Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

29285368 .. 29287911

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG183200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAGTTCGGGAAAAGGCTGAAGCACCAAATGCAGGAGACGTTGCCGAGCTGGCGTGACAAGTTCTTGTCATACAAGGACTTGAAGAAGCTTGTGAGGCTGATTTCTTCGGCTCCGGCGGTGTTGAATGGCAAGTCCGGTAAGGCGGAGGCGGAGTTTGTGTACCTGTTGAACAATGAGATCGACAAGTTCAATGCCTTCTTCATGGAGCAGGAGGAGGACTTCATTATCCAGAATAAGGAATTGCAGCAGAGAATAAAAAAAGTAACTGACACATGGGGACCGAATGGTAGTCATGCTTCAAAGACTATATATGAAGATGAAGTCGGGAAGCTTAGAAAAGACATTGTTGATTTCCACGGTGAAATGGTGCTCTTGGTCAACTACAGCAATATCAACTACACAGGATTGGCCAAAATACTGAAGAAGTTTGACAAGAGAACAGGTGCTCTGCTGCGCTTGCCATTCATCCAAAAAATACTAGAGCAGCCCTTCTTCACCACTGATCTTATCTCAAAGCTTGTCAAGGAATGTGAAGGCACCATCGATGCAGTGTTCCCAGTGGAGGAAGAAGAGGAGAGGAAAAGAGAAGTAAAGGAAGCAATAACAGTTGCAGGGGAAGGAATATTTCGAAACACAGTTGCAGCTCTACTGACAATGCAAGAAATCAGAAGAGGAAGCTCTACTTACAGTCAGTATTCTCTACCACCAATCAACATGCCTGCAGACTCGGATCTCATCCAGTTGGTCCAACTCAACCCTCCCATAGCAATAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

259

Amino Acids

29.66

Weight (kDa)

7.73

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 35	3.3e-07	SPX domain
SPX	PF03105	111 - 159	2.7e-10	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AciI	CCGC	3 cut(s)	119, 146, 152
AclWI	GGATC	1 cut(s)	741
AcoI	YGGCCR	1 cut(s)	411
AcuI	CTGAAG	2 cut(s)	41, 443
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	3 cut(s)	34, 238, 565
AgsI	TTSAA	5 cut(s)	85, 127, 172, 193, 303
AluBI	AGCT	6 cut(s)	51, 91, 334, 520, 647, 681
AluI	AGCT	6 cut(s)	51, 91, 334, 520, 647, 681
Alw21I	GWGCWC	2 cut(s)	375, 451
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	741
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	4 cut(s)	247, 454, 487, 644
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	281, 748
AsuHPI	GGTGA	2 cut(s)	374, 490
AsuII	TTCGAA	1 cut(s)	631
AvaII	GGWCC	2 cut(s)	281, 748
BalI	TGGCCA	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	539
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
Bbv12I	GWGCWC	2 cut(s)	375, 451
BbvI	GCAGC	4 cut(s)	259, 441, 499, 656
BccI	CCATC	1 cut(s)	551
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	482, 778
BfmI	CTRYAG	2 cut(s)	385, 723
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	248, 455, 488, 645
BlsI	GCNGC	4 cut(s)	249, 456, 489, 646
Bme18I	GGWCC	2 cut(s)	281, 748
BmgT120I	GGNCC	2 cut(s)	281, 748
BmiI	GGNNCC	3 cut(s)	114, 282, 541
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	538
BmuI	ACTGGG	1 cut(s)	554
Bpu14I	TTCGAA	1 cut(s)	631
Bsa29I	ATCGAT	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 146, 170, 176
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 238, 565
Bse1I	ACTGG	2 cut(s)	560, 742
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	468, 738
BseLI	CCNNNNNNNGG	3 cut(s)	34, 238, 565
BseNI	ACTGG	2 cut(s)	560, 742
BseRI	GAGGAG	2 cut(s)	230, 590
BseXI	GCAGC	4 cut(s)	259, 441, 499, 656
BshFI	GGCC	1 cut(s)	413
BshNI	GGYRCC	1 cut(s)	539
BshVI	ATCGAT	1 cut(s)	546
BsiHKAI	GWGCWC	2 cut(s)	375, 451
BsiSI	CCGG	2 cut(s)	116, 138
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	3 cut(s)	34, 238, 565
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	631
Bsp1286I	GDGCHC	2 cut(s)	375, 451
Bsp143I	GATC	3 cut(s)	180, 505, 733
BspACI	CCGC	3 cut(s)	119, 146, 152
BspANI	GGCC	1 cut(s)	413
BspDI	ATCGAT	1 cut(s)	546
BspLI	GGNNCC	3 cut(s)	114, 282, 541
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	1 cut(s)	741
BspT104I	TTCGAA	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	539
BsrI	ACTGG	2 cut(s)	560, 742
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	3 cut(s)	180, 505, 733
Bst4CI	ACNGT	4 cut(s)	362, 610, 640, 692
Bst6I	CTCTTC	2 cut(s)	567, 667
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	631
BstC8I	GCNNGC	3 cut(s)	53, 461, 723
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	468, 738
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	3 cut(s)	183, 508, 736
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	180, 505, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 52, 97, 460
BstNSI	RCATGY	1 cut(s)	721
BstSFI	CTRYAG	2 cut(s)	385, 723
BstV1I	GCAGC	4 cut(s)	259, 441, 499, 656
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
Bsu15I	ATCGAT	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	413
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	468, 738
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	3 cut(s)	501, 558, 567
Cac8I	GCNNGC	3 cut(s)	53, 461, 723
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	2 cut(s)	281, 748
ClaI	ATCGAT	1 cut(s)	546
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	4 cut(s)	205, 276, 296, 718
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	3 cut(s)	182, 507, 735
DpnII	GATC	3 cut(s)	180, 505, 733
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	2 cut(s)	567, 667
EarI	CTCTTC	2 cut(s)	567, 667
EciI	GGCGGA	2 cut(s)	161, 167
Eco47I	GGWCC	2 cut(s)	281, 748
Eco57I	CTGAAG	2 cut(s)	41, 443
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	4 cut(s)	208, 279, 299, 721
FaiI	YATR	9 cut(s)	73, 206, 277, 297, 311, 313, 315, 719, 767
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	4 cut(s)	204, 275, 295, 717
Fnu4HI	GCNGC	4 cut(s)	248, 455, 488, 645
FokI	GGATG	2 cut(s)	455, 725
Fsp4HI	GCNGC	4 cut(s)	248, 455, 488, 645
FspBI	CTAG	2 cut(s)	482, 778
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	4 cut(s)	248, 455, 488, 645
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	2 cut(s)	116, 138
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	4 cut(s)	208, 279, 299, 721
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	3 cut(s)	89, 332, 518
HinfI	GANTC	1 cut(s)	728
HpaII	CCGG	2 cut(s)	116, 138
HphI	GGTGA	2 cut(s)	374, 490
Hpy166II	GTNNAC	2 cut(s)	163, 382
Hpy188I	TCNGA	2 cut(s)	671, 733
Hpy188III	TCNNGA	3 cut(s)	10, 232, 328
Hpy8I	GTNNAC	2 cut(s)	163, 382
HpyAV	CCTTC	4 cut(s)	208, 502, 530, 614
HpyCH4III	ACNGT	4 cut(s)	362, 610, 640, 692
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	7 cut(s)	34, 247, 551, 614, 644, 661, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 52, 97, 460
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	4 cut(s)	208, 279, 299, 721
HspAI	GCGC	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	180, 505, 733
LmnI	GCTCC	2 cut(s)	118, 208
Lsp1109I	GCAGC	4 cut(s)	259, 441, 499, 656
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	2 cut(s)	482, 778
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	56, 265
MalI	GATC	3 cut(s)	182, 507, 735
MboI	GATC	3 cut(s)	180, 505, 733
MboII	GAAGA	9 cut(s)	97, 99, 193, 329, 436, 487, 581, 584, 684
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	2 cut(s)	375, 451
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	1 cut(s)	242
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	1 cut(s)	775
MnlI	CCTC	9 cut(s)	90, 142, 208, 211, 559, 568, 573, 668, 771
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	413
MspI	CCGG	2 cut(s)	116, 138
MwoI	GCNNNNNNNGC	4 cut(s)	31, 52, 97, 460
NdeII	GATC	3 cut(s)	180, 505, 733
NlaIII	CATG	4 cut(s)	208, 279, 299, 721
NlaIV	GGNNCC	3 cut(s)	114, 282, 541
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	631
PkrI	GCNGC	4 cut(s)	249, 456, 489, 646
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PspN4I	GGNNCC	3 cut(s)	114, 282, 541
PspPI	GGNCC	2 cut(s)	281, 748
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SatI	GCNGC	4 cut(s)	248, 455, 488, 645
Sau3AI	GATC	3 cut(s)	180, 505, 733
Sau96I	GGNCC	2 cut(s)	281, 748
SchI	GAGTC	1 cut(s)	722
SduI	GDGCHC	2 cut(s)	375, 451
SetI	ASST	9 cut(s)	44, 53, 93, 168, 336, 448, 522, 649, 683
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	2 cut(s)	385, 723
SfuI	TTCGAA	1 cut(s)	631
SinI	GGWCC	2 cut(s)	281, 748
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	3 cut(s)	119, 146, 152
SspI	AATATT	1 cut(s)	627
SspMI	CTAG	2 cut(s)	482, 778
TaaI	ACNGT	4 cut(s)	362, 610, 640, 692
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	183, 546, 631
TaqII	GACCGA	1 cut(s)	298
TasI	AATT	1 cut(s)	242
TscAI	CASTG	3 cut(s)	508, 558, 567
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	4 cut(s)	247, 454, 487, 644
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	6 cut(s)	17, 193, 214, 330, 336, 457
TspRI	CASTG	3 cut(s)	508, 558, 567
VpaK11BI	GGWCC	2 cut(s)	281, 748
XceI	RCATGY	1 cut(s)	721
XspI	CTAG	2 cut(s)	482, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.