Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

18606410 .. 18607853

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAAGTTTGGAAAGAGGATTAAAGAACAGATACAAGAGTCGTTGCCGGAGTGGCGAGACAAGTTTCTTCGTTACAAGGAACTCAAGAATCTGATCTCTTCTCCGGCGCCGGTGGAATCTATTTTCGTCGGTTTGTTGAACGCAGAGATCGACAAGTTTAATGCTTTCTTCGTCGAACAAGAAGAAGATTTCATCATCCACCACAAGGAGTTGCAATATCGGATTCAGAGATTGGTAGAGAAATGTGGACACAATGATGAAATGTCTAGAGAGAATATTAGTGAGATCAGAAAAGATATTGTCAATTTCCATGGCGAAATGGTTCTGCTAGTAAACTACAGTAACATCAATTACACTGGATTAGCAAAGATTCTAAAGAAGTACGACAAGCGAACAAGAGGAGGATTAAGATCACCATTTATTCAAAAAGTTCTTCATCAACCGTTTTTCAAGACTGATCTTGTTTCAAGACTAGTAAGAGAGTGGGAGACGACGATGGACGCGGTGGATCCAGTGAAGGTGGCGGAGGCGGAGGGATACGAGAGATGTGCGGCGGTGACTTCGGCAGCGGCGGGAGAAGGGATATTTAGGAATACGGTTGCGGCATTATTGACTATGAAAGAGATGAGAAGAGGAAGTTCGACTTACAGTGCATTCTCACTTCCGCCGCTAAATATCTCCGATTCCGATAATGTTCTCCGATCTCTTCATCTATCTTCTCCGATTCCTATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

245

Amino Acids

28.15

Weight (kDa)

8.42

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 33	2e-07	SPX domain
SPX	PF03105	84 - 144	1e-10	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccII	CGCG	1 cut(s)	503
AclWI	GGATC	2 cut(s)	503, 516
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	4 cut(s)	139, 425, 451, 468
AhlI	ACTAGT	1 cut(s)	472
Alw26I	GTCTC	2 cut(s)	51, 482
AlwI	GGATC	2 cut(s)	503, 516
ApeKI	GCWGC	1 cut(s)	566
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	405, 568
BaeI	ACNNNNGTAYC	2 cut(s)	23, 56
BamHI	GGATCC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	1 cut(s)	490
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciVI	GTATCC	1 cut(s)	530
BcoDI	GTCTC	2 cut(s)	51, 482
BcuI	ACTAGT	1 cut(s)	472
BfaI	CTAG	3 cut(s)	267, 329, 473
BfmI	CTRYAG	1 cut(s)	337
BfoI	RGCGCY	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	530
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	5 cut(s)	552, 567, 570, 603, 668
BlsI	GCNGC	5 cut(s)	553, 568, 571, 604, 669
BmiI	GGNNCC	2 cut(s)	108, 510
BpuEI	CTTGAG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	361, 512
Bse8I	GATNNNNATC	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	361, 512
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	503
BshNI	GGYRCC	1 cut(s)	106
BsiSI	CCGG	3 cut(s)	47, 104, 110
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	51, 482
BsmBI	CGTCTC	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	653
Bsp143I	GATC	7 cut(s)	93, 147, 285, 410, 457, 508, 701
Bsp19I	CCATGG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	2 cut(s)	108, 510
BspPI	GGATC	2 cut(s)	503, 516
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	361, 512
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	7 cut(s)	93, 147, 285, 410, 457, 508, 701
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	310
Bst4CI	ACNGT	4 cut(s)	341, 444, 598, 650
Bst6I	CTCTTC	3 cut(s)	103, 625, 711
BstACI	GRCGYC	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	503
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	7 cut(s)	96, 150, 288, 413, 460, 511, 704
BstMAI	GTCTC	2 cut(s)	51, 482
BstMBI	GATC	7 cut(s)	93, 147, 285, 410, 457, 508, 701
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	578
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuI	GTATCC	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	354, 519, 655
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	109
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	2 cut(s)	311, 735
CviQI	GTAC	1 cut(s)	382
DinI	GGCGCC	1 cut(s)	108
DpnI	GATC	7 cut(s)	95, 149, 287, 412, 459, 510, 703
DpnII	GATC	7 cut(s)	93, 147, 285, 410, 457, 508, 701
Eam1104I	CTCTTC	3 cut(s)	103, 625, 711
EarI	CTCTTC	3 cut(s)	103, 625, 711
EciI	GGCGGA	3 cut(s)	539, 545, 654
Eco130I	CCWWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	310
EgeI	GGCGCC	1 cut(s)	108
EheI	GGCGCC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	2 cut(s)	314, 738
FaiI	YATR	3 cut(s)	312, 617, 736
FalI	AAGNNNNNCTT	2 cut(s)	628, 660
FatI	CATG	2 cut(s)	310, 734
FauI	CCCGC	1 cut(s)	565
Fnu4HI	GCNGC	5 cut(s)	552, 567, 570, 603, 668
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	5 cut(s)	552, 567, 570, 603, 668
FspBI	CTAG	3 cut(s)	267, 329, 473
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	5 cut(s)	552, 567, 570, 603, 668
HaeII	RGCGCY	1 cut(s)	110
HapII	CCGG	3 cut(s)	47, 104, 110
HgaI	GACGC	1 cut(s)	509
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	314, 738
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	7 cut(s)	38, 88, 116, 223, 370, 683, 724
HpaII	CCGG	3 cut(s)	47, 104, 110
HphI	GGTGA	2 cut(s)	405, 568
Hpy166II	GTNNAC	2 cut(s)	248, 334
Hpy188I	TCNGA	8 cut(s)	93, 222, 228, 290, 682, 688, 701, 723
Hpy188III	TCNNGA	4 cut(s)	85, 267, 451, 468
Hpy8I	GTNNAC	2 cut(s)	248, 334
Hpy99I	CGWCG	3 cut(s)	131, 176, 496
HpyAV	CCTTC	2 cut(s)	511, 572
HpyCH4III	ACNGT	4 cut(s)	341, 444, 598, 650
HpyCH4V	TGCA	2 cut(s)	214, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	314, 738
HspAI	GCGC	1 cut(s)	107
KasI	GGCGCC	1 cut(s)	106
Kzo9I	GATC	7 cut(s)	93, 147, 285, 410, 457, 508, 701
LpnPI	CCDG	5 cut(s)	60, 117, 123, 342, 525
Lsp1109I	GCAGC	1 cut(s)	578
MaeI	CTAG	3 cut(s)	267, 329, 473
MaeIII	GTNAC	3 cut(s)	71, 341, 556
MalI	GATC	7 cut(s)	95, 149, 287, 412, 459, 510, 703
MboI	GATC	7 cut(s)	93, 147, 285, 410, 457, 508, 701
MboII	GAAGA	9 cut(s)	59, 90, 160, 194, 197, 425, 642, 698, 708
MflI	RGATCY	1 cut(s)	508
MluCI	AATT	2 cut(s)	304, 349
Mly113I	GGCGCC	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	6 cut(s)	9, 392, 395, 520, 526, 626
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	3 cut(s)	21, 159, 407
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	3 cut(s)	47, 104, 110
Mva1269I	GAATGC	1 cut(s)	653
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	7 cut(s)	93, 147, 285, 410, 457, 508, 701
NlaIII	CATG	2 cut(s)	314, 738
NlaIV	GGNNCC	2 cut(s)	108, 510
NmuCI	GTSAC	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	6 cut(s)	88, 116, 223, 370, 683, 724
PkrI	GCNGC	5 cut(s)	553, 568, 571, 604, 669
PleI	GAGTC	1 cut(s)	46
PluTI	GGCGCC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	108, 510
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	21, 159, 407
SatI	GCNGC	5 cut(s)	552, 567, 570, 603, 668
Sau3AI	GATC	7 cut(s)	93, 147, 285, 410, 457, 508, 701
SchI	GAGTC	1 cut(s)	47
SetI	ASST	1 cut(s)	522
SfcI	CTRYAG	1 cut(s)	337
SfoI	GGCGCC	1 cut(s)	108
SgrAI	CRCCGGYG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SpeI	ACTAGT	1 cut(s)	472
Sse9I	AATT	2 cut(s)	304, 349
SspDI	GGCGCC	1 cut(s)	106
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	3 cut(s)	267, 329, 473
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	4 cut(s)	341, 444, 598, 650
TaqI	TCGA	3 cut(s)	150, 174, 641
TasI	AATT	2 cut(s)	304, 349
TauI	GCSGC	4 cut(s)	554, 572, 605, 670
TfiI	GAWTC	6 cut(s)	88, 116, 223, 370, 683, 724
Tru1I	TTAA	3 cut(s)	21, 159, 407
Tru9I	TTAA	3 cut(s)	21, 159, 407
TscAI	CASTG	3 cut(s)	361, 519, 655
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	6 cut(s)	17, 181, 273, 425, 632, 698
TspRI	CASTG	3 cut(s)	361, 519, 655
XbaI	TCTAGA	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	3 cut(s)	267, 329, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.