AT3G60200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014413
Physical Location & Seq
Forward (+)
22248892 .. 22250568
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60200.1

Sequence Viewer

Length: 918 bp
ATGAGGTGTAAAAGACACACCGTCGATCTCAGCAGCAGCAACGGCGTTTGCGCTTCTTGCCTCCGTGAACGTCTCCTCTCTCTCGCCGCTTCCGCCGCCGTATCAGCCGCCGTAGAAGATAATCAATCAAAGAAATCTAATAACAATAATCATCCTCCGCTTTTGATTTTCCCTCGCTCTGTTTCTCCTTACGTTACCCGTAGAAAATCCGACGCCGGAGCCGGTGGAGGAGATCCTTTAGTTTCTTCTAATCGGAGATTCATTACCACGCCACAGATAGATCTCGTCGGATATTCATGCAAAGATTTCGAATCGAATCGATCAAATAAATCAAAACAAGGTAAAAAAGTATCTAGATTCTCGAATCTATTCAGAGCTAGATCTGAAGATTTCGATACCAATCCCAAATCCAACAATCCTAGATTCTCCTCATGCGACGCGTCTGAGATTTCATCTTCTTCTTCCTCTTCACGTTCATGGATCTCGACGATTCTCTCCACCGGTCGACGTAAAAAGCAACCAACCACCGCGTGTTACATCGAAGACGTTATCGCTGCGCGTAGACCTCAACGTATATACTGTAGAGGAATGTCACCTGTAAGAGATACGGAACCGGAGCAGTCGGCGGAATCAATCGAGGAATTGAGGAGAACTCCGGCGACGAAAACTCCGGGAAGGAGGAAGATTGCGATGGGGATAGGGAAGAGCATGTCGGGGATGGCTTTTTGTTTGAGTCCGTTGGTGAGAGCTAGTCCTAACTGTCCGTTTAAACGGAAAATGAGATTTCCATCGGAGTTTGGTAATTCTGGGGAGGTAACGGCGGTGCCGGAAAAGCCTCATATATCAGCAGCGGCGTCGTTTTGTGCAAATAGATCGAAGAAGCTTGTGGATTTAGGTAGAGTTGATCGCCGCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

305

Amino Acids

33.56

Weight (kDa)

10.29

Isoelectric Point (pI)

78.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44600 AT3G60200
fragaria_vesca FvH4_7g08720
malus_domestica MD07G1088100.v1.1
prunus_persica Prupe.2G114900_v2.0.a1
pyrus_communis pycom02g19430 pycom07g07070
rosa_laevigata RLG00000028945 RLG00000030787
rosa_multiflora Rmu_ssc0000434.1_g000045
rosa_roxburghii Rroxscaffold_4G00310220
rosa_rugosa Rorug01G0169900
rosa_samantha Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana Rw1G015380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 823
AccI GTMKAC 2 cut(s) 505, 562
AccII CGCG 3 cut(s) 440, 530, 559
AclWI GGATC 2 cut(s) 227, 488
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 2 cut(s) 213, 854
AdeI CACNNNGTG 1 cut(s) 531
AflIII ACRYGT 1 cut(s) 438
AgeI ACCGGT 1 cut(s) 500
AhdI GACNNNNNGTC 1 cut(s) 20
AluBI AGCT 3 cut(s) 377, 749, 883
AluI AGCT 3 cut(s) 377, 749, 883
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 2 cut(s) 227, 488
ApeKI GCWGC 4 cut(s) 33, 36, 554, 848
AsiGI ACCGGT 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 368
AspLEI GCGC 2 cut(s) 53, 559
AsuC2I CCSGG 1 cut(s) 672
AsuHPI GGTGA 2 cut(s) 585, 754
AsuII TTCGAA 1 cut(s) 309
BanI GGYRCC 1 cut(s) 823
BbsI GAAGAC 1 cut(s) 549
BbvI GCAGC 4 cut(s) 45, 48, 541, 860
BccI CCATC 3 cut(s) 685, 712, 796
BceAI ACGGC 5 cut(s) 58, 83, 95, 834, 897
BcgI CGANNNNNNTGC 6 cut(s) 289, 323, 837, 855, 871, 889
BcnI CCSGG 1 cut(s) 672
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 4 cut(s) 354, 378, 420, 750
BfmI CTRYAG 1 cut(s) 580
BglII AGATCT 2 cut(s) 280, 380
BisI GCNGC 9 cut(s) 34, 37, 87, 96, 108, 555, 849, 852, 910
BlsI GCNGC 9 cut(s) 35, 38, 88, 97, 109, 556, 850, 853, 911
Bme1390I CCNGG 1 cut(s) 672
BmeRI GACNNNNNGTC 1 cut(s) 20
BmiI GGNNCC 3 cut(s) 220, 612, 825
BmrFI CCNGG 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 637, 669
Bpu14I TTCGAA 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 672
Bsa29I ATCGAT 1 cut(s) 319
BsaBI GATNNNNATC 2 cut(s) 399, 787
BsaHI GRCGYC 2 cut(s) 213, 854
BsaWI WCCGGW 2 cut(s) 500, 613
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bse118I RCCGGY 2 cut(s) 221, 500
Bse8I GATNNNNATC 2 cut(s) 399, 787
BseCI ATCGAT 1 cut(s) 319
BseGI GGATG 2 cut(s) 151, 723
BseJI GATNNNNATC 2 cut(s) 399, 787
BseMII CTCAG 2 cut(s) 43, 435
BseRI GAGGAG 4 cut(s) 65, 243, 418, 661
BseXI GCAGC 4 cut(s) 45, 48, 541, 860
Bsh1236I CGCG 3 cut(s) 440, 530, 559
Bsh1285I CGRYCG 1 cut(s) 505
BshNI GGYRCC 1 cut(s) 823
BshTI ACCGGT 1 cut(s) 500
BshVI ATCGAT 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 505
BsiSI CCGG 7 cut(s) 216, 222, 501, 614, 656, 671, 827
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 309
Bsp143I GATC 8 cut(s) 25, 232, 280, 320, 380, 480, 872, 904
BspCNI CTCAG 2 cut(s) 42, 436
BspDI ATCGAT 1 cut(s) 319
BspFNI CGCG 3 cut(s) 440, 530, 559
BspLI GGNNCC 3 cut(s) 220, 612, 825
BspPI GGATC 2 cut(s) 227, 488
BspQI GCTCTTC 1 cut(s) 698
BspT104I TTCGAA 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 823
BsrFI RCCGGY 2 cut(s) 221, 500
BssAI RCCGGY 2 cut(s) 221, 500
BssMI GATC 8 cut(s) 25, 232, 280, 320, 380, 480, 872, 904
BssNI GRCGYC 2 cut(s) 213, 854
Bst4CI ACNGT 3 cut(s) 22, 581, 761
Bst6I CTCTTC 2 cut(s) 472, 698
BstACI GRCGYC 2 cut(s) 213, 854
BstBI TTCGAA 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 29, 444
BstF5I GGATG 2 cut(s) 151, 723
BstFNI CGCG 3 cut(s) 440, 530, 559
BstHHI GCGC 2 cut(s) 53, 559
BstKTI GATC 8 cut(s) 28, 235, 283, 323, 383, 483, 875, 907
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 8 cut(s) 25, 232, 280, 320, 380, 480, 872, 904
BstMCI CGRYCG 1 cut(s) 505
BstMWI GCNNNNNNNGC 6 cut(s) 42, 57, 92, 95, 104, 832
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 1 cut(s) 670
BstSFI CTRYAG 1 cut(s) 580
BstUI CGCG 3 cut(s) 440, 530, 559
BstV1I GCAGC 4 cut(s) 45, 48, 541, 860
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 4 cut(s) 232, 280, 380, 480
BstYI RGATCY 4 cut(s) 232, 280, 380, 480
Bsu15I ATCGAT 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 704
BtsCI GGATG 2 cut(s) 151, 723
CfoI GCGC 2 cut(s) 53, 559
Cfr10I RCCGGY 2 cut(s) 221, 500
ClaI ATCGAT 1 cut(s) 319
CseI GACGC 4 cut(s) 221, 429, 446, 843
CspAI ACCGGT 1 cut(s) 500
CviAII CATG 4 cut(s) 297, 432, 477, 709
CviJI RGCY 7 cut(s) 107, 221, 377, 722, 749, 835, 883
CviKI_1 RGCY 7 cut(s) 107, 221, 377, 722, 749, 835, 883
DdeI CTNAG 2 cut(s) 29, 444
DpnI GATC 8 cut(s) 27, 234, 282, 322, 382, 482, 874, 906
DpnII GATC 8 cut(s) 25, 232, 280, 320, 380, 480, 872, 904
DraI TTTAAA 1 cut(s) 769
DraIII CACNNNGTG 1 cut(s) 531
DriI GACNNNNNGTC 1 cut(s) 20
Eam1104I CTCTTC 2 cut(s) 472, 698
Eam1105I GACNNNNNGTC 1 cut(s) 20
EarI CTCTTC 2 cut(s) 472, 698
EciI GGCGGA 2 cut(s) 82, 641
Eco57I CTGAAG 1 cut(s) 405
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 4 cut(s) 300, 435, 480, 712
FaiI YATR 8 cut(s) 298, 433, 478, 575, 577, 710, 840, 842
FatI CATG 4 cut(s) 296, 431, 476, 708
FblI GTMKAC 2 cut(s) 505, 562
Fnu4HI GCNGC 9 cut(s) 34, 37, 87, 96, 108, 555, 849, 852, 910
FokI GGATG 2 cut(s) 138, 730
Fsp4HI GCNGC 9 cut(s) 34, 37, 87, 96, 108, 555, 849, 852, 910
FspBI CTAG 4 cut(s) 354, 378, 420, 750
GlaI GCGC 2 cut(s) 52, 558
GluI GCNGC 9 cut(s) 34, 37, 87, 96, 108, 555, 849, 852, 910
HapII CCGG 7 cut(s) 216, 222, 501, 614, 656, 671, 827
HgaI GACGC 4 cut(s) 221, 429, 446, 843
HhaI GCGC 2 cut(s) 53, 559
Hin1I GRCGYC 2 cut(s) 213, 854
Hin1II CATG 4 cut(s) 300, 435, 480, 712
Hin6I GCGC 2 cut(s) 51, 557
HinP1I GCGC 2 cut(s) 51, 557
HincII GTYRAC 1 cut(s) 506
HindII GTYRAC 1 cut(s) 506
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 9 cut(s) 258, 311, 316, 357, 364, 423, 490, 629, 733
HpaII CCGG 7 cut(s) 216, 222, 501, 614, 656, 671, 827
HphI GGTGA 2 cut(s) 585, 754
Hpy166II GTNNAC 3 cut(s) 68, 506, 563
Hpy188I TCNGA 7 cut(s) 211, 255, 290, 374, 385, 445, 793
Hpy188III TCNNGA 3 cut(s) 354, 361, 484
Hpy8I GTNNAC 3 cut(s) 68, 506, 563
Hpy99I CGWCG 8 cut(s) 26, 215, 290, 440, 490, 510, 664, 859
HpyAV CCTTC 1 cut(s) 669
HpyCH4III ACNGT 3 cut(s) 22, 581, 761
HpyCH4IV ACGT 6 cut(s) 70, 192, 472, 508, 546, 571
HpyCH4V TGCA 2 cut(s) 300, 866
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 57, 92, 95, 104, 832
HpyF3I CTNAG 2 cut(s) 29, 444
HpySE526I ACGT 6 cut(s) 70, 192, 472, 508, 546, 571
Hsp92I GRCGYC 2 cut(s) 213, 854
Hsp92II CATG 4 cut(s) 300, 435, 480, 712
HspAI GCGC 2 cut(s) 51, 557
Kzo9I GATC 8 cut(s) 25, 232, 280, 320, 380, 480, 872, 904
LguI GCTCTTC 1 cut(s) 698
LmnI GCTCC 2 cut(s) 218, 616
LpnPI CCDG 9 cut(s) 229, 235, 514, 609, 627, 669, 684, 792, 840
Lsp1109I GCAGC 4 cut(s) 45, 48, 541, 860
MaeI CTAG 4 cut(s) 354, 378, 420, 750
MaeII ACGT 6 cut(s) 70, 192, 472, 508, 546, 571
MaeIII GTNAC 4 cut(s) 193, 533, 591, 814
MalI GATC 8 cut(s) 27, 234, 282, 322, 382, 482, 874, 906
MboI GATC 8 cut(s) 25, 232, 280, 320, 380, 480, 872, 904
MflI RGATCY 4 cut(s) 232, 280, 380, 480
MluCI AATT 2 cut(s) 641, 802
MluI ACGCGT 1 cut(s) 438
MlyI GAGTC 1 cut(s) 742
MmeI TCCRAC 3 cut(s) 234, 268, 435
MroXI GAANNNNTTC 1 cut(s) 368
MseI TTAA 1 cut(s) 768
MslI CAYNNNNRTG 1 cut(s) 475
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 7 cut(s) 216, 222, 501, 614, 656, 671, 827
MspR9I CCNGG 1 cut(s) 672
MssI GTTTAAAC 1 cut(s) 769
MvnI CGCG 3 cut(s) 440, 530, 559
MwoI GCNNNNNNNGC 6 cut(s) 42, 57, 92, 95, 104, 832
NciI CCSGG 1 cut(s) 672
NdeII GATC 8 cut(s) 25, 232, 280, 320, 380, 480, 872, 904
NlaIII CATG 4 cut(s) 300, 435, 480, 712
NlaIV GGNNCC 3 cut(s) 220, 612, 825
NmuCI GTSAC 1 cut(s) 591
NspI RCATGY 1 cut(s) 712
NspV TTCGAA 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 698
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 8 cut(s) 258, 311, 316, 357, 364, 423, 490, 629
PfoI TCCNGGA 1 cut(s) 670
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 9 cut(s) 35, 38, 88, 97, 109, 556, 850, 853, 911
PleI GAGTC 1 cut(s) 741
PmeI GTTTAAAC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 741
PspN4I GGNNCC 3 cut(s) 220, 612, 825
PsuI RGATCY 4 cut(s) 232, 280, 380, 480
RseI CAYNNNNRTG 1 cut(s) 475
SalI GTCGAC 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 698
SaqAI TTAA 1 cut(s) 768
SatI GCNGC 9 cut(s) 34, 37, 87, 96, 108, 555, 849, 852, 910
Sau3AI GATC 8 cut(s) 25, 232, 280, 320, 380, 480, 872, 904
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 1 cut(s) 672
SfcI CTRYAG 1 cut(s) 580
SfuI TTCGAA 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 475
Sse9I AATT 2 cut(s) 641, 802
SspMI CTAG 4 cut(s) 354, 378, 420, 750
StyD4I CCNGG 1 cut(s) 670
TaaI ACNGT 3 cut(s) 22, 581, 761
TaiI ACGT 6 cut(s) 73, 195, 475, 511, 549, 574
TasI AATT 2 cut(s) 641, 802
TauI GCSGC 5 cut(s) 89, 98, 110, 854, 912
TfiI GAWTC 8 cut(s) 258, 311, 316, 357, 364, 423, 490, 629
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TseFI GTSAC 1 cut(s) 591
TseI GCWGC 4 cut(s) 33, 36, 554, 848
Tsp45I GTSAC 1 cut(s) 591
TspDTI ATGAA 4 cut(s) 250, 285, 441, 465
TspGWI ACGGA 5 cut(s) 53, 623, 726, 753, 787
XbaI TCTAGA 1 cut(s) 353
XceI RCATGY 1 cut(s) 712
XmiI GTMKAC 2 cut(s) 505, 562
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 4 cut(s) 354, 378, 420, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.