) 877
PciSI GCTCTTC 2 cut(s) 416, 625
PcsI WCGNNNNNNNCGW 4 cut(s) 446, 530, 542, 812
PdiI GCCGGC 1 cut(s) 670
PdmI GAANNNNTTC 1 cut(s) 584
PfoI TCCNGGA 1 cut(s) 63
PinAI ACCGGT 1 cut(s) 957
Ple19I CGATCG 1 cut(s) 704
PleI GAGTC 4 cut(s) 459, 503, 607, 742
PpsI GAGTC 4 cut(s) 459, 503, 607, 742
PpuMI RGGWCCY 2 cut(s) 374, 720
Psp5II RGGWCCY 2 cut(s) 374, 720
Psp6I CCWGG 4 cut(s) 105, 123, 266, 366
PspGI CCWGG 4 cut(s) 105, 123, 266, 366
PspN4I GGNNCC 8 cut(s) 104, 143, 375, 394, 489, 721, 789, 863
PspOMI GGGCCC 1 cut(s) 102
PspPI GGNCC 9 cut(s) 91, 102, 103, 109, 374, 462, 720, 788, 840
PspPPI RGGWCCY 2 cut(s) 374, 720
PsuI RGATCY 3 cut(s) 467, 487, 617
PvuI CGATCG 1 cut(s) 704
RsaI GTAC 2 cut(s) 361, 416
RsaNI GTAC 2 cut(s) 360, 415
SacII CCGCGG 1 cut(s) 640
SapI GCTCTTC 2 cut(s) 416, 625
SaqAI TTAA 2 cut(s) 656, 795
Sau3AI GATC 7 cut(s) 292, 467, 487, 549, 606, 617, 701
Sau96I GGNCC 9 cut(s) 91, 102, 103, 109, 374, 462, 720, 788, 840
ScaI AGTACT 1 cut(s) 361
SchI GAGTC 4 cut(s) 460, 503, 608, 742
SduI GDGCHC 3 cut(s) 106, 637, 830
SfcI CTRYAG 1 cut(s) 355
Sfr303I CCGCGG 1 cut(s) 640
SgrAI CRCCGGYG 1 cut(s) 668
SgrBI CCGCGG 1 cut(s) 640
SinI GGWCC 4 cut(s) 374, 462, 720, 788
SmaI CCCGGG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SphI GCATGC 1 cut(s) 877
TaaI ACNGT 4 cut(s) 359, 403, 496, 1001
TaiI ACGT 3 cut(s) 240, 524, 818
TaqI TCGA 7 cut(s) 87, 518, 545, 578, 605, 728, 962
TaqII GACCGA 1 cut(s) 714
TatI WGTACW 1 cut(s) 359
TauI GCSGC 7 cut(s) 23, 208, 249, 274, 675, 775, 941
Tru1I TTAA 2 cut(s) 656, 795
Tru9I TTAA 2 cut(s) 656, 795
TscAI CASTG 2 cut(s) 406, 863
TseI GCWGC 3 cut(s) 153, 681, 714
TspDTI ATGAA 1 cut(s) 968
TspGWI ACGGA 3 cut(s) 214, 402, 500
TspMI CCCGGG 1 cut(s) 99
TspRI CASTG 2 cut(s) 406, 863
VpaK11BI GGWCC 4 cut(s) 374, 462, 720, 788
XceI RCATGY 1 cut(s) 877
XmaI CCCGGG 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 584
ZraI GACGTC 1 cut(s) 522
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.