Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

40822938 .. 40825224

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGTTCGGGAAAAGGCTGAAGCACCAAATGCAGGAGACGTTGCCGAGCTGGCGTGACAAGTTCTTGTCATACAAGGACTTGAAGAAGCTTGTGAGGCTGATTTCTTCGGCTCCGGCGGTGTTGAACGGGAAGTCCGGTAAGGCGGAGGCGGAGTTTGTGTACCTGTTGAACAATGAGATCGACAAGTTCAATGCCTTCTTCATGGAGCAGGAGGAGGACTTCATTATCCGGAATAAGAATAAAAAAATAACTGACACATGGGGACCGAATGGTAGTCATGCTTCAAAGACTACATATGAAGATGAAGTCGGGAAGCTTAGAAAAGACATTGTTGATTTCCACGGTGAAATGGTGCTCTTGGTCAACTACAGCAATATCAACTACACAGGATTGGCCAAAATACTGAAGAAGTATGACAAGAGAACAGGTGCTCTGCTGCGCTTGCCATTCATCCAAAAAATACTAGAGCAGCCCTTCTTCACCACTGATCTTATCTCAAAGCTTGTCAAGGAATGTGAAGGCAGCATCGATGCAGTGTTCCCAGTGGAGGAAGAAGAGGAGAGGAAAAAAGAAGTAAGGGAAGCAATAACAGTTGGCGGGGAAGGAATATTTCGAAACACAGTTGCAGCTCTACTGACAATGCAAGAAATCAGAAGAGGAAGCTCTACTTACAGTCAGTATTCTCTACCACCAATCAACATGCCTGCAGACTCGGATCTCATCCAGTTAGTCCAACTCAACCCTCCCATAGCAATAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

254

Amino Acids

29.04

Weight (kDa)

8.42

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 36	2.9e-07	SPX domain
SPX	PF03105	96 - 154	1.1e-10	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	4 cut(s)	119, 146, 152, 600
AclWI	GGATC	1 cut(s)	726
AcoI	YGGCCR	1 cut(s)	396
AcuI	CTGAAG	2 cut(s)	41, 428
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	34, 550
AgsI	TTSAA	5 cut(s)	85, 127, 172, 193, 288
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	6 cut(s)	51, 91, 319, 505, 632, 666
AluI	AGCT	6 cut(s)	51, 91, 319, 505, 632, 666
Alw21I	GWGCWC	2 cut(s)	360, 436
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	726
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	4 cut(s)	439, 472, 525, 629
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	359, 475
AsuII	TTCGAA	1 cut(s)	616
AvaII	GGWCC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	398
BarI	GAAGNNNNNNTAC	2 cut(s)	268, 300
Bbv12I	GWGCWC	2 cut(s)	360, 436
BbvI	GCAGC	4 cut(s)	426, 484, 537, 641
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	467, 763
BfmI	CTRYAG	2 cut(s)	370, 708
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	440, 473, 526, 630
BlsI	GCNGC	4 cut(s)	441, 474, 527, 631
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	114, 267
BmrI	ACTGGG	1 cut(s)	539
BmsI	GCATC	2 cut(s)	523, 537
BmuI	ACTGGG	1 cut(s)	539
Bpu14I	TTCGAA	1 cut(s)	616
Bsa29I	ATCGAT	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	2 cut(s)	137, 231
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 146, 170, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 550
Bse1I	ACTGG	2 cut(s)	545, 727
BseAI	TCCGGA	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	453, 723
BseLI	CCNNNNNNNGG	2 cut(s)	34, 550
BseNI	ACTGG	2 cut(s)	545, 727
BseRI	GAGGAG	2 cut(s)	230, 575
BseXI	GCAGC	4 cut(s)	426, 484, 537, 641
BshFI	GGCC	1 cut(s)	398
BshVI	ATCGAT	1 cut(s)	531
BsiHKAI	GWGCWC	2 cut(s)	360, 436
BsiSI	CCGG	3 cut(s)	116, 138, 232
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	34, 550
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	360, 436
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	180, 490, 718
BspACI	CCGC	4 cut(s)	119, 146, 152, 600
BspANI	GGCC	1 cut(s)	398
BspDI	ATCGAT	1 cut(s)	531
BspEI	TCCGGA	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	114, 267
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	1 cut(s)	726
BspT104I	TTCGAA	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	545, 727
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	3 cut(s)	180, 490, 718
Bst4CI	ACNGT	4 cut(s)	347, 595, 625, 677
Bst6I	CTCTTC	2 cut(s)	552, 652
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	616
BstC8I	GCNNGC	3 cut(s)	53, 446, 708
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	453, 723
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	3 cut(s)	183, 493, 721
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	180, 490, 718
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 52, 97, 445
BstNSI	RCATGY	1 cut(s)	706
BstSFI	CTRYAG	2 cut(s)	370, 708
BstV1I	GCAGC	4 cut(s)	426, 484, 537, 641
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
Bsu15I	ATCGAT	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	398
BsuTUI	ATCGAT	1 cut(s)	531
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	453, 723
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	3 cut(s)	486, 543, 552
Cac8I	GCNNGC	3 cut(s)	53, 446, 708
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	1 cut(s)	266
ClaI	ATCGAT	1 cut(s)	531
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	4 cut(s)	205, 261, 281, 703
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	3 cut(s)	182, 492, 720
DpnII	GATC	3 cut(s)	180, 490, 718
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	552, 652
EarI	CTCTTC	2 cut(s)	552, 652
EciI	GGCGGA	2 cut(s)	161, 167
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	41, 428
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	4 cut(s)	208, 264, 284, 706
FaiI	YATR	9 cut(s)	73, 206, 262, 282, 298, 300, 417, 704, 752
FalI	AAGNNNNNCTT	2 cut(s)	655, 687
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	4 cut(s)	204, 260, 280, 702
FauI	CCCGC	1 cut(s)	593
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	440, 473, 526, 630
FokI	GGATG	2 cut(s)	440, 710
Fsp4HI	GCNGC	4 cut(s)	440, 473, 526, 630
FspBI	CTAG	2 cut(s)	467, 763
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	4 cut(s)	440, 473, 526, 630
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	3 cut(s)	116, 138, 232
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	208, 264, 284, 706
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	3 cut(s)	89, 317, 503
HinfI	GANTC	1 cut(s)	713
HpaII	CCGG	3 cut(s)	116, 138, 232
HphI	GGTGA	2 cut(s)	359, 475
Hpy166II	GTNNAC	2 cut(s)	163, 367
Hpy188I	TCNGA	2 cut(s)	656, 718
Hpy188III	TCNNGA	3 cut(s)	10, 232, 313
Hpy8I	GTNNAC	2 cut(s)	163, 367
HpyAV	CCTTC	4 cut(s)	208, 487, 515, 599
HpyCH4III	ACNGT	4 cut(s)	347, 595, 625, 677
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	5 cut(s)	34, 536, 629, 646, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 52, 97, 445
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	208, 264, 284, 706
HspAI	GCGC	1 cut(s)	442
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	180, 490, 718
LmnI	GCTCC	2 cut(s)	118, 208
Lsp1109I	GCAGC	4 cut(s)	426, 484, 537, 641
LweI	GCATC	2 cut(s)	523, 537
MaeI	CTAG	2 cut(s)	467, 763
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	3 cut(s)	182, 492, 720
MboI	GATC	3 cut(s)	180, 490, 718
MboII	GAAGA	9 cut(s)	97, 99, 193, 314, 421, 472, 566, 569, 669
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	2 cut(s)	360, 436
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	9 cut(s)	90, 142, 208, 211, 544, 553, 558, 653, 756
Mox20I	TGGCCA	1 cut(s)	398
MroI	TCCGGA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	3 cut(s)	116, 138, 232
MwoI	GCNNNNNNNGC	4 cut(s)	31, 52, 97, 445
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	3 cut(s)	180, 490, 718
NlaIII	CATG	4 cut(s)	208, 264, 284, 706
NlaIV	GGNNCC	2 cut(s)	114, 267
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	706
NspV	TTCGAA	1 cut(s)	616
PkrI	GCNGC	4 cut(s)	441, 474, 527, 631
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
PspN4I	GGNNCC	2 cut(s)	114, 267
PspPI	GGNCC	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SatI	GCNGC	4 cut(s)	440, 473, 526, 630
Sau3AI	GATC	3 cut(s)	180, 490, 718
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	707
SduI	GDGCHC	2 cut(s)	360, 436
SetI	ASST	9 cut(s)	44, 53, 93, 168, 321, 433, 507, 634, 668
SfaNI	GCATC	2 cut(s)	523, 537
SfcI	CTRYAG	2 cut(s)	370, 708
SfuI	TTCGAA	1 cut(s)	616
SinI	GGWCC	1 cut(s)	266
SsiI	CCGC	4 cut(s)	119, 146, 152, 600
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	2 cut(s)	467, 763
TaaI	ACNGT	4 cut(s)	347, 595, 625, 677
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	183, 531, 616
TaqII	GACCGA	1 cut(s)	283
TscAI	CASTG	3 cut(s)	493, 543, 552
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	4 cut(s)	439, 472, 525, 629
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	6 cut(s)	17, 193, 214, 315, 321, 442
TspRI	CASTG	3 cut(s)	493, 543, 552
VpaK11BI	GGWCC	1 cut(s)	266
XceI	RCATGY	1 cut(s)	706
XspI	CTAG	2 cut(s)	467, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.