Rh1DG185200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014413
Physical Location & Seq
Forward (+)
37324432 .. 37326924
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG185200.1

Sequence Viewer

Length: 993 bp
ATGAGGTGCAAGAAGCACGCCGCCGACCTCACAAGCGCCGTCGGCGTCTGCGCCTCTTGTCTCCGGGAACGACTGACCGCCATCATCGAGGCCCAGACCCGAGCCCAGGCCCAATTACAACTCCAGGCTCAGCTCTCCCGCCTCCACTCCCGCAGCAACGGCGTCGCTCCCGAAGAACCCCTCAAGTCCGACCCCAACCCCCCGCCGCTCATCTTCCCCCGCTCCGTCTCCCCCTACGTTTCTCGCCGCAAATCCGACGACTCCGCCTGGCCGCACCACCACAATCGCTCCGATCACGGTCACGACCACGACCACAACCACCAGCGCCATCATATTCGCTTCTACAGTACGCCCCAGGTGGGGCCTACCTACGACGGAGGAGCCGCCACTATCGGAGGCTCGTACAGGAAGAGCAAGCCCAAGTTTTCGCTCCTGACGAGTCTGTTCCGGTCCAGATCCGACAAGTTCTGGACGGATCCTAGGGTTTCGTCGCGGGACTCGACTTCGACGTCGGCGTCGCCGTCGTGGTTCTGGACGATCTTCGCCGGGAAAAGAGGGAAGCAATCGAAGCAATTCTACTCCGACGAGTCCACGATCCGAGTGAGATCTCGCCACAGAAGAGCGCGCGGAATGTCGCCGGATTTAACGCACGACGCCGGCGGTGGCGGCTGCGAGGACGACTGCGACCGATCGGCCTCCGGCAGCGGGGACTCATCGACGCCGGATTGGAAGAGGACTCCGGTGCAGGCCACGCCGTCGCGGCGGACGCGTTCGGGTCCGGTTAAGAATGTGTCGGGTCTGACGTTCTGCCTGAGCCCGCTGGTTCGGGCCAGCCCGAACCCGCACTGGAACCAGAAGTGCATGCAGGGCTTCCCGGCCGAGGTTGGCGAGGTCAGGGTGGCGACGAAGCCACACTTGGCCACAGCGGCGTCGTTTAGCATGAACCGGTCGAGGAAGCTGGCTGATATCGGTAGAGCCACTTCCAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

330

Amino Acids

36.53

Weight (kDa)

10.35

Isoelectric Point (pI)

65.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44600 AT3G60200
fragaria_vesca FvH4_7g08720
malus_domestica MD07G1088100.v1.1
prunus_persica Prupe.2G114900_v2.0.a1
pyrus_communis pycom02g19430 pycom07g07070
rosa_laevigata RLG00000028945 RLG00000030787
rosa_multiflora Rmu_ssc0000434.1_g000045
rosa_roxburghii Rroxscaffold_4G00310220
rosa_rugosa Rorug01G0169900
rosa_samantha Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana Rw1G015380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 508, 514
AatII GACGTC 1 cut(s) 512
AccBSI CCGCTC 2 cut(s) 208, 222
AccII CGCG 5 cut(s) 493, 625, 627, 760, 769
AclWI GGATC 4 cut(s) 450, 470, 483, 589
AcoI YGGCCR 3 cut(s) 269, 876, 918
AcyI GRCGYC 7 cut(s) 45, 162, 509, 515, 654, 719, 929
AfaI GTAC 2 cut(s) 349, 404
AfiI CCNNNNNNNGG 5 cut(s) 106, 359, 360, 705, 880
AflIII ACRYGT 1 cut(s) 767
AgeI ACCGGT 1 cut(s) 945
AjnI CCWGG 4 cut(s) 105, 123, 266, 354
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AluBI AGCT 2 cut(s) 133, 958
AluI AGCT 2 cut(s) 133, 958
Alw26I GTCTC 2 cut(s) 65, 232
AlwI GGATC 4 cut(s) 450, 470, 483, 589
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 9 cut(s) 90, 108, 269, 362, 693, 747, 828, 876, 918
ApeKI GCWGC 3 cut(s) 153, 669, 702
AsiGI ACCGGT 1 cut(s) 945
Asp700I GAANNNNTTC 1 cut(s) 572
AspA2I CCTAGG 1 cut(s) 479
AspLEI GCGC 5 cut(s) 38, 53, 327, 625, 627
AspS9I GGNCC 6 cut(s) 91, 109, 362, 450, 776, 828
AsuC2I CCSGG 3 cut(s) 65, 547, 875
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 2 cut(s) 450, 776
AvrII CCTAGG 1 cut(s) 479
BalI TGGCCA 1 cut(s) 920
BamHI GGATCC 1 cut(s) 475
BanII GRGCYC 2 cut(s) 106, 818
BarI GAAGNNNNNNTAC 3 cut(s) 560, 592, 964
BbvI GCAGC 3 cut(s) 165, 656, 714
BccI CCATC 2 cut(s) 89, 336
BceAI ACGGC 4 cut(s) 23, 175, 505, 739
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 4 cut(s) 107, 125, 268, 356
BcnI CCSGG 3 cut(s) 65, 547, 875
BcoDI GTCTC 2 cut(s) 65, 232
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 343
BfoI RGCGCY 2 cut(s) 39, 328
BglI GCCNNNNNGGC 2 cut(s) 760, 926
BglII AGATCT 1 cut(s) 605
BlnI CCTAGG 1 cut(s) 479
BlpI GCTNAGC 1 cut(s) 129
Bme1390I CCNGG 7 cut(s) 65, 107, 125, 268, 356, 547, 875
Bme18I GGWCC 2 cut(s) 450, 776
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 6 cut(s) 91, 109, 362, 450, 776, 828
BmiI GGNNCC 5 cut(s) 363, 382, 477, 777, 851
BmrFI CCNGG 7 cut(s) 65, 107, 125, 268, 356, 547, 875
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 812
Bpu1102I GCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 3 cut(s) 65, 547, 875
BsaHI GRCGYC 7 cut(s) 45, 162, 509, 515, 654, 719, 929
BsaJI CCNNGG 4 cut(s) 105, 354, 479, 879
BsaWI WCCGGW 4 cut(s) 447, 739, 778, 945
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 359, 360, 705, 880
Bse118I RCCGGY 2 cut(s) 656, 945
Bse1I ACTGG 1 cut(s) 851
BseBI CCWGG 4 cut(s) 107, 125, 268, 356
BseDI CCNNGG 4 cut(s) 105, 354, 479, 879
BseLI CCNNNNNNNGG 5 cut(s) 106, 359, 360, 705, 880
BseMII CTCAG 2 cut(s) 143, 803
BseNI ACTGG 1 cut(s) 851
BsePI GCGCGC 1 cut(s) 623
BseRI GAGGAG 1 cut(s) 393
BseX3I CGGCCG 1 cut(s) 876
BseXI GCAGC 3 cut(s) 165, 656, 714
BsgI GTGCAG 1 cut(s) 764
Bsh1236I CGCG 5 cut(s) 493, 625, 627, 760, 769
Bsh1285I CGRYCG 4 cut(s) 688, 692, 879, 950
BshFI GGCC 9 cut(s) 92, 110, 271, 364, 695, 749, 830, 878, 920
BshTI ACCGGT 1 cut(s) 945
BsiEI CGRYCG 4 cut(s) 688, 692, 879, 950
BsiHKCI CYCGRG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 509, 722
BslI CCNNNNNNNGG 5 cut(s) 106, 359, 360, 705, 880
BsmAI GTCTC 2 cut(s) 65, 232
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 509, 722
BsnI GGCC 9 cut(s) 92, 110, 271, 364, 695, 749, 830, 878, 920
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 2 cut(s) 106, 818
Bsp143I GATC 7 cut(s) 292, 455, 475, 537, 594, 605, 689
Bsp1720I GCTNAGC 1 cut(s) 129
BspANI GGCC 9 cut(s) 92, 110, 271, 364, 695, 749, 830, 878, 920
BspCNI CTCAG 2 cut(s) 142, 804
BspFNI CGCG 5 cut(s) 493, 625, 627, 760, 769
BspLI GGNNCC 5 cut(s) 363, 382, 477, 777, 851
BspPI GGATC 4 cut(s) 450, 470, 483, 589
BspQI GCTCTTC 2 cut(s) 404, 613
BsrBI CCGCTC 2 cut(s) 208, 222
BsrFI RCCGGY 2 cut(s) 656, 945
BsrI ACTGG 1 cut(s) 851
BssAI RCCGGY 2 cut(s) 656, 945
BssECI CCNNGG 4 cut(s) 105, 354, 479, 879
BssHII GCGCGC 1 cut(s) 623
BssMI GATC 7 cut(s) 292, 455, 475, 537, 594, 605, 689
BssNI GRCGYC 7 cut(s) 45, 162, 509, 515, 654, 719, 929
BssT1I CCWWGG 1 cut(s) 479
Bst2UI CCWGG 4 cut(s) 107, 125, 268, 356
Bst4CI ACNGT 3 cut(s) 299, 347, 989
Bst6I CTCTTC 3 cut(s) 404, 613, 725
BstACI GRCGYC 7 cut(s) 45, 162, 509, 515, 654, 719, 929
BstC8I GCNNGC 9 cut(s) 18, 416, 625, 658, 747, 818, 832, 863, 960
BstDEI CTNAG 2 cut(s) 129, 812
BstFNI CGCG 5 cut(s) 493, 625, 627, 760, 769
BstH2I RGCGCY 2 cut(s) 39, 328
BstHHI GCGC 5 cut(s) 38, 53, 327, 625, 627
BstKTI GATC 7 cut(s) 295, 458, 478, 540, 597, 608, 692
BstMAI GTCTC 2 cut(s) 65, 232
BstMBI GATC 7 cut(s) 292, 455, 475, 537, 594, 605, 689
BstMCI CGRYCG 4 cut(s) 688, 692, 879, 950
BstMWI GCNNNNNNNGC 9 cut(s) 42, 159, 568, 666, 751, 760, 766, 867, 926
BstNI CCWGG 4 cut(s) 107, 125, 268, 356
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 7 cut(s) 63, 105, 123, 266, 354, 545, 873
BstSFI CTRYAG 1 cut(s) 343
BstUI CGCG 5 cut(s) 493, 625, 627, 760, 769
BstV1I GCAGC 3 cut(s) 165, 656, 714
BstX2I RGATCY 3 cut(s) 455, 475, 605
BstYI RGATCY 3 cut(s) 455, 475, 605
BstZI CGGCCG 1 cut(s) 876
BsuRI GGCC 9 cut(s) 92, 110, 271, 364, 695, 749, 830, 878, 920
BtsIMutI CAGTG 1 cut(s) 844
Cac8I GCNNGC 9 cut(s) 18, 416, 625, 658, 747, 818, 832, 863, 960
CfoI GCGC 5 cut(s) 38, 53, 327, 625, 627
Cfr10I RCCGGY 2 cut(s) 656, 945
Cfr13I GGNCC 6 cut(s) 91, 109, 362, 450, 776, 828
CseI GACGC 7 cut(s) 34, 151, 504, 662, 727, 775, 918
Csp6I GTAC 2 cut(s) 348, 403
CspAI ACCGGT 1 cut(s) 945
CviAII CATG 2 cut(s) 862, 940
CviQI GTAC 2 cut(s) 348, 403
DdeI CTNAG 2 cut(s) 129, 812
DpnI GATC 7 cut(s) 294, 457, 477, 539, 596, 607, 691
DpnII GATC 7 cut(s) 292, 455, 475, 537, 594, 605, 689
DrdI GACNNNNNNGTC 2 cut(s) 508, 514
DseDI GACNNNNNNGTC 2 cut(s) 508, 514
EaeI YGGCCR 3 cut(s) 269, 876, 918
EagI CGGCCG 1 cut(s) 876
Eam1104I CTCTTC 3 cut(s) 404, 613, 725
EarI CTCTTC 3 cut(s) 404, 613, 725
EciI GGCGGA 2 cut(s) 253, 778
EclXI CGGCCG 1 cut(s) 876
Eco130I CCWWGG 1 cut(s) 479
Eco24I GRGCYC 2 cut(s) 106, 818
Eco32I GATATC 1 cut(s) 967
Eco47I GGWCC 2 cut(s) 450, 776
Eco52I CGGCCG 1 cut(s) 876
Eco88I CYCGRG 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 4 cut(s) 105, 123, 266, 354
EcoRV GATATC 1 cut(s) 967
EcoT14I CCWWGG 1 cut(s) 479
EcoT38I GRGCYC 2 cut(s) 106, 818
ErhI CCWWGG 1 cut(s) 479
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 2 cut(s) 865, 943
FaiI YATR 3 cut(s) 333, 863, 941
FalI AAGNNNNNCTT 2 cut(s) 899, 931
FaqI GGGAC 2 cut(s) 509, 722
FatI CATG 2 cut(s) 861, 939
FauI CCCGC 8 cut(s) 146, 158, 210, 227, 486, 698, 825, 849
FriOI GRGCYC 2 cut(s) 106, 818
FspBI CTAG 1 cut(s) 480
GlaI GCGC 5 cut(s) 37, 52, 326, 624, 626
GsuI CTGGAG 1 cut(s) 107
HaeII RGCGCY 2 cut(s) 39, 328
HaeIII GGCC 9 cut(s) 92, 110, 271, 364, 695, 749, 830, 878, 920
HgaI GACGC 7 cut(s) 34, 151, 504, 662, 727, 775, 918
HhaI GCGC 5 cut(s) 38, 53, 327, 625, 627
Hin1I GRCGYC 7 cut(s) 45, 162, 509, 515, 654, 719, 929
Hin1II CATG 2 cut(s) 865, 943
Hin6I GCGC 5 cut(s) 36, 51, 325, 623, 625
HinP1I GCGC 5 cut(s) 36, 51, 325, 623, 625
HinfI GANTC 6 cut(s) 260, 439, 497, 587, 710, 736
Hpy166II GTNNAC 1 cut(s) 591
Hpy188I TCNGA 8 cut(s) 190, 256, 292, 395, 460, 583, 599, 801
Hpy188III TCNNGA 6 cut(s) 170, 302, 433, 453, 469, 532
Hpy8I GTNNAC 1 cut(s) 591
HpyCH4III ACNGT 3 cut(s) 299, 347, 989
HpyCH4IV ACGT 3 cut(s) 237, 509, 803
HpyCH4V TGCA 4 cut(s) 9, 745, 861, 865
HpyF10VI GCNNNNNNNGC 9 cut(s) 42, 159, 568, 666, 751, 760, 766, 867, 926
HpyF3I CTNAG 2 cut(s) 129, 812
HpySE526I ACGT 3 cut(s) 237, 509, 803
Hsp92I GRCGYC 7 cut(s) 45, 162, 509, 515, 654, 719, 929
Hsp92II CATG 2 cut(s) 865, 943
HspAI GCGC 5 cut(s) 36, 51, 325, 623, 625
KroI GCCGGC 1 cut(s) 656
KroNI GCCGGC 1 cut(s) 658
Kzo9I GATC 7 cut(s) 292, 455, 475, 537, 594, 605, 689
LguI GCTCTTC 2 cut(s) 404, 613
LmnI GCTCC 5 cut(s) 172, 227, 293, 380, 435
Lsp1109I GCAGC 3 cut(s) 165, 656, 714
MaeI CTAG 1 cut(s) 480
MaeII ACGT 3 cut(s) 237, 509, 803
MaeIII GTNAC 1 cut(s) 299
MalI GATC 7 cut(s) 294, 457, 477, 539, 596, 607, 691
MbiI CCGCTC 2 cut(s) 208, 222
MboI GATC 7 cut(s) 292, 455, 475, 537, 594, 605, 689
MboII GAAGA 6 cut(s) 185, 205, 421, 532, 630, 742
MflI RGATCY 3 cut(s) 455, 475, 605
MhlI GDGCHC 2 cut(s) 106, 818
MlsI TGGCCA 1 cut(s) 920
MluCI AATT 2 cut(s) 113, 572
MluI ACGCGT 1 cut(s) 767
MluNI TGGCCA 1 cut(s) 920
MlyI GAGTC 6 cut(s) 254, 448, 491, 596, 704, 730
MmeI TCCRAC 4 cut(s) 213, 279, 483, 606
Mox20I TGGCCA 1 cut(s) 920
MreI CGCCGGCG 1 cut(s) 656
MroNI GCCGGC 1 cut(s) 656
MroXI GAANNNNTTC 1 cut(s) 572
MscI TGGCCA 1 cut(s) 920
MseI TTAA 2 cut(s) 644, 783
Msp20I TGGCCA 1 cut(s) 920
MspA1I CMGCKG 3 cut(s) 705, 820, 926
MspR9I CCNGG 7 cut(s) 65, 107, 125, 268, 356, 547, 875
MvaI CCWGG 4 cut(s) 107, 125, 268, 356
MvnI CGCG 5 cut(s) 493, 625, 627, 760, 769
MwoI GCNNNNNNNGC 9 cut(s) 42, 159, 568, 666, 751, 760, 766, 867, 926
NaeI GCCGGC 1 cut(s) 658
NciI CCSGG 3 cut(s) 65, 547, 875
NdeII GATC 7 cut(s) 292, 455, 475, 537, 594, 605, 689
NgoMIV GCCGGC 1 cut(s) 656
NlaIII CATG 2 cut(s) 865, 943
NlaIV GGNNCC 5 cut(s) 363, 382, 477, 777, 851
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 865
PaeI GCATGC 1 cut(s) 865
PauI GCGCGC 1 cut(s) 623
PciSI GCTCTTC 2 cut(s) 404, 613
PcsI WCGNNNNNNNCGW 6 cut(s) 434, 497, 506, 512, 518, 800
PdiI GCCGGC 1 cut(s) 658
PdmI GAANNNNTTC 1 cut(s) 572
PfoI TCCNGGA 1 cut(s) 63
PinAI ACCGGT 1 cut(s) 945
Ple19I CGATCG 1 cut(s) 692
PleI GAGTC 6 cut(s) 254, 447, 491, 595, 704, 730
PpsI GAGTC 6 cut(s) 254, 447, 491, 595, 704, 730
Psp6I CCWGG 4 cut(s) 105, 123, 266, 354
PspGI CCWGG 4 cut(s) 105, 123, 266, 354
PspN4I GGNNCC 5 cut(s) 363, 382, 477, 777, 851
PspPI GGNCC 6 cut(s) 91, 109, 362, 450, 776, 828
PsuI RGATCY 3 cut(s) 455, 475, 605
PteI GCGCGC 1 cut(s) 623
PvuI CGATCG 1 cut(s) 692
RsaI GTAC 2 cut(s) 349, 404
RsaNI GTAC 2 cut(s) 348, 403
SapI GCTCTTC 2 cut(s) 404, 613
SaqAI TTAA 2 cut(s) 644, 783
Sau3AI GATC 7 cut(s) 292, 455, 475, 537, 594, 605, 689
Sau96I GGNCC 6 cut(s) 91, 109, 362, 450, 776, 828
SchI GAGTC 6 cut(s) 254, 448, 491, 596, 704, 730
ScrFI CCNGG 7 cut(s) 65, 107, 125, 268, 356, 547, 875
SduI GDGCHC 2 cut(s) 106, 818
SfcI CTRYAG 1 cut(s) 343
SgrAI CRCCGGYG 1 cut(s) 656
SinI GGWCC 2 cut(s) 450, 776
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SphI GCATGC 1 cut(s) 865
Sse9I AATT 2 cut(s) 113, 572
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 7 cut(s) 63, 105, 123, 266, 354, 545, 873
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 3 cut(s) 299, 347, 989
TaiI ACGT 3 cut(s) 240, 512, 806
TaqI TCGA 6 cut(s) 87, 500, 506, 566, 716, 950
TaqII GACCGA 1 cut(s) 702
TasI AATT 2 cut(s) 113, 572
TauI GCSGC 8 cut(s) 23, 208, 249, 274, 386, 669, 763, 929
Tru1I TTAA 2 cut(s) 644, 783
Tru9I TTAA 2 cut(s) 644, 783
TscAI CASTG 1 cut(s) 851
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 3 cut(s) 153, 669, 702
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 956
TspGWI ACGGA 3 cut(s) 214, 390, 488
TspRI CASTG 1 cut(s) 851
VpaK11BI GGWCC 2 cut(s) 450, 776
XceI RCATGY 1 cut(s) 865
XmaJI CCTAGG 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 1 cut(s) 480
ZraI GACGTC 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.