pycom02g19430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014413
Physical Location & Seq
Reverse (-)
17259074 .. 17260018
945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g19430.1

Sequence Viewer

Length: 945 bp
ATGAGGTGCAAGAAGCACCTCGCCGACCTCACCAGCACCCTCGGCGTCTGCGCCTCCTGTCTCCGGGAGCGCCTCGCCGCCCTCATCGAGGCCCAAATCCAGGCCCAGGCCCAGCTCTCGAGACTCCACTCCCGGACCACCGCCGCGGCGCCGCTTGATGAACCCAACCGCAAGTCCGACCCCAACCCTCCGCCACTTATCTTCCCCCGTTCCGTCTCCCCCTATGTCTCTCGAAGAAAATCGGACGATTCCACGTGGCACTACCACCACCACCGTCCAGATCACAATCAGCAACACCACCACCACCACCATCAACAACAGCACCGGATTCGATTCTACAGTACGCCTCAGGTGGGCCCTACATATACCAACGCCAACTCCACTATTGAAGGCTCGTGCAAGAAGAGCAAGACGCGGTTCTCGCTCTTATCGAATCTTTTCCGATCCAGATCCGATAAGTCCTGGTCGGATCCTAGGGATTCGTCGCTACCGGCGAGGTCATCGTCGTCGGCTTCGTCGCCCTCGTGGTTCTCTTCGATCTTCGCTAGGAAAACGCGGAATCGATCGAAACATCTCTACGCCGACGAGTCCTCCGGTTTCGCGAGACCTCGCGGATTGTCACCGGACCTGACGCCCGATCCCTTCGAAGACTGCAATCGATCGCGGTCGGGAAGCGGTGATTCGTCGGCGACGACGCCGGAGTGGAAGAAGACGCCGACGCTGGCTCCGTCGTCGACGAGGAGGGCACGTGCCGGGCAGGGAAAGAACAACGTATCGGGTCTGGCGTTTTGCCTGAGCCCGCTGGTTCGAGCCAGCCCGAACCGGCACTGGAACCAGAAGGGATTGCCGCCGGAGATCGCCGGCGAGATTCGCGTAGCGGCGTCGTTCTGCAAGAACCGGTCAAGGAAGCTGGCGGATTTCGGTAGAGCCAATCCTAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

315

Amino Acids

35.13

Weight (kDa)

10.61

Isoelectric Point (pI)

63.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44600 AT3G60200
fragaria_vesca FvH4_7g08720
malus_domestica MD07G1088100.v1.1
prunus_persica Prupe.2G114900_v2.0.a1
pyrus_communis pycom02g19430 pycom07g07070
rosa_laevigata RLG00000028945 RLG00000030787
rosa_multiflora Rmu_ssc0000434.1_g000045
rosa_roxburghii Rroxscaffold_4G00310220
rosa_rugosa Rorug01G0169900
rosa_samantha Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana Rw1G015380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AccI GTMKAC 1 cut(s) 734
AccII CGCG 7 cut(s) 146, 415, 556, 602, 612, 664, 873
AclWI GGATC 5 cut(s) 438, 444, 464, 477, 632
AcvI CACGTG 2 cut(s) 255, 749
AcyI GRCGYC 6 cut(s) 45, 149, 632, 695, 713, 881
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 5 cut(s) 63, 88, 100, 106, 353
AgeI ACCGGT 1 cut(s) 897
AgsI TTSAA 1 cut(s) 389
AjnI CCWGG 3 cut(s) 99, 105, 461
AluBI AGCT 2 cut(s) 115, 910
AluI AGCT 2 cut(s) 115, 910
Alw26I GTCTC 5 cut(s) 65, 115, 220, 232, 598
AlwI GGATC 5 cut(s) 438, 444, 464, 477, 632
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 4 cut(s) 90, 102, 108, 355
ApaI GGGCCC 1 cut(s) 359
AsiGI ACCGGT 1 cut(s) 897
Asp700I GAANNNNTTC 1 cut(s) 437
AspA2I CCTAGG 1 cut(s) 473
AspLEI GCGC 3 cut(s) 53, 72, 151
AspS9I GGNCC 7 cut(s) 91, 103, 109, 135, 355, 356, 625
AsuC2I CCSGG 3 cut(s) 65, 133, 754
AsuHPI GGTGA 3 cut(s) 22, 612, 689
AsuII TTCGAA 1 cut(s) 645
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 2 cut(s) 135, 625
AvrII CCTAGG 1 cut(s) 473
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 2 cut(s) 359, 748
BamHI GGATCC 1 cut(s) 469
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 2 cut(s) 359, 800
BauI CACGAG 2 cut(s) 394, 523
BbrPI CACGTG 2 cut(s) 255, 749
BbsI GAAGAC 2 cut(s) 654, 716
BccI CCATC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 3 cut(s) 101, 107, 463
BcnI CCSGG 3 cut(s) 65, 133, 754
BcoDI GTCTC 5 cut(s) 65, 115, 220, 232, 598
BfaI CTAG 2 cut(s) 474, 546
BfmI CTRYAG 1 cut(s) 337
BfoI RGCGCY 2 cut(s) 73, 152
BisI GCNGC 6 cut(s) 78, 144, 147, 152, 848, 879
BlnI CCTAGG 1 cut(s) 473
BlsI GCNGC 6 cut(s) 79, 145, 148, 153, 849, 880
Bme1390I CCNGG 6 cut(s) 65, 101, 107, 133, 463, 754
Bme18I GGWCC 2 cut(s) 135, 625
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 7 cut(s) 91, 103, 109, 135, 355, 356, 625
BmiI GGNNCC 5 cut(s) 150, 357, 471, 726, 833
BmrFI CCNGG 6 cut(s) 65, 101, 107, 133, 463, 754
BpiI GAAGAC 2 cut(s) 654, 716
Bpu10I CCTNAGC 1 cut(s) 794
Bpu14I TTCGAA 1 cut(s) 645
BpuMI CCSGG 3 cut(s) 65, 133, 754
Bsa29I ATCGAT 2 cut(s) 562, 658
BsaAI YACGTR 2 cut(s) 255, 749
BsaBI GATNNNNATC 2 cut(s) 285, 448
BsaHI GRCGYC 6 cut(s) 45, 149, 632, 695, 713, 881
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 4 cut(s) 40, 105, 144, 473
BsaWI WCCGGW 4 cut(s) 324, 593, 622, 897
BsaXI ACNNNNNCTCC 8 cut(s) 362, 392, 575, 605, 709, 733, 739, 763
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 88, 100, 106, 353
Bse118I RCCGGY 4 cut(s) 490, 822, 860, 897
Bse1I ACTGG 1 cut(s) 833
Bse21I CCTNAGG 1 cut(s) 348
Bse8I GATNNNNATC 2 cut(s) 285, 448
BseBI CCWGG 3 cut(s) 101, 107, 463
BseCI ATCGAT 2 cut(s) 562, 658
BseDI CCNNGG 4 cut(s) 40, 105, 144, 473
BseJI GATNNNNATC 2 cut(s) 285, 448
BseLI CCNNNNNNNGG 5 cut(s) 63, 88, 100, 106, 353
BseMII CTCAG 2 cut(s) 362, 785
BseNI ACTGG 1 cut(s) 833
BseRI GAGGAG 1 cut(s) 754
BseSI GKGCMC 2 cut(s) 359, 748
BseYI CCCAGC 1 cut(s) 111
Bsh1236I CGCG 7 cut(s) 146, 415, 556, 602, 612, 664, 873
Bsh1285I CGRYCG 3 cut(s) 566, 662, 668
BshFI GGCC 4 cut(s) 92, 104, 110, 357
BshNI GGYRCC 1 cut(s) 148
BshTI ACCGGT 1 cut(s) 897
BshVI ATCGAT 2 cut(s) 562, 658
BsiEI CGRYCG 3 cut(s) 566, 662, 668
BsiHKCI CYCGRG 1 cut(s) 118
BslI CCNNNNNNNGG 5 cut(s) 63, 88, 100, 106, 353
BsmAI GTCTC 5 cut(s) 65, 115, 220, 232, 598
BsmBI CGTCTC 1 cut(s) 220
BsnI GGCC 4 cut(s) 92, 104, 110, 357
Bso31I GGTCTC 1 cut(s) 598
BsoBI CYCGRG 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 645
Bsp120I GGGCCC 1 cut(s) 355
Bsp1286I GDGCHC 3 cut(s) 359, 748, 800
Bsp143I GATC 9 cut(s) 280, 443, 449, 469, 537, 563, 637, 659, 855
Bsp68I TCGCGA 1 cut(s) 602
BspANI GGCC 4 cut(s) 92, 104, 110, 357
BspCNI CTCAG 2 cut(s) 361, 786
BspDI ATCGAT 2 cut(s) 562, 658
BspFNI CGCG 7 cut(s) 146, 415, 556, 602, 612, 664, 873
BspLI GGNNCC 5 cut(s) 150, 357, 471, 726, 833
BspPI GGATC 5 cut(s) 438, 444, 464, 477, 632
BspQI GCTCTTC 1 cut(s) 398
BspT104I TTCGAA 1 cut(s) 645
BspT107I GGYRCC 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 598
BsrFI RCCGGY 4 cut(s) 490, 822, 860, 897
BsrI ACTGG 1 cut(s) 833
BssAI RCCGGY 4 cut(s) 490, 822, 860, 897
BssECI CCNNGG 4 cut(s) 40, 105, 144, 473
BssMI GATC 9 cut(s) 280, 443, 449, 469, 537, 563, 637, 659, 855
BssNI GRCGYC 6 cut(s) 45, 149, 632, 695, 713, 881
BssSI CACGAG 2 cut(s) 394, 523
BssT1I CCWWGG 1 cut(s) 473
Bst2BI CACGAG 2 cut(s) 394, 523
Bst2UI CCWGG 3 cut(s) 101, 107, 463
Bst4CI ACNGT 3 cut(s) 275, 341, 941
Bst6I CTCTTC 2 cut(s) 398, 538
BstACI GRCGYC 6 cut(s) 45, 149, 632, 695, 713, 881
BstBAI YACGTR 2 cut(s) 255, 749
BstBI TTCGAA 1 cut(s) 645
BstC8I GCNNGC 5 cut(s) 723, 800, 814, 862, 912
BstDEI CTNAG 2 cut(s) 348, 794
BstDSI CCRYGG 1 cut(s) 144
BstENI CCTNNNNNAGG 1 cut(s) 86
BstFNI CGCG 7 cut(s) 146, 415, 556, 602, 612, 664, 873
BstH2I RGCGCY 2 cut(s) 73, 152
BstHHI GCGC 3 cut(s) 53, 72, 151
BstKTI GATC 9 cut(s) 283, 446, 452, 472, 540, 566, 640, 662, 858
BstMAI GTCTC 5 cut(s) 65, 115, 220, 232, 598
BstMBI GATC 9 cut(s) 280, 443, 449, 469, 537, 563, 637, 659, 855
BstMCI CGRYCG 3 cut(s) 566, 662, 668
BstMWI GCNNNNNNNGC 4 cut(s) 42, 405, 421, 870
BstNI CCWGG 3 cut(s) 101, 107, 463
BstSCI CCNGG 6 cut(s) 63, 99, 105, 131, 461, 752
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 2 cut(s) 359, 748
BstUI CGCG 7 cut(s) 146, 415, 556, 602, 612, 664, 873
BstV2I GAAGAC 2 cut(s) 654, 716
BstX2I RGATCY 2 cut(s) 449, 469
BstYI RGATCY 2 cut(s) 449, 469
Bsu15I ATCGAT 2 cut(s) 562, 658
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 4 cut(s) 92, 104, 110, 357
BsuTUI ATCGAT 2 cut(s) 562, 658
BtgI CCRYGG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 826
BtuMI TCGCGA 1 cut(s) 602
Cac8I GCNNGC 5 cut(s) 723, 800, 814, 862, 912
CfoI GCGC 3 cut(s) 53, 72, 151
Cfr10I RCCGGY 4 cut(s) 490, 822, 860, 897
Cfr13I GGNCC 7 cut(s) 91, 103, 109, 135, 355, 356, 625
Cfr42I CCGCGG 1 cut(s) 147
ClaI ATCGAT 2 cut(s) 562, 658
CseI GACGC 7 cut(s) 34, 421, 640, 703, 721, 727, 870
Csp6I GTAC 1 cut(s) 342
CspAI ACCGGT 1 cut(s) 897
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 2 cut(s) 348, 794
DinI GGCGCC 1 cut(s) 150
DpnI GATC 9 cut(s) 282, 445, 451, 471, 539, 565, 639, 661, 857
DpnII GATC 9 cut(s) 280, 443, 449, 469, 537, 563, 637, 659, 855
Eam1104I CTCTTC 2 cut(s) 398, 538
EarI CTCTTC 2 cut(s) 398, 538
EciI GGCGGA 2 cut(s) 180, 929
Eco130I CCWWGG 1 cut(s) 473
Eco24I GRGCYC 2 cut(s) 359, 800
Eco31I GGTCTC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 135, 625
Eco72I CACGTG 2 cut(s) 255, 749
Eco81I CCTNAGG 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 99, 105, 461
EcoT14I CCWWGG 1 cut(s) 473
EcoT38I GRGCYC 2 cut(s) 359, 800
EgeI GGCGCC 1 cut(s) 150
EheI GGCGCC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 473
Esp3I CGTCTC 1 cut(s) 220
FaiI YATR 3 cut(s) 225, 364, 366
FauI CCCGC 1 cut(s) 807
FblI GTMKAC 1 cut(s) 734
Fnu4HI GCNGC 6 cut(s) 78, 144, 147, 152, 848, 879
FriOI GRGCYC 2 cut(s) 359, 800
Fsp4HI GCNGC 6 cut(s) 78, 144, 147, 152, 848, 879
FspBI CTAG 2 cut(s) 474, 546
GlaI GCGC 3 cut(s) 52, 71, 150
GluI GCNGC 6 cut(s) 78, 144, 147, 152, 848, 879
GsaI CCCAGC 1 cut(s) 115
HaeII RGCGCY 2 cut(s) 73, 152
HaeIII GGCC 4 cut(s) 92, 104, 110, 357
HgaI GACGC 7 cut(s) 34, 421, 640, 703, 721, 727, 870
HhaI GCGC 3 cut(s) 53, 72, 151
Hin1I GRCGYC 6 cut(s) 45, 149, 632, 695, 713, 881
Hin6I GCGC 3 cut(s) 51, 70, 149
HinP1I GCGC 3 cut(s) 51, 70, 149
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HphI GGTGA 3 cut(s) 22, 612, 689
Hpy166II GTNNAC 1 cut(s) 735
Hpy188I TCNGA 5 cut(s) 178, 244, 443, 454, 469
Hpy188III TCNNGA 7 cut(s) 118, 120, 231, 278, 447, 601, 669
Hpy8I GTNNAC 1 cut(s) 735
HpyAV CCTTC 3 cut(s) 383, 652, 832
HpyCH4III ACNGT 3 cut(s) 275, 341, 941
HpyCH4IV ACGT 3 cut(s) 254, 748, 771
HpyCH4V TGCA 4 cut(s) 9, 399, 654, 891
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 405, 421, 870
HpyF3I CTNAG 2 cut(s) 348, 794
HpySE526I ACGT 3 cut(s) 254, 748, 771
Hsp92I GRCGYC 6 cut(s) 45, 149, 632, 695, 713, 881
HspAI GCGC 3 cut(s) 51, 70, 149
KasI GGCGCC 1 cut(s) 148
KroI GCCGGC 1 cut(s) 860
KroNI GCCGGC 1 cut(s) 862
KspI CCGCGG 1 cut(s) 147
Kzo9I GATC 9 cut(s) 280, 443, 449, 469, 537, 563, 637, 659, 855
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 2 cut(s) 67, 730
MaeI CTAG 2 cut(s) 474, 546
MaeII ACGT 3 cut(s) 254, 748, 771
MaeIII GTNAC 1 cut(s) 618
MalI GATC 9 cut(s) 282, 445, 451, 471, 539, 565, 639, 661, 857
MboI GATC 9 cut(s) 280, 443, 449, 469, 537, 563, 637, 659, 855
MboII GAAGA 8 cut(s) 193, 246, 415, 525, 532, 659, 718, 721
MflI RGATCY 2 cut(s) 449, 469
MhlI GDGCHC 3 cut(s) 359, 748, 800
Mly113I GGCGCC 1 cut(s) 149
MlyI GAGTC 2 cut(s) 117, 596
MmeI TCCRAC 2 cut(s) 201, 447
MreI CGCCGGCG 1 cut(s) 860
MroNI GCCGGC 1 cut(s) 860
MroXI GAANNNNTTC 1 cut(s) 437
MspA1I CMGCKG 2 cut(s) 146, 802
MspR9I CCNGG 6 cut(s) 65, 101, 107, 133, 463, 754
MvaI CCWGG 3 cut(s) 101, 107, 463
MvnI CGCG 7 cut(s) 146, 415, 556, 602, 612, 664, 873
MwoI GCNNNNNNNGC 4 cut(s) 42, 405, 421, 870
NaeI GCCGGC 1 cut(s) 862
NarI GGCGCC 1 cut(s) 149
NciI CCSGG 3 cut(s) 65, 133, 754
NdeII GATC 9 cut(s) 280, 443, 449, 469, 537, 563, 637, 659, 855
NgoMIV GCCGGC 1 cut(s) 860
NlaIV GGNNCC 5 cut(s) 150, 357, 471, 726, 833
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 618
NruI TCGCGA 1 cut(s) 602
NspV TTCGAA 1 cut(s) 645
PaeR7I CTCGAG 1 cut(s) 118
PciSI GCTCTTC 1 cut(s) 398
PcsI WCGNNNNNNNCGW 7 cut(s) 428, 491, 512, 521, 689, 725, 782
PdiI GCCGGC 1 cut(s) 862
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 8 cut(s) 248, 328, 333, 433, 479, 559, 680, 868
PfoI TCCNGGA 2 cut(s) 63, 131
PinAI ACCGGT 1 cut(s) 897
PkrI GCNGC 6 cut(s) 79, 145, 148, 153, 849, 880
Ple19I CGATCG 2 cut(s) 566, 662
PleI GAGTC 2 cut(s) 117, 595
PluTI GGCGCC 1 cut(s) 152
PmaCI CACGTG 2 cut(s) 255, 749
PmlI CACGTG 2 cut(s) 255, 749
PpsI GAGTC 2 cut(s) 117, 595
Ppu21I YACGTR 2 cut(s) 255, 749
Psp6I CCWGG 3 cut(s) 99, 105, 461
PspCI CACGTG 2 cut(s) 255, 749
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 3 cut(s) 99, 105, 461
PspN4I GGNNCC 5 cut(s) 150, 357, 471, 726, 833
PspOMI GGGCCC 1 cut(s) 355
PspPI GGNCC 7 cut(s) 91, 103, 109, 135, 355, 356, 625
PsuI RGATCY 2 cut(s) 449, 469
PvuI CGATCG 2 cut(s) 566, 662
RruI TCGCGA 1 cut(s) 602
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SacII CCGCGG 1 cut(s) 147
SalI GTCGAC 1 cut(s) 733
SapI GCTCTTC 1 cut(s) 398
SatI GCNGC 6 cut(s) 78, 144, 147, 152, 848, 879
Sau3AI GATC 9 cut(s) 280, 443, 449, 469, 537, 563, 637, 659, 855
Sau96I GGNCC 7 cut(s) 91, 103, 109, 135, 355, 356, 625
SchI GAGTC 2 cut(s) 117, 596
ScrFI CCNGG 6 cut(s) 65, 101, 107, 133, 463, 754
SduI GDGCHC 3 cut(s) 359, 748, 800
SfcI CTRYAG 1 cut(s) 337
SfoI GGCGCC 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 118
Sfr303I CCGCGG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 645
SgrAI CRCCGGYG 1 cut(s) 860
SgrBI CCGCGG 1 cut(s) 147
SgrDI CGTCGACG 1 cut(s) 733
SinI GGWCC 2 cut(s) 135, 625
SlaI CTCGAG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SspDI GGCGCC 1 cut(s) 148
SspMI CTAG 2 cut(s) 474, 546
StyD4I CCNGG 6 cut(s) 63, 99, 105, 131, 461, 752
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 3 cut(s) 275, 341, 941
TaiI ACGT 3 cut(s) 257, 751, 774
TauI GCSGC 6 cut(s) 80, 146, 149, 154, 850, 881
TfiI GAWTC 8 cut(s) 248, 328, 333, 433, 479, 559, 680, 868
TscAI CASTG 1 cut(s) 833
TseFI GTSAC 1 cut(s) 618
Tsp45I GTSAC 1 cut(s) 618
TspDTI ATGAA 1 cut(s) 174
TspGWI ACGGA 2 cut(s) 202, 717
TspRI CASTG 1 cut(s) 833
VpaK11BI GGWCC 2 cut(s) 135, 625
XagI CCTNNNNNAGG 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 118
XmaJI CCTAGG 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 734
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 2 cut(s) 474, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.