Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

10358061 .. 10359455

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAGTTCGGGAAGAGGTTGAAGCACCAAATGCAGGAGACGTTGCCGAGCTGGCGTGACAAGTTCTTGTCATACGATCACTTGAAGAAGCTTGTGAGGCTGATTTCTTCGGCTCCTGCAATGTTGATTGGCAAGTCCGGTAAGGCGAAGGCGCAGTTTTTGTACGTGTTGAACAATGAGATCGACAAGTTCAATGCCTTCTTCATGGAGCGGGAGGAGGACTTCATTATAAGACACGAGGGATTGCGGCAGAGAATTAGAAAAGTAACTGATACATGGGGACCGAATGATAGCCATTCTTCAAAGATTATGTATGAAAATGAAGTGGGGAAGCTTAGGAAAGACATTGTTGATCTCCACGGCGAAATGGTACTCTTGGTCAACTACAGCAATATCAATTACACAGGATTGGCTAAAATACTGAAGAAGTATGACAAGAGAACCGGAGCTCTGCTGCGCTTGCCATTCATCCAAGAAATACTAGAGCAACCCTTCTTCACCACTGATCTGATCTCAAAACTTGTCAAGGAGTGTGAAGGCACCATTAATACAGTGTTTCCGGTAGAAGAAGAAGAAGAGAGGAAAATAGAAGTAAGGGAAGCAATGACAGTTACCGGGGAAGGAATATTTAGAAACACAGTTGTAGCTCTCTTGACAATGCAAGAAATCAGAAGAGGAAGCTCTACTTACAGTAAGTATTCTCTACCTCCAATCAACTTGCCTGCAGACTTGGATATCATCCGGTTAGTCCAACTCAACCCTTCCATACCAATAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

260

Amino Acids

29.99

Weight (kDa)

9.11

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 35	4.2e-07	SPX domain
SPX	PF03105	103 - 160	1.8e-10	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	539
AccBSI	CCGCTC	1 cut(s)	211
AciI	CCGC	2 cut(s)	211, 247
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	164, 372
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	5 cut(s)	22, 85, 172, 193, 303
AluBI	AGCT	6 cut(s)	51, 91, 334, 449, 647, 681
AluI	AGCT	6 cut(s)	51, 91, 334, 449, 647, 681
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	454
AseI	ATTAAT	1 cut(s)	546
AspLEI	GCGC	2 cut(s)	154, 459
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	451
BauI	CACGAG	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	441
BceAI	ACGGC	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	482, 778
BfmI	CTRYAG	2 cut(s)	385, 723
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	248, 455
BlsI	GCNGC	2 cut(s)	249, 456
Bme1390I	CCNGG	1 cut(s)	616
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	3 cut(s)	114, 282, 541
BmrFI	CCNGG	1 cut(s)	616
Bpu10I	CCTNAGC	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	616
BsaAI	YACGTR	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	358, 615
BsaWI	WCCGGW	4 cut(s)	137, 443, 559, 741
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse3DI	GCAATG	2 cut(s)	126, 609
BseDI	CCNNGG	2 cut(s)	358, 615
BseGI	GGATG	2 cut(s)	468, 738
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	2 cut(s)	126, 609
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	5 cut(s)	138, 444, 560, 615, 742
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	5 cut(s)	76, 180, 352, 505, 510
BspACI	CCGC	2 cut(s)	211, 247
BspLI	GGNNCC	3 cut(s)	114, 282, 541
BspMAI	CTGCAG	1 cut(s)	727
BspT107I	GGYRCC	1 cut(s)	539
BsrBI	CCGCTC	1 cut(s)	211
BsrDI	GCAATG	2 cut(s)	126, 609
BssECI	CCNNGG	2 cut(s)	358, 615
BssMI	GATC	5 cut(s)	76, 180, 352, 505, 510
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst4CI	ACNGT	4 cut(s)	553, 610, 640, 692
Bst6I	CTCTTC	3 cut(s)	8, 570, 667
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	53, 461, 723
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	468, 738
BstHHI	GCGC	2 cut(s)	154, 459
BstKTI	GATC	5 cut(s)	79, 183, 355, 508, 513
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	5 cut(s)	76, 180, 352, 505, 510
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 52, 97, 460
BstSCI	CCNGG	1 cut(s)	614
BstSFI	CTRYAG	2 cut(s)	385, 723
BstV1I	GCAGC	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	468, 738
BtsIMutI	CAGTG	2 cut(s)	501, 558
Cac8I	GCNNGC	3 cut(s)	53, 461, 723
CfoI	GCGC	2 cut(s)	154, 459
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	163, 371
CviAII	CATG	2 cut(s)	205, 276
CviQI	GTAC	2 cut(s)	163, 371
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	5 cut(s)	78, 182, 354, 507, 512
DpnII	GATC	5 cut(s)	76, 180, 352, 505, 510
Eam1104I	CTCTTC	3 cut(s)	8, 570, 667
EarI	CTCTTC	3 cut(s)	8, 570, 667
Ecl136II	GAGCTC	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	451
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	449
EcoRV	GATATC	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	208, 279
FaiI	YATR	8 cut(s)	73, 206, 230, 277, 311, 315, 432, 767
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	2 cut(s)	204, 275
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	248, 455
FokI	GGATG	2 cut(s)	455, 725
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	2 cut(s)	248, 455
FspBI	CTAG	2 cut(s)	482, 778
GlaI	GCGC	2 cut(s)	153, 458
GluI	GCNGC	2 cut(s)	248, 455
HapII	CCGG	5 cut(s)	138, 444, 560, 615, 742
HhaI	GCGC	2 cut(s)	154, 459
Hin1II	CATG	2 cut(s)	208, 279
Hin6I	GCGC	2 cut(s)	152, 457
HinP1I	GCGC	2 cut(s)	152, 457
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	2 cut(s)	89, 332
HpaII	CCGG	5 cut(s)	138, 444, 560, 615, 742
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	510, 671
Hpy188III	TCNNGA	2 cut(s)	10, 652
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	6 cut(s)	142, 208, 502, 530, 614, 771
HpyCH4III	ACNGT	4 cut(s)	553, 610, 640, 692
HpyCH4IV	ACGT	2 cut(s)	41, 165
HpyCH4V	TGCA	4 cut(s)	34, 119, 661, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 52, 97, 460
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	2 cut(s)	41, 165
Hsp92II	CATG	2 cut(s)	208, 279
HspAI	GCGC	2 cut(s)	152, 457
Kzo9I	GATC	5 cut(s)	76, 180, 352, 505, 510
LmnI	GCTCC	3 cut(s)	118, 208, 446
Lsp1109I	GCAGC	1 cut(s)	441
MaeI	CTAG	2 cut(s)	482, 778
MaeII	ACGT	2 cut(s)	41, 165
MaeIII	GTNAC	3 cut(s)	56, 265, 610
MalI	GATC	5 cut(s)	78, 182, 354, 507, 512
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	5 cut(s)	76, 180, 352, 505, 510
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	2 cut(s)	255, 397
MmeI	TCCRAC	1 cut(s)	775
MnlI	CCTC	8 cut(s)	9, 90, 208, 211, 232, 573, 668, 717
MseI	TTAA	1 cut(s)	546
MspI	CCGG	5 cut(s)	138, 444, 560, 615, 742
MspR9I	CCNGG	1 cut(s)	616
MwoI	GCNNNNNNNGC	4 cut(s)	31, 52, 97, 460
NciI	CCSGG	1 cut(s)	616
NdeII	GATC	5 cut(s)	76, 180, 352, 505, 510
NlaIII	CATG	2 cut(s)	208, 279
NlaIV	GGNNCC	3 cut(s)	114, 282, 541
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	249, 456
Ppu21I	YACGTR	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	546
PsiI	TTATAA	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	451
PspN4I	GGNNCC	3 cut(s)	114, 282, 541
PspPI	GGNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	727
RsaI	GTAC	2 cut(s)	164, 372
RsaNI	GTAC	2 cut(s)	163, 371
SacI	GAGCTC	1 cut(s)	451
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	2 cut(s)	248, 455
Sau3AI	GATC	5 cut(s)	76, 180, 352, 505, 510
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	616
SduI	GDGCHC	1 cut(s)	451
SfcI	CTRYAG	2 cut(s)	385, 723
SinI	GGWCC	1 cut(s)	281
Sse9I	AATT	2 cut(s)	255, 397
SsiI	CCGC	2 cut(s)	211, 247
SspI	AATATT	1 cut(s)	627
SspMI	CTAG	2 cut(s)	482, 778
SstI	GAGCTC	1 cut(s)	451
StyD4I	CCNGG	1 cut(s)	614
TaaI	ACNGT	4 cut(s)	553, 610, 640, 692
TaiI	ACGT	2 cut(s)	44, 168
TaqI	TCGA	1 cut(s)	183
TaqII	GACCGA	1 cut(s)	298
TasI	AATT	2 cut(s)	255, 397
TauI	GCSGC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	2 cut(s)	508, 558
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	6 cut(s)	17, 193, 214, 330, 336, 457
TspRI	CASTG	2 cut(s)	508, 558
VpaK11BI	GGWCC	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	546
XspI	CTAG	2 cut(s)	482, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.