Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

42124417 .. 42126714

Gene Structure 2298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57506

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAGTTCGGCAAGAAGCTGAAGCACCAAATACAGGAGTCGTTGCCGGGCTGGCGGGACAAGTTCTTGTCATACAATGACTTGAAGAAGCTTGTGAGGCTGATTTCTTCTTCTCCGGTGGTGTTGAATGGGAATTCTGGTAAGGTGGAGGCGGAGTTTGTGTACCTGTTGAACAATGAGATCGACAAGTTCAATGCCTTCTTCATGGAGCAGGAGGAGAACTTCATTATCCGGAACGAGCCTTCGAACACTATATATGAAGATGAAGTGGGGCAGCTTAGAAAAGACATTGTTGATTTCCACGGCGAAATGGTGCTCTTGGTCAACTATAGCAACATCAATTACACAGGATTGGCCAAAATACTGAAGAAGTATGACAAGAGAACAGGATCTCTGCTGCGCTTGCCATTTATCCAAAAAATACTAGAGCAGCCCTTCCTCACCACTGATCTGATCTCAAAGCTTGTGAAGGAATGTGAAAGCACCATTAATGCAGTGTTTCCGGTGGAGGAAGAAGAGGAGAGGAAAAGAGAAGTAAAGGAAGCGATAACAGTTGCCGGGGAAGGAATATTTAGAAACACAGTTGCCGCTCTATTGACAATGCAAGAAATCAGAAAAGGAAGCTCTACTTACAGTCAGTATTCTCTACCACCAATCAACTTGCCTGTAGACTCGGATCTCATCCAGTTAGTTCAACTCAACCCTCCCACAGCAATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

240

Amino Acids

27.52

Weight (kDa)

5.64

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 35	9.3e-07	SPX domain
SPX	PF03105	92 - 140	7e-10	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	669
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	3 cut(s)	55, 152, 588
AclWI	GGATC	2 cut(s)	397, 684
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	2 cut(s)	41, 386
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	5 cut(s)	85, 127, 172, 193, 695
AluBI	AGCT	5 cut(s)	19, 91, 277, 463, 624
AluI	AGCT	5 cut(s)	19, 91, 277, 463, 624
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	397, 684
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	3 cut(s)	274, 397, 430
ApoI	RAATTY	1 cut(s)	133
AseI	ATTAAT	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	402
AsuC2I	CCSGG	2 cut(s)	48, 559
AsuHPI	GGTGA	1 cut(s)	433
AsuII	TTCGAA	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	286, 384, 442
BceAI	ACGGC	1 cut(s)	319
BcnI	CCSGG	2 cut(s)	48, 559
BfaI	CTAG	2 cut(s)	425, 721
BfmI	CTRYAG	2 cut(s)	328, 666
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	4 cut(s)	275, 398, 431, 588
BlsI	GCNGC	4 cut(s)	276, 399, 432, 589
Bme1390I	CCNGG	2 cut(s)	48, 559
BmrFI	CCNGG	2 cut(s)	48, 559
Bpu14I	TTCGAA	1 cut(s)	245
BpuMI	CCSGG	2 cut(s)	48, 559
BsaJI	CCNNGG	2 cut(s)	301, 558
BsaWI	WCCGGW	3 cut(s)	115, 231, 502
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 146, 170, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	685
BseAI	TCCGGA	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	301, 558
BseGI	GGATG	1 cut(s)	681
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	2 cut(s)	230, 533
BseXI	GCAGC	3 cut(s)	286, 384, 442
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	5 cut(s)	47, 116, 232, 503, 558
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	5 cut(s)	180, 389, 448, 453, 676
BspACI	CCGC	3 cut(s)	55, 152, 588
BspANI	GGCC	1 cut(s)	356
BspEI	TCCGGA	1 cut(s)	231
BspPI	GGATC	2 cut(s)	397, 684
BspT104I	TTCGAA	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	2 cut(s)	301, 558
BssMI	GATC	5 cut(s)	180, 389, 448, 453, 676
Bst4CI	ACNGT	3 cut(s)	553, 583, 635
Bst6I	CTCTTC	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	53, 404
BstDEI	CTNAG	1 cut(s)	278
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	5 cut(s)	183, 392, 451, 456, 679
BstMBI	GATC	5 cut(s)	180, 389, 448, 453, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 97, 403
BstSCI	CCNGG	2 cut(s)	46, 557
BstSFI	CTRYAG	2 cut(s)	328, 666
BstV1I	GCAGC	3 cut(s)	286, 384, 442
BstX2I	RGATCY	2 cut(s)	389, 676
BstYI	RGATCY	2 cut(s)	389, 676
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	681
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	444, 501
Cac8I	GCNNGC	2 cut(s)	53, 404
CfoI	GCGC	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	205
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	5 cut(s)	182, 391, 450, 455, 678
DpnII	GATC	5 cut(s)	180, 389, 448, 453, 676
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
EciI	GGCGGA	1 cut(s)	167
Eco57I	CTGAAG	2 cut(s)	41, 386
EcoRI	GAATTC	1 cut(s)	133
FaeI	CATG	1 cut(s)	208
FaiI	YATR	7 cut(s)	73, 206, 254, 256, 258, 330, 375
FalI	AAGNNNNNCTT	2 cut(s)	613, 645
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	204
FauI	CCCGC	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	275, 398, 431, 588
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	4 cut(s)	275, 398, 431, 588
FspBI	CTAG	2 cut(s)	425, 721
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	4 cut(s)	275, 398, 431, 588
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	5 cut(s)	47, 116, 232, 503, 558
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	2 cut(s)	89, 461
HinfI	GANTC	2 cut(s)	38, 671
HpaII	CCGG	5 cut(s)	47, 116, 232, 503, 558
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	3 cut(s)	163, 325, 670
Hpy188I	TCNGA	3 cut(s)	453, 614, 676
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	3 cut(s)	163, 325, 670
HpyAV	CCTTC	5 cut(s)	208, 252, 445, 463, 557
HpyCH4III	ACNGT	3 cut(s)	553, 583, 635
HpyCH4V	TGCA	2 cut(s)	494, 604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 97, 403
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	1 cut(s)	400
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	180, 389, 448, 453, 676
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	3 cut(s)	286, 384, 442
MaeI	CTAG	2 cut(s)	425, 721
MalI	GATC	5 cut(s)	182, 391, 450, 455, 678
MbiI	CCGCTC	1 cut(s)	590
MboI	GATC	5 cut(s)	180, 389, 448, 453, 676
MboII	GAAGA	8 cut(s)	97, 99, 102, 193, 272, 379, 524, 527
MflI	RGATCY	2 cut(s)	389, 676
MhlI	GDGCHC	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	2 cut(s)	133, 340
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	2 cut(s)	47, 665
MnlI	CCTC	8 cut(s)	90, 142, 208, 449, 502, 511, 516, 714
Mox20I	TGGCCA	1 cut(s)	356
MroI	TCCGGA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	5 cut(s)	47, 116, 232, 503, 558
MspR9I	CCNGG	2 cut(s)	48, 559
MwoI	GCNNNNNNNGC	3 cut(s)	52, 97, 403
NciI	CCSGG	2 cut(s)	48, 559
NdeII	GATC	5 cut(s)	180, 389, 448, 453, 676
NlaIII	CATG	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	245
PkrI	GCNGC	4 cut(s)	276, 399, 432, 589
PleI	GAGTC	2 cut(s)	46, 665
PpsI	GAGTC	2 cut(s)	46, 665
PshBI	ATTAAT	1 cut(s)	489
PsuI	RGATCY	2 cut(s)	389, 676
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	4 cut(s)	275, 398, 431, 588
Sau3AI	GATC	5 cut(s)	180, 389, 448, 453, 676
SchI	GAGTC	2 cut(s)	47, 665
ScrFI	CCNGG	2 cut(s)	48, 559
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	7 cut(s)	21, 93, 147, 168, 279, 465, 626
SfcI	CTRYAG	2 cut(s)	328, 666
SfuI	TTCGAA	1 cut(s)	245
Sse9I	AATT	2 cut(s)	133, 340
SsiI	CCGC	3 cut(s)	55, 152, 588
SspI	AATATT	2 cut(s)	570, 717
SspMI	CTAG	2 cut(s)	425, 721
StyD4I	CCNGG	2 cut(s)	46, 557
TaaI	ACNGT	3 cut(s)	553, 583, 635
TaqI	TCGA	2 cut(s)	183, 245
TasI	AATT	2 cut(s)	133, 340
TauI	GCSGC	1 cut(s)	590
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	2 cut(s)	451, 501
TseI	GCWGC	3 cut(s)	274, 397, 430
TspDTI	ATGAA	5 cut(s)	17, 193, 214, 273, 279
TspRI	CASTG	2 cut(s)	451, 501
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	669
XspI	CTAG	2 cut(s)	425, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.