Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000943.1

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

3002 .. 5306

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000943.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgaagttcggcaagaagctcaagcaccaaatacaggagtcgttgccgggctggcgggacaagttcttgtcatacaatgacttgaagaagcttgtgaggctgatttcttcttctccggtggtgttgaatgggaattcaggtaaggtggaggcggagtttgtgtacctgttgaacaatgagatcgacaagttcaatgccttcttcatggagcaggaggagaacttcattatccggaacgaggaattgcagcagagaataaaaaaggtgactgatacatgggaacccaatggtagtcagccttcgaacactatatatgaagatgaagtggggcagcttagaaaagacattgttgatttccacggcgaaatggtgctcttggtcaactatagcaacatcaattacacaggtagtagattggccaaaatactgaagaagtatgacaagagaacaggatctctgctgcgcttgccatttatccaaaaaatactagagcagcccttcctcaccactgatctgatctcaaagcttgtgaaggaatgtgaaagcaccattaatgcagtgtttccggtggaggaagaagaggagaggaaaagagaagtaaaggaagcgataacagttgccggggaaggaatatttagaaacacagttgccgctctattgacaatgcaagaaatcagaaaaggaagctctacttacagtcagtattctctaccaccaatcaacttgcctgtagactcggatctcatccagttagttcaactcaaccctcccacagcaatattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

261

Amino Acids

30.01

Weight (kDa)

5.91

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	732
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	3 cut(s)	55, 152, 651
AclWI	GGATC	2 cut(s)	460, 747
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	34, 238
AgsI	TTSAA	5 cut(s)	85, 127, 172, 193, 758
AluBI	AGCT	5 cut(s)	19, 91, 334, 526, 687
AluI	AGCT	5 cut(s)	19, 91, 334, 526, 687
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	460, 747
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	4 cut(s)	247, 331, 460, 493
ApoI	RAATTY	1 cut(s)	133
AseI	ATTAAT	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	465
AsuC2I	CCSGG	2 cut(s)	48, 622
AsuHPI	GGTGA	2 cut(s)	277, 496
AsuII	TTCGAA	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	419
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	259, 343, 447, 505
BceAI	ACGGC	1 cut(s)	376
BcnI	CCSGG	2 cut(s)	48, 622
BfaI	CTAG	2 cut(s)	488, 784
BfmI	CTRYAG	2 cut(s)	385, 729
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	5 cut(s)	248, 332, 461, 494, 651
BlsI	GCNGC	5 cut(s)	249, 333, 462, 495, 652
Bme1390I	CCNGG	2 cut(s)	48, 622
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	48, 622
Bpu14I	TTCGAA	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	2 cut(s)	48, 622
BsaJI	CCNNGG	2 cut(s)	358, 621
BsaWI	WCCGGW	3 cut(s)	115, 231, 565
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 146, 170, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 238
Bse1I	ACTGG	1 cut(s)	748
BseAI	TCCGGA	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	358, 621
BseGI	GGATG	1 cut(s)	744
BseLI	CCNNNNNNNGG	2 cut(s)	34, 238
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	2 cut(s)	230, 596
BseXI	GCAGC	4 cut(s)	259, 343, 447, 505
BshFI	GGCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	5 cut(s)	47, 116, 232, 566, 621
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	34, 238
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	5 cut(s)	180, 452, 511, 516, 739
BspACI	CCGC	3 cut(s)	55, 152, 651
BspANI	GGCC	1 cut(s)	419
BspEI	TCCGGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	460, 747
BspT104I	TTCGAA	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	653
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	2 cut(s)	358, 621
BssMI	GATC	5 cut(s)	180, 452, 511, 516, 739
Bst4CI	ACNGT	3 cut(s)	616, 646, 698
Bst6I	CTCTTC	1 cut(s)	573
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	53, 467
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	744
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	5 cut(s)	183, 455, 514, 519, 742
BstMBI	GATC	5 cut(s)	180, 452, 511, 516, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 97, 466
BstSCI	CCNGG	2 cut(s)	46, 620
BstSFI	CTRYAG	2 cut(s)	385, 729
BstV1I	GCAGC	4 cut(s)	259, 343, 447, 505
BstX2I	RGATCY	2 cut(s)	452, 739
BstYI	RGATCY	2 cut(s)	452, 739
BsuRI	GGCC	1 cut(s)	419
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	744
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	2 cut(s)	507, 564
Cac8I	GCNNGC	2 cut(s)	53, 467
CfoI	GCGC	1 cut(s)	465
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	205, 276
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	5 cut(s)	182, 454, 513, 518, 741
DpnII	GATC	5 cut(s)	180, 452, 511, 516, 739
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	133
FaeI	CATG	2 cut(s)	208, 279
FaiI	YATR	8 cut(s)	73, 206, 277, 311, 313, 315, 387, 438
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	204, 275
FauI	CCCGC	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	5 cut(s)	248, 332, 461, 494, 651
FokI	GGATG	1 cut(s)	731
Fsp4HI	GCNGC	5 cut(s)	248, 332, 461, 494, 651
FspBI	CTAG	2 cut(s)	488, 784
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	5 cut(s)	248, 332, 461, 494, 651
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	5 cut(s)	47, 116, 232, 566, 621
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	2 cut(s)	208, 279
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	2 cut(s)	89, 524
HinfI	GANTC	2 cut(s)	38, 734
HpaII	CCGG	5 cut(s)	47, 116, 232, 566, 621
HphI	GGTGA	2 cut(s)	277, 496
Hpy166II	GTNNAC	3 cut(s)	163, 382, 733
Hpy188I	TCNGA	3 cut(s)	516, 677, 739
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	3 cut(s)	163, 382, 733
HpyAV	CCTTC	5 cut(s)	208, 309, 508, 526, 620
HpyCH4III	ACNGT	3 cut(s)	616, 646, 698
HpyCH4V	TGCA	3 cut(s)	247, 557, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 97, 466
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	208, 279
HspAI	GCGC	1 cut(s)	463
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	180, 452, 511, 516, 739
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	4 cut(s)	259, 343, 447, 505
MaeI	CTAG	2 cut(s)	488, 784
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	5 cut(s)	182, 454, 513, 518, 741
MbiI	CCGCTC	1 cut(s)	653
MboI	GATC	5 cut(s)	180, 452, 511, 516, 739
MboII	GAAGA	8 cut(s)	97, 99, 102, 193, 329, 442, 587, 590
MflI	RGATCY	2 cut(s)	452, 739
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	3 cut(s)	133, 242, 397
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	2 cut(s)	47, 728
MnlI	CCTC	9 cut(s)	90, 142, 208, 232, 512, 565, 574, 579, 777
Mox20I	TGGCCA	1 cut(s)	419
MroI	TCCGGA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	419
MspI	CCGG	5 cut(s)	47, 116, 232, 566, 621
MspR9I	CCNGG	2 cut(s)	48, 622
MwoI	GCNNNNNNNGC	3 cut(s)	52, 97, 466
NciI	CCSGG	2 cut(s)	48, 622
NdeII	GATC	5 cut(s)	180, 452, 511, 516, 739
NlaIII	CATG	2 cut(s)	208, 279
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	302
PkrI	GCNGC	5 cut(s)	249, 333, 462, 495, 652
PleI	GAGTC	2 cut(s)	46, 728
PpsI	GAGTC	2 cut(s)	46, 728
PshBI	ATTAAT	1 cut(s)	552
PspN4I	GGNNCC	1 cut(s)	282
PsuI	RGATCY	2 cut(s)	452, 739
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	5 cut(s)	248, 332, 461, 494, 651
Sau3AI	GATC	5 cut(s)	180, 452, 511, 516, 739
SchI	GAGTC	2 cut(s)	47, 728
ScrFI	CCNGG	2 cut(s)	48, 622
SduI	GDGCHC	1 cut(s)	375
SfcI	CTRYAG	2 cut(s)	385, 729
SfuI	TTCGAA	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	133, 242, 397
SsiI	CCGC	3 cut(s)	55, 152, 651
SspI	AATATT	2 cut(s)	633, 780
SspMI	CTAG	2 cut(s)	488, 784
StyD4I	CCNGG	2 cut(s)	46, 620
TaaI	ACNGT	3 cut(s)	616, 646, 698
TaqI	TCGA	2 cut(s)	183, 302
TasI	AATT	3 cut(s)	133, 242, 397
TauI	GCSGC	1 cut(s)	653
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	2 cut(s)	514, 564
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	4 cut(s)	247, 331, 460, 493
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	5 cut(s)	17, 193, 214, 330, 336
TspRI	CASTG	2 cut(s)	514, 564
VspI	ATTAAT	1 cut(s)	552
XapI	RAATTY	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	732
XspI	CTAG	2 cut(s)	488, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.