Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

9652249 .. 9654884

Gene Structure 2636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAAGTTTGGGAAGAGATTGAAGCAGCAAATGCATGGGACGTTGCCGGGTTGGCGCGACAAGTTCTTGTCGTATAAGGATTTGAAGAAGCTTGTGAAGCTGATTTCTTCAGCTCCCATGTTGTTGGAACAGGCATCAGAGTACGGCAAAACTGAGGCTGAGTTTGTTTACTTGTTGAACAATGAGATTGAGAAGTTTAATGCGTTTTTTATGGAGCAAGAGGAGGATTTCATTATCCGGAATAAGGAATTACAGCAGAGAATTCAAAGAGTAATTGATAAATGGGGGCCAAATGGAAGACAGCCTTCAATGACTAAATATGAAGAGGAAATGGGCAAAATTAGGAAGGACATTGTTGATTTCCACGGCGAGATGGTGCTCTTGGTGAACTACAGCAACGTCAATTACACAGGTAGTCCATGGTTGATGAGGCTAATTAATAAGCTCATTCCAATTTTATACAGGTTGGCTAAGATACTGAAGAAGTATGACAAGAGAACAGGTGGCCTACTGAGATTGCCATTCCTTCAAAAGATTTTGGAGCAGCCATTTTTTACAACTGACAATATCTCAAAGCTGGTCAAGGCATGTGAGAGCACCATAGATGCAGTGTTCCCAGTGGAGGAAGAAGAGAGAAAAAGAGAAGTGAAAGAAGCAGTAACGGTCGCCGGAGAAGGAATATTTAGGAACACAGTTGCAGCCCTACTCACCATGCAAGAGATTAGAAGAGCAGGCAGCTCTACTTATAGCCAGTATTCTCTTCCACCTCTCAACTTGGATGCTGATAGCTCTGATCTCACCAAGTTGTTCCAACTGAGCCCTCCCATACCTATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

280

Amino Acids

32.33

Weight (kDa)

9.14

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	93, 500
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	244, 622
AgsI	TTSAA	6 cut(s)	22, 85, 178, 266, 309, 530
AluBI	AGCT	7 cut(s)	91, 100, 113, 445, 577, 738, 789
AluI	AGCT	7 cut(s)	91, 100, 113, 445, 577, 738, 789
Alw21I	GWGCWC	2 cut(s)	381, 599
Aor13HI	TCCGGA	1 cut(s)	237
AoxI	GGCC	2 cut(s)	287, 505
ApeKI	GCWGC	4 cut(s)	25, 544, 698, 735
ApoI	RAATTY	1 cut(s)	261
AseI	ATTAAT	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	3 cut(s)	397, 700, 790
BanII	GRGCYC	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	2 cut(s)	381, 599
BbvI	GCAGC	4 cut(s)	37, 556, 710, 747
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	160, 382
BcnI	CCSGG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	26, 545, 699, 736
BlsI	GCNGC	4 cut(s)	27, 546, 700, 737
Bme1390I	CCNGG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	48
BmrI	ACTGGG	1 cut(s)	611
BmsI	GCATC	3 cut(s)	143, 595, 769
BmuI	ACTGGG	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	304
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	364, 419
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 622
Bse1I	ACTGG	2 cut(s)	617, 751
BseAI	TCCGGA	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	364, 419
BseGI	GGATG	1 cut(s)	784
BseLI	CCNNNNNNNGG	2 cut(s)	244, 622
BseMII	CTCAG	4 cut(s)	144, 150, 503, 806
BseNI	ACTGG	2 cut(s)	617, 751
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	4 cut(s)	37, 556, 710, 747
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	666
BshFI	GGCC	2 cut(s)	289, 507
BsiEI	CGRYCG	1 cut(s)	666
BsiHKAI	GWGCWC	2 cut(s)	381, 599
BsiSI	CCGG	3 cut(s)	47, 238, 669
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	244, 622
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	289, 507
Bsp1286I	GDGCHC	3 cut(s)	381, 599, 821
Bsp13I	TCCGGA	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	793
Bsp19I	CCATGG	1 cut(s)	419
BspANI	GGCC	2 cut(s)	289, 507
BspCNI	CTCAG	4 cut(s)	145, 151, 504, 807
BspEI	TCCGGA	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	617, 751
BssECI	CCNNGG	2 cut(s)	364, 419
BssMI	GATC	1 cut(s)	793
BssT1I	CCWWGG	1 cut(s)	419
Bst4CI	ACNGT	2 cut(s)	664, 694
Bst6I	CTCTTC	5 cut(s)	8, 318, 624, 721, 765
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	5 cut(s)	153, 159, 471, 512, 815
BstDSI	CCRYGG	2 cut(s)	364, 419
BstF5I	GGATG	1 cut(s)	784
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	1 cut(s)	796
BstMBI	GATC	1 cut(s)	793
BstMCI	CGRYCG	1 cut(s)	666
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 52, 97
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	391
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	4 cut(s)	37, 556, 710, 747
BstV2I	GAAGAC	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	289, 507
BtgI	CCRYGG	2 cut(s)	364, 419
BtsCI	GGATG	1 cut(s)	784
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	615, 624
Cac8I	GCNNGC	1 cut(s)	733
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	5 cut(s)	35, 118, 420, 588, 712
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	5 cut(s)	153, 159, 471, 512, 815
DpnI	GATC	1 cut(s)	795
DpnII	GATC	1 cut(s)	793
Eam1104I	CTCTTC	5 cut(s)	8, 318, 624, 721, 765
EarI	CTCTTC	5 cut(s)	8, 318, 624, 721, 765
Eco130I	CCWWGG	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	821
Eco57I	CTGAAG	2 cut(s)	93, 500
EcoRI	GAATTC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	821
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	5 cut(s)	38, 121, 423, 591, 715
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	5 cut(s)	34, 117, 419, 587, 711
Fnu4HI	GCNGC	4 cut(s)	26, 545, 699, 736
FokI	GGATG	1 cut(s)	791
FriOI	GRGCYC	1 cut(s)	821
Fsp4HI	GCNGC	4 cut(s)	26, 545, 699, 736
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	4 cut(s)	26, 545, 699, 736
HaeIII	GGCC	2 cut(s)	289, 507
HapII	CCGG	3 cut(s)	47, 238, 669
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	38, 121, 423, 591, 715
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	89
HpaII	CCGG	3 cut(s)	47, 238, 669
HphI	GGTGA	3 cut(s)	397, 700, 790
Hpy166II	GTNNAC	2 cut(s)	169, 388
Hpy188I	TCNGA	2 cut(s)	139, 793
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	2 cut(s)	169, 388
HpyAV	CCTTC	4 cut(s)	315, 340, 536, 668
HpyCH4III	ACNGT	2 cut(s)	664, 694
HpyCH4IV	ACGT	2 cut(s)	41, 399
HpyCH4V	TGCA	4 cut(s)	34, 608, 698, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 52, 97
HpyF3I	CTNAG	5 cut(s)	153, 159, 471, 512, 815
HpySE526I	ACGT	2 cut(s)	41, 399
Hsp92II	CATG	5 cut(s)	38, 121, 423, 591, 715
HspAI	GCGC	1 cut(s)	55
Kpn2I	TCCGGA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	793
LguI	GCTCTTC	1 cut(s)	721
LmnI	GCTCC	3 cut(s)	118, 214, 541
Lsp1109I	GCAGC	4 cut(s)	37, 556, 710, 747
LweI	GCATC	3 cut(s)	143, 595, 769
MaeII	ACGT	2 cut(s)	41, 399
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	1 cut(s)	795
MboI	GATC	1 cut(s)	793
MhlI	GDGCHC	3 cut(s)	381, 599, 821
MluCI	AATT	7 cut(s)	248, 261, 273, 339, 403, 435, 453
MmeI	TCCRAC	2 cut(s)	105, 835
MnlI	CCTC	8 cut(s)	148, 214, 217, 319, 423, 616, 777, 831
Mph1103I	ATGCAT	1 cut(s)	36
MroI	TCCGGA	1 cut(s)	237
MseI	TTAA	2 cut(s)	198, 438
MspI	CCGG	3 cut(s)	47, 238, 669
MspR9I	CCNGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	31, 52, 97
NciI	CCSGG	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	419
NdeII	GATC	1 cut(s)	793
NlaIII	CATG	5 cut(s)	38, 121, 423, 591, 715
NlaIV	GGNNCC	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	36
NspI	RCATGY	1 cut(s)	591
PciSI	GCTCTTC	1 cut(s)	721
PkrI	GCNGC	4 cut(s)	27, 546, 700, 737
PshBI	ATTAAT	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	721
SaqAI	TTAA	2 cut(s)	198, 438
SatI	GCNGC	4 cut(s)	26, 545, 699, 736
Sau3AI	GATC	1 cut(s)	793
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	3 cut(s)	381, 599, 821
SfaNI	GCATC	3 cut(s)	143, 595, 769
SfcI	CTRYAG	1 cut(s)	391
Sse9I	AATT	7 cut(s)	248, 261, 273, 339, 403, 435, 453
SspI	AATATT	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	664, 694
TaiI	ACGT	2 cut(s)	44, 402
TasI	AATT	7 cut(s)	248, 261, 273, 339, 403, 435, 453
Tru1I	TTAA	2 cut(s)	198, 438
Tru9I	TTAA	2 cut(s)	198, 438
TscAI	CASTG	2 cut(s)	615, 624
TseI	GCWGC	4 cut(s)	25, 544, 698, 735
TspDTI	ATGAA	3 cut(s)	17, 220, 336
TspRI	CASTG	2 cut(s)	615, 624
VspI	ATTAAT	1 cut(s)	438
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	591
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.