Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

13857569 .. 13865493

Gene Structure 7925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1115200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAAGTTTGGGAAGAGATTGAAGCACCAAATGCATGGGACGTTGCCGGGTTGGCGCGACAAGTTCTTGTCGTATAAGGATTTGAAGAAGCTTGTGAAGCTGATTTCTTCAGCTCCCATGTTGTTGGAACAGGCATCAGAGTACGGCAAAACTGAGGCTGAGTTTGTTTACTTGTTGAACAATGAGATTGAGAAGTTTAATGCGTTTTTTATGGAGCAAGAGGAGGATTTCATTATCCGGAATAAGGAATTACAGCAGAGAATTCAAAGAGTAACTGATAAATGGGGGCCAAATGGAAGACAGCCTTCAATGACTATATATGAAGAGGAAATGGGCAAAACTAGGAAGGACATTGTTGATTTCCACGGCGAGATGGTGCTCTTGGTGAACTACAGCAACATCAATTACACAGGGCTGGCTAAGATACTGAAGAAGTATGACAAGAGAACAGGTGGCCTACTGAGATTGCCATTCATTCAAAAGATTTTGGAGCAGCCATTTTTTACAACTGACAATATCTCAAAGCTGGTCAAGGCATGTGAGAGTACCATAGATGCAGTGTTCCCAGTGGAGGAAGAAGAGAGAAAAAGAGAAGTGAAAGAAGCAGTAACGGTCGCCGGAGAAGGAATATTTAGGAACACAGTTGCAGCCCTACTCACCATGCAAGAGATTAGAAGAGCAGGCAGCTCTACTTATAGCCAGTATTCTCTTCCACCTCTCAACTTGGATGCTGACAGCTCTGATCTCACCCAGTTATTCCAACTGAGCCCTCCCATACCTATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

263

Amino Acids

30.21

Weight (kDa)

7.73

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 37	2.2e-08	SPX domain
SPX	PF03105	113 - 160	1.5e-08	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	93, 449
AfaI	GTAC	2 cut(s)	143, 547
AfiI	CCNNNNNNNGG	2 cut(s)	244, 571
AgsI	TTSAA	6 cut(s)	22, 85, 178, 266, 309, 479
AluBI	AGCT	6 cut(s)	91, 100, 113, 526, 687, 738
AluI	AGCT	6 cut(s)	91, 100, 113, 526, 687, 738
Alw21I	GWGCWC	1 cut(s)	381
Aor13HI	TCCGGA	1 cut(s)	237
AoxI	GGCC	2 cut(s)	287, 454
ApeKI	GCWGC	3 cut(s)	493, 647, 684
ApoI	RAATTY	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	3 cut(s)	397, 649, 739
BanII	GRGCYC	1 cut(s)	770
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	505, 659, 696
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	160, 382
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	3 cut(s)	494, 648, 685
BlsI	GCNGC	3 cut(s)	495, 649, 686
Bme1390I	CCNGG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	48
BmrI	ACTGGG	2 cut(s)	560, 745
BmsI	GCATC	3 cut(s)	143, 544, 718
BmuI	ACTGGG	2 cut(s)	560, 745
BpiI	GAAGAC	1 cut(s)	304
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	364
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 571
Bse1I	ACTGG	3 cut(s)	566, 700, 751
BseAI	TCCGGA	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	2 cut(s)	244, 571
BseMII	CTCAG	4 cut(s)	144, 150, 452, 755
BseNI	ACTGG	3 cut(s)	566, 700, 751
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	505, 659, 696
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	2 cut(s)	289, 456
BsiEI	CGRYCG	1 cut(s)	615
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	3 cut(s)	47, 238, 618
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	244, 571
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	289, 456
Bsp1286I	GDGCHC	2 cut(s)	381, 770
Bsp13I	TCCGGA	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	742
BspANI	GGCC	2 cut(s)	289, 456
BspCNI	CTCAG	4 cut(s)	145, 151, 453, 756
BspEI	TCCGGA	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	670
BsrI	ACTGG	3 cut(s)	566, 700, 751
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	1 cut(s)	742
Bst4CI	ACNGT	2 cut(s)	613, 643
Bst6I	CTCTTC	5 cut(s)	8, 318, 573, 670, 714
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	417, 682
BstDEI	CTNAG	5 cut(s)	153, 159, 420, 461, 764
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	1 cut(s)	745
BstMBI	GATC	1 cut(s)	742
BstMCI	CGRYCG	1 cut(s)	615
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 52, 97
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	505, 659, 696
BstV2I	GAAGAC	1 cut(s)	304
BstXI	CCANNNNNNTGG	2 cut(s)	35, 124
BsuRI	GGCC	2 cut(s)	289, 456
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	2 cut(s)	564, 573
Cac8I	GCNNGC	2 cut(s)	417, 682
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	142, 546
CviAII	CATG	4 cut(s)	35, 118, 537, 661
CviQI	GTAC	2 cut(s)	142, 546
DdeI	CTNAG	5 cut(s)	153, 159, 420, 461, 764
DpnI	GATC	1 cut(s)	744
DpnII	GATC	1 cut(s)	742
Eam1104I	CTCTTC	5 cut(s)	8, 318, 573, 670, 714
EarI	CTCTTC	5 cut(s)	8, 318, 573, 670, 714
Eco24I	GRGCYC	1 cut(s)	770
Eco57I	CTGAAG	2 cut(s)	93, 449
EcoRI	GAATTC	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	770
FaeI	CATG	4 cut(s)	38, 121, 540, 664
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	4 cut(s)	34, 117, 536, 660
Fnu4HI	GCNGC	3 cut(s)	494, 648, 685
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	770
Fsp4HI	GCNGC	3 cut(s)	494, 648, 685
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	3 cut(s)	494, 648, 685
HaeIII	GGCC	2 cut(s)	289, 456
HapII	CCGG	3 cut(s)	47, 238, 618
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	4 cut(s)	38, 121, 540, 664
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	89
HpaII	CCGG	3 cut(s)	47, 238, 618
HphI	GGTGA	3 cut(s)	397, 649, 739
Hpy166II	GTNNAC	2 cut(s)	169, 388
Hpy188I	TCNGA	2 cut(s)	139, 742
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	2 cut(s)	169, 388
HpyAV	CCTTC	3 cut(s)	315, 340, 617
HpyCH4III	ACNGT	2 cut(s)	613, 643
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	4 cut(s)	34, 557, 647, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 52, 97
HpyF3I	CTNAG	5 cut(s)	153, 159, 420, 461, 764
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	38, 121, 540, 664
HspAI	GCGC	1 cut(s)	55
Kpn2I	TCCGGA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	742
LguI	GCTCTTC	1 cut(s)	670
LmnI	GCTCC	3 cut(s)	118, 214, 490
Lsp1109I	GCAGC	3 cut(s)	505, 659, 696
LweI	GCATC	3 cut(s)	143, 544, 718
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	271, 607
MalI	GATC	1 cut(s)	744
MboI	GATC	1 cut(s)	742
MhlI	GDGCHC	2 cut(s)	381, 770
MluCI	AATT	3 cut(s)	248, 261, 403
MmeI	TCCRAC	2 cut(s)	105, 784
MnlI	CCTC	7 cut(s)	148, 214, 217, 319, 565, 726, 780
Mph1103I	ATGCAT	1 cut(s)	36
MroI	TCCGGA	1 cut(s)	237
MseI	TTAA	1 cut(s)	198
MspI	CCGG	3 cut(s)	47, 238, 618
MspR9I	CCNGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	31, 52, 97
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	742
NlaIII	CATG	4 cut(s)	38, 121, 540, 664
NlaIV	GGNNCC	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	36
NspI	RCATGY	1 cut(s)	540
PciSI	GCTCTTC	1 cut(s)	670
PkrI	GCNGC	3 cut(s)	495, 649, 686
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	287
RsaI	GTAC	2 cut(s)	143, 547
RsaNI	GTAC	2 cut(s)	142, 546
SapI	GCTCTTC	1 cut(s)	670
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	494, 648, 685
Sau3AI	GATC	1 cut(s)	742
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	2 cut(s)	381, 770
SfaNI	GCATC	3 cut(s)	143, 544, 718
SfcI	CTRYAG	1 cut(s)	391
Sse9I	AATT	3 cut(s)	248, 261, 403
SspI	AATATT	1 cut(s)	630
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	613, 643
TaiI	ACGT	1 cut(s)	44
TasI	AATT	3 cut(s)	248, 261, 403
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	2 cut(s)	564, 573
TseI	GCWGC	3 cut(s)	493, 647, 684
TspDTI	ATGAA	4 cut(s)	17, 220, 336, 463
TspRI	CASTG	2 cut(s)	564, 573
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	540
XspI	CTAG	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.