Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

27935818 .. 27936042

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0200000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCCATTAAGGTTATGGATGAGATGGAGGATAATGGGGTTGGGGCCAATGAGGTTACTTATGGGGTTATGATTGAAGCTTGTTGCAAGGAAAAGAAGTCAGGTGAAGCGGTTAATTTGCTTAATGATATGGCGGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

74

Amino Acids

8.09

Weight (kDa)

4.68

Isoelectric Point (pI)

22.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 41	5.4e-13	PPR repeat family
PPR_1	PF12854	24 - 55	1.8e-06	PPR repeat
PPR_2	PF13041	28 - 64	7.6e-08	PPR repeat family
PPR	PF01535	30 - 58	1.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	143, 167
AgsI	TTSAA	1 cut(s)	110
AluBI	AGCT	3 cut(s)	28, 113, 189
AluI	AGCT	3 cut(s)	28, 113, 189
Alw21I	GWGCWC	1 cut(s)	191
AoxI	GGCC	2 cut(s)	36, 78
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	149, 220
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BccI	CCATC	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
BseGI	GGATG	2 cut(s)	10, 58
BshFI	GGCC	2 cut(s)	38, 80
BsiHKAI	GWGCWC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	38, 80
Bsp1286I	GDGCHC	1 cut(s)	191
BspACI	CCGC	2 cut(s)	143, 167
BspANI	GGCC	2 cut(s)	38, 80
BspLI	GGNNCC	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	10, 58
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	38, 80
BtsCI	GGATG	2 cut(s)	10, 58
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	78
CviJI	RGCY	5 cut(s)	28, 38, 80, 113, 189
CviKI_1	RGCY	5 cut(s)	28, 38, 80, 113, 189
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	191
FaiI	YATR	7 cut(s)	12, 50, 96, 104, 164, 180, 182
FokI	GGATG	2 cut(s)	17, 65
FriOI	GRGCYC	1 cut(s)	191
GlaI	GCGC	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	38, 80
HhaI	GCGC	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HindIII	AAGCTT	1 cut(s)	111
HphI	GGTGA	2 cut(s)	149, 220
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HspAI	GCGC	1 cut(s)	194
LpnPI	CCDG	3 cut(s)	5, 14, 120
MaeIII	GTNAC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	1 cut(s)	148
MnlI	CCTC	4 cut(s)	28, 55, 79, 168
MseI	TTAA	3 cut(s)	42, 147, 156
MwoI	GCNNNNNNNGC	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	42, 147, 156
Sau96I	GGNCC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	8 cut(s)	30, 48, 90, 115, 139, 179, 191, 210
SgeI	CNNG	7 cut(s)	32, 41, 126, 133, 147, 198, 202
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	2 cut(s)	143, 167
SstI	GAGCTC	1 cut(s)	191
TasI	AATT	1 cut(s)	148
Tru1I	TTAA	3 cut(s)	42, 147, 156
Tru9I	TTAA	3 cut(s)	42, 147, 156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.