FvH4_7g08720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014413
Physical Location & Seq
Forward (+)
8539304 .. 8541033
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08720.t1

Sequence Viewer

Length: 990 bp
ATGAGCTGCAAGAAGCACGCCGCCGACCTCACTAGCGCCGTCGGCGTCTGCGCCTCTTGTCTCCGTGAACGACTGACAACCATCATCGAGACCCAGACCCGAGCCCAGGCCCAGTTACAAATCCAGGCGCAGCTCTCCCGCCTCCACTCCCGCAACAACGGCGTCGCCCCGGAAGAACCGCAAAAGTCCGACCCGAACCCGCCACCGGCGCTCATCTTCCCCCGCTCCGTCTCCCCTTACGTTTCTCGCCGTAAATCCGACCAGCACAACCGCTCCGATCACGATCACGACCACGACCACGACCACAGCCACCACCAGCGCCACCATATCCGGTTCTACAGTACGCCCCAGGTGGGGCCCACCTACGACCGGGGAGGCTCCGCCGCTATCGGAGGCTCGTACAGGAAGAGCAAGCCGAGGTTTTCGCTCCTGACGAGCCTGTTCCGGTCCAGATCCGACAAGTTCTGGACGGATCCCAGGGTCTCGTCGCGGGACGCGATCGCGACGTCGGCGTCCTCGCCGTCGTGGTTCTCGGCCATCTTCGCCGGCAAAAGAGGGAAGAAATCGAAGCAATGCTTCGCCGACGAGTCCACGGTGCGCGTGAGATCTCGCCACAGAAGAGCGCGCGGAATGTCGCCGGATTTCACGCACGACGGCTGCGAGGACGATGGCGAACCGTCGGCGTCGGGAAGCGGAGACTCGTCGACGCCGGATTGGAAGCGGACTCCGGTTCATGCGACGCCGTCGAGGCGGGCGCGTTCGGGTCCGGTAAAGAACGTGTCGGGTCTGACGTTCTGCCTGAGCCCGCTGGTTCGGGCCAGCCCGAACCCGCACTGGAACCAGAAGGGCATGCAGGGGTTTCCGCCGGACCTTGGGATCACCGGCGAGATCAGGGTGGCGACGAAGCCGCACTTGTCTTCTGCGGCGTCGTTTAGCATGAACCGGTCGAGGAAGCTGGCCGATTTCGGTAGAGCCACTTCCAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

330

Amino Acids

36.35

Weight (kDa)

10.41

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44600 AT3G60200
fragaria_vesca FvH4_7g08720
malus_domestica MD07G1088100.v1.1
prunus_persica Prupe.2G114900_v2.0.a1
pyrus_communis pycom02g19430 pycom07g07070
rosa_laevigata RLG00000028945 RLG00000030787
rosa_multiflora Rmu_ssc0000434.1_g000045
rosa_roxburghii Rroxscaffold_4G00310220
rosa_rugosa Rorug01G0169900
rosa_samantha Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana Rw1G015380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 511
AatII GACGTC 1 cut(s) 509
AccBSI CCGCTC 2 cut(s) 225, 273
AccI GTMKAC 1 cut(s) 704
AccII CGCG 7 cut(s) 490, 497, 503, 600, 625, 627, 757
AclWI GGATC 4 cut(s) 447, 467, 480, 884
AcoI YGGCCR 2 cut(s) 534, 957
AcyI GRCGYC 8 cut(s) 45, 162, 506, 512, 683, 707, 740, 926
AfaI GTAC 2 cut(s) 343, 401
AfiI CCNNNNNNNGG 6 cut(s) 106, 205, 353, 354, 369, 872
AflIII ACRYGT 1 cut(s) 777
AgeI ACCGGT 1 cut(s) 942
AjnI CCWGG 4 cut(s) 105, 123, 348, 476
AluBI AGCT 3 cut(s) 6, 133, 955
AluI AGCT 3 cut(s) 6, 133, 955
Alw26I GTCTC 5 cut(s) 65, 83, 235, 487, 690
AlwI GGATC 4 cut(s) 447, 467, 480, 884
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 5 cut(s) 108, 356, 534, 816, 957
ApaI GGGCCC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 6, 130, 657
AsiGI ACCGGT 1 cut(s) 942
AsiSI GCGATCGC 1 cut(s) 501
AspLEI GCGC 9 cut(s) 38, 53, 130, 211, 321, 600, 625, 627, 757
AspS9I GGNCC 7 cut(s) 109, 356, 357, 447, 764, 816, 868
AsuC2I CCSGG 2 cut(s) 170, 371
AsuHPI GGTGA 1 cut(s) 871
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 3 cut(s) 447, 764, 868
BaeGI GKGCMC 1 cut(s) 360
BamHI GGATCC 1 cut(s) 472
BanII GRGCYC 3 cut(s) 106, 360, 806
BarI GAAGNNNNNNTAC 1 cut(s) 961
BbsI GAAGAC 1 cut(s) 909
BbvI GCAGC 2 cut(s) 142, 644
BccI CCATC 3 cut(s) 89, 545, 662
BceAI ACGGC 6 cut(s) 23, 175, 234, 505, 670, 727
BciT130I CCWGG 4 cut(s) 107, 125, 350, 478
BcnI CCSGG 2 cut(s) 170, 371
BcoDI GTCTC 5 cut(s) 65, 83, 235, 487, 690
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 337
BfoI RGCGCY 3 cut(s) 39, 212, 322
BglI GCCNNNNNGGC 1 cut(s) 748
BglII AGATCT 1 cut(s) 605
BisI GCNGC 7 cut(s) 7, 21, 131, 384, 658, 908, 924
BlsI GCNGC 7 cut(s) 8, 22, 132, 385, 659, 909, 925
Bme1390I CCNGG 6 cut(s) 107, 125, 170, 350, 371, 478
Bme18I GGWCC 3 cut(s) 447, 764, 868
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 7 cut(s) 109, 356, 357, 447, 764, 816, 868
BmiI GGNNCC 6 cut(s) 357, 358, 379, 474, 765, 839
BmrFI CCNGG 6 cut(s) 107, 125, 170, 350, 371, 478
BmrI ACTGGG 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 909
Bpu10I CCTNAGC 1 cut(s) 800
BpuMI CCSGG 2 cut(s) 170, 371
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 8 cut(s) 45, 162, 506, 512, 683, 707, 740, 926
BsaI GGTCTC 2 cut(s) 83, 487
BsaJI CCNNGG 9 cut(s) 105, 168, 348, 370, 416, 476, 477, 591, 871
BsaWI WCCGGW 5 cut(s) 330, 444, 727, 766, 942
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 6 cut(s) 106, 205, 353, 354, 369, 872
Bse118I RCCGGY 4 cut(s) 205, 545, 881, 942
Bse1I ACTGG 2 cut(s) 112, 839
Bse3DI GCAATG 1 cut(s) 578
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 4 cut(s) 107, 125, 350, 478
BseDI CCNNGG 9 cut(s) 105, 168, 348, 370, 416, 476, 477, 591, 871
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 6 cut(s) 106, 205, 353, 354, 369, 872
BseMI GCAATG 1 cut(s) 578
BseMII CTCAG 1 cut(s) 791
BseNI ACTGG 2 cut(s) 112, 839
BsePI GCGCGC 1 cut(s) 623
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 2 cut(s) 142, 644
Bsh1236I CGCG 7 cut(s) 490, 497, 503, 600, 625, 627, 757
Bsh1285I CGRYCG 3 cut(s) 370, 501, 947
BshFI GGCC 5 cut(s) 110, 358, 536, 818, 959
BshTI ACCGGT 1 cut(s) 942
BsiEI CGRYCG 3 cut(s) 370, 501, 947
BsiHKCI CYCGRG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 6 cut(s) 106, 205, 353, 354, 369, 872
BsmAI GTCTC 5 cut(s) 65, 83, 235, 487, 690
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 5 cut(s) 110, 358, 536, 818, 959
Bso31I GGTCTC 2 cut(s) 83, 487
BsoBI CYCGRG 1 cut(s) 99
Bsp120I GGGCCC 1 cut(s) 356
Bsp1286I GDGCHC 3 cut(s) 106, 360, 806
Bsp143I GATC 8 cut(s) 277, 283, 452, 472, 498, 605, 876, 888
Bsp68I TCGCGA 1 cut(s) 503
BspANI GGCC 5 cut(s) 110, 358, 536, 818, 959
BspCNI CTCAG 1 cut(s) 792
BspFNI CGCG 7 cut(s) 490, 497, 503, 600, 625, 627, 757
BspLI GGNNCC 6 cut(s) 357, 358, 379, 474, 765, 839
BspPI GGATC 4 cut(s) 447, 467, 480, 884
BspQI GCTCTTC 2 cut(s) 401, 613
BspTNI GGTCTC 2 cut(s) 83, 487
BsrBI CCGCTC 2 cut(s) 225, 273
BsrDI GCAATG 1 cut(s) 578
BsrFI RCCGGY 4 cut(s) 205, 545, 881, 942
BsrI ACTGG 2 cut(s) 112, 839
BssAI RCCGGY 4 cut(s) 205, 545, 881, 942
BssECI CCNNGG 9 cut(s) 105, 168, 348, 370, 416, 476, 477, 591, 871
BssHII GCGCGC 1 cut(s) 623
BssMI GATC 8 cut(s) 277, 283, 452, 472, 498, 605, 876, 888
BssNI GRCGYC 8 cut(s) 45, 162, 506, 512, 683, 707, 740, 926
BssT1I CCWWGG 1 cut(s) 871
Bst2UI CCWGG 4 cut(s) 107, 125, 350, 478
Bst4CI ACNGT 4 cut(s) 341, 595, 678, 986
Bst6I CTCTTC 2 cut(s) 401, 613
BstACI GRCGYC 8 cut(s) 45, 162, 506, 512, 683, 707, 740, 926
BstC8I GCNNGC 9 cut(s) 18, 413, 547, 625, 753, 806, 820, 851, 957
BstDEI CTNAG 1 cut(s) 800
BstDSI CCRYGG 1 cut(s) 591
BstFNI CGCG 7 cut(s) 490, 497, 503, 600, 625, 627, 757
BstH2I RGCGCY 3 cut(s) 39, 212, 322
BstHHI GCGC 9 cut(s) 38, 53, 130, 211, 321, 600, 625, 627, 757
BstKTI GATC 8 cut(s) 280, 286, 455, 475, 501, 608, 879, 891
BstMAI GTCTC 5 cut(s) 65, 83, 235, 487, 690
BstMBI GATC 8 cut(s) 277, 283, 452, 472, 498, 605, 876, 888
BstMCI CGRYCG 3 cut(s) 370, 501, 947
BstMWI GCNNNNNNNGC 6 cut(s) 42, 159, 208, 509, 542, 748
BstNI CCWGG 4 cut(s) 107, 125, 350, 478
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 6 cut(s) 105, 123, 168, 348, 369, 476
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 7 cut(s) 490, 497, 503, 600, 625, 627, 757
BstV1I GCAGC 2 cut(s) 142, 644
BstV2I GAAGAC 1 cut(s) 909
BstX2I RGATCY 3 cut(s) 452, 472, 605
BstYI RGATCY 3 cut(s) 452, 472, 605
BsuRI GGCC 5 cut(s) 110, 358, 536, 818, 959
BtgI CCRYGG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 832
BtuMI TCGCGA 1 cut(s) 503
Cac8I GCNNGC 9 cut(s) 18, 413, 547, 625, 753, 806, 820, 851, 957
CfoI GCGC 9 cut(s) 38, 53, 130, 211, 321, 600, 625, 627, 757
Cfr10I RCCGGY 4 cut(s) 205, 545, 881, 942
Cfr13I GGNCC 7 cut(s) 109, 356, 357, 447, 764, 816, 868
CseI GACGC 8 cut(s) 34, 151, 501, 503, 672, 715, 748, 915
Csp6I GTAC 2 cut(s) 342, 400
CspAI ACCGGT 1 cut(s) 942
CviAII CATG 3 cut(s) 734, 850, 937
CviQI GTAC 2 cut(s) 342, 400
DdeI CTNAG 1 cut(s) 800
DpnI GATC 8 cut(s) 279, 285, 454, 474, 500, 607, 878, 890
DpnII GATC 8 cut(s) 277, 283, 452, 472, 498, 605, 876, 888
DrdI GACNNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 2 cut(s) 534, 957
Eam1104I CTCTTC 2 cut(s) 401, 613
EarI CTCTTC 2 cut(s) 401, 613
EciI GGCGGA 2 cut(s) 370, 852
Eco130I CCWWGG 1 cut(s) 871
Eco24I GRGCYC 3 cut(s) 106, 360, 806
Eco31I GGTCTC 2 cut(s) 83, 487
Eco47I GGWCC 3 cut(s) 447, 764, 868
Eco88I CYCGRG 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 356
EcoRII CCWGG 4 cut(s) 105, 123, 348, 476
EcoT14I CCWWGG 1 cut(s) 871
EcoT38I GRGCYC 3 cut(s) 106, 360, 806
ErhI CCWWGG 1 cut(s) 871
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 3 cut(s) 737, 853, 940
FaiI YATR 4 cut(s) 327, 735, 851, 938
FalI AAGNNNNNCTT 4 cut(s) 560, 592, 896, 928
FaqI GGGAC 1 cut(s) 506
FatI CATG 3 cut(s) 733, 849, 936
FauI CCCGC 8 cut(s) 146, 158, 207, 230, 483, 744, 813, 837
FblI GTMKAC 1 cut(s) 704
Fnu4HI GCNGC 7 cut(s) 7, 21, 131, 384, 658, 908, 924
FriOI GRGCYC 3 cut(s) 106, 360, 806
Fsp4HI GCNGC 7 cut(s) 7, 21, 131, 384, 658, 908, 924
FspBI CTAG 1 cut(s) 33
GlaI GCGC 9 cut(s) 37, 52, 129, 210, 320, 599, 624, 626, 756
GluI GCNGC 7 cut(s) 7, 21, 131, 384, 658, 908, 924
HaeII RGCGCY 3 cut(s) 39, 212, 322
HaeIII GGCC 5 cut(s) 110, 358, 536, 818, 959
HgaI GACGC 8 cut(s) 34, 151, 501, 503, 672, 715, 748, 915
HhaI GCGC 9 cut(s) 38, 53, 130, 211, 321, 600, 625, 627, 757
Hin1I GRCGYC 8 cut(s) 45, 162, 506, 512, 683, 707, 740, 926
Hin1II CATG 3 cut(s) 737, 853, 940
Hin6I GCGC 9 cut(s) 36, 51, 128, 209, 319, 598, 623, 625, 755
HinP1I GCGC 9 cut(s) 36, 51, 128, 209, 319, 598, 623, 625, 755
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HinfI GANTC 3 cut(s) 587, 698, 724
HphI GGTGA 1 cut(s) 871
Hpy166II GTNNAC 3 cut(s) 68, 591, 705
Hpy188I TCNGA 6 cut(s) 190, 259, 277, 392, 457, 789
Hpy188III TCNNGA 8 cut(s) 88, 281, 287, 430, 450, 466, 502, 687
Hpy8I GTNNAC 3 cut(s) 68, 591, 705
HpyAV CCTTC 1 cut(s) 838
HpyCH4III ACNGT 4 cut(s) 341, 595, 678, 986
HpyCH4IV ACGT 4 cut(s) 240, 506, 777, 791
HpyCH4V TGCA 2 cut(s) 9, 853
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 159, 208, 509, 542, 748
HpyF3I CTNAG 1 cut(s) 800
HpySE526I ACGT 4 cut(s) 240, 506, 777, 791
Hsp92I GRCGYC 8 cut(s) 45, 162, 506, 512, 683, 707, 740, 926
Hsp92II CATG 3 cut(s) 737, 853, 940
HspAI GCGC 9 cut(s) 36, 51, 128, 209, 319, 598, 623, 625, 755
KroI GCCGGC 1 cut(s) 545
KroNI GCCGGC 1 cut(s) 547
Kzo9I GATC 8 cut(s) 277, 283, 452, 472, 498, 605, 876, 888
LguI GCTCTTC 2 cut(s) 401, 613
LmnI GCTCC 4 cut(s) 230, 278, 383, 432
Lsp1109I GCAGC 2 cut(s) 142, 644
MaeI CTAG 1 cut(s) 33
MaeII ACGT 4 cut(s) 240, 506, 777, 791
MaeIII GTNAC 1 cut(s) 114
MalI GATC 8 cut(s) 279, 285, 454, 474, 500, 607, 878, 890
MbiI CCGCTC 2 cut(s) 225, 273
MboI GATC 8 cut(s) 277, 283, 452, 472, 498, 605, 876, 888
MboII GAAGA 7 cut(s) 185, 208, 418, 532, 571, 630, 909
MflI RGATCY 3 cut(s) 452, 472, 605
MhlI GDGCHC 3 cut(s) 106, 360, 806
MlyI GAGTC 3 cut(s) 596, 692, 718
MmeI TCCRAC 3 cut(s) 213, 282, 480
MroNI GCCGGC 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 808
MspR9I CCNGG 6 cut(s) 107, 125, 170, 350, 371, 478
MvaI CCWGG 4 cut(s) 107, 125, 350, 478
MvnI CGCG 7 cut(s) 490, 497, 503, 600, 625, 627, 757
MwoI GCNNNNNNNGC 6 cut(s) 42, 159, 208, 509, 542, 748
NaeI GCCGGC 1 cut(s) 547
NciI CCSGG 2 cut(s) 170, 371
NdeII GATC 8 cut(s) 277, 283, 452, 472, 498, 605, 876, 888
NgoMIV GCCGGC 1 cut(s) 545
NlaIII CATG 3 cut(s) 737, 853, 940
NlaIV GGNNCC 6 cut(s) 357, 358, 379, 474, 765, 839
NmeAIII GCCGAG 2 cut(s) 441, 512
NruI TCGCGA 1 cut(s) 503
NspI RCATGY 1 cut(s) 853
PaeI GCATGC 1 cut(s) 853
PasI CCCWGGG 1 cut(s) 477
PauI GCGCGC 1 cut(s) 623
PciSI GCTCTTC 2 cut(s) 401, 613
PcsI WCGNNNNNNNCGW 4 cut(s) 431, 494, 657, 788
PdiI GCCGGC 1 cut(s) 547
PflFI GACNNNGTC 1 cut(s) 742
PinAI ACCGGT 1 cut(s) 942
PkrI GCNGC 7 cut(s) 8, 22, 132, 385, 659, 909, 925
Ple19I CGATCG 1 cut(s) 501
PleI GAGTC 3 cut(s) 595, 692, 718
PpsI GAGTC 3 cut(s) 595, 692, 718
Psp6I CCWGG 4 cut(s) 105, 123, 348, 476
PspGI CCWGG 4 cut(s) 105, 123, 348, 476
PspN4I GGNNCC 6 cut(s) 357, 358, 379, 474, 765, 839
PspOMI GGGCCC 1 cut(s) 356
PspPI GGNCC 7 cut(s) 109, 356, 357, 447, 764, 816, 868
PsuI RGATCY 3 cut(s) 452, 472, 605
PsyI GACNNNGTC 1 cut(s) 742
PteI GCGCGC 1 cut(s) 623
PvuI CGATCG 1 cut(s) 501
RgaI GCGATCGC 1 cut(s) 501
RruI TCGCGA 1 cut(s) 503
RsaI GTAC 2 cut(s) 343, 401
RsaNI GTAC 2 cut(s) 342, 400
SalI GTCGAC 1 cut(s) 703
SapI GCTCTTC 2 cut(s) 401, 613
SatI GCNGC 7 cut(s) 7, 21, 131, 384, 658, 908, 924
Sau3AI GATC 8 cut(s) 277, 283, 452, 472, 498, 605, 876, 888
Sau96I GGNCC 7 cut(s) 109, 356, 357, 447, 764, 816, 868
SchI GAGTC 3 cut(s) 596, 692, 718
ScrFI CCNGG 6 cut(s) 107, 125, 170, 350, 371, 478
SduI GDGCHC 3 cut(s) 106, 360, 806
SfaAI GCGATCGC 1 cut(s) 501
SfcI CTRYAG 1 cut(s) 337
SgfI GCGATCGC 1 cut(s) 501
SgrAI CRCCGGYG 2 cut(s) 205, 881
SgrDI CGTCGACG 1 cut(s) 703
SinI GGWCC 3 cut(s) 447, 764, 868
SphI GCATGC 1 cut(s) 853
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 6 cut(s) 105, 123, 168, 348, 369, 476
StyI CCWWGG 1 cut(s) 871
TaaI ACNGT 4 cut(s) 341, 595, 678, 986
TaiI ACGT 4 cut(s) 243, 509, 780, 794
TaqI TCGA 5 cut(s) 87, 566, 704, 746, 947
TauI GCSGC 4 cut(s) 23, 386, 910, 926
TscAI CASTG 1 cut(s) 839
TseI GCWGC 3 cut(s) 6, 130, 657
TspDTI ATGAA 2 cut(s) 722, 953
TspGWI ACGGA 3 cut(s) 53, 217, 485
TspRI CASTG 1 cut(s) 839
Tth111I GACNNNGTC 1 cut(s) 742
VpaK11BI GGWCC 3 cut(s) 447, 764, 868
XceI RCATGY 1 cut(s) 853
XmiI GTMKAC 1 cut(s) 704
XspI CTAG 1 cut(s) 33
ZraI GACGTC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.