Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

41437811 .. 41440111

Gene Structure 2301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG217600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAGTTCGGCAAGAAGCTGAAGCACCAAATACAGGAGTCGTTGCCGGGCTGGCGGGACAAGTTCTTGTCATACAATGACTTGAAGAAGCTTGTGAGGCTGATTTCTTCTTCTCCGGTGGTGTTGAATGGGAATTCTGGTAAGGCGGAGGCGGAGTTTGTGTACCTGTTGAACAATGAGATCGACAAGTTCAATGCCTTCTTCATGGAGCAGGAGGAGAACTTCATTATCCGGAACGAGGAATTGCAGCGGAGAATAAAAAAGGTAACTGATACATGGGGACCCAATGGTAGTCAGCCTTCAAACACTATATATGAAGATGAAGTGGGGCAGCTTAGAAAAGACATTGTTGATTTCCACGGCGAAATGGTGCTCTTGGTCAACTATAGCAACATCAATTACACAGGATTGGCCAAAATACTGAAGAAGTATGACAAGAGAACAGGATCTCTGCTGCGCTTGCCATTTATCCAAAAAATACTAGAGCAGCCCTTCCTCACCACTGATCTGATATCAAAGCTTGTGAAGGAATGTGAAAGCACCATTAATGCAGTGTTTCCGGTGGAGGAAGAAGAGGAGAGGAAAAGAGAAGTAAAGGAAGCGATAACAGTTGCCGGGGAAGGAATATTTAGAAACACAGTTGCCGCTCTATTGACAATGCAAGAAATCAGAAAAGGAAGCTCTACTTACAGTCAGTATTCTCTACCACCAATCATCTTGCCTGTAGATTCGGATCTCACCCAGTTAGTTCAACTCAACCCTCCCACAGCAATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

259

Amino Acids

29.68

Weight (kDa)

6.24

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 35	1.1e-06	SPX domain
SPX	PF03105	101 - 159	4.3e-10	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	647
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	5 cut(s)	55, 146, 152, 250, 645
AclWI	GGATC	2 cut(s)	454, 741
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	2 cut(s)	41, 443
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	34, 238
AgsI	TTSAA	6 cut(s)	85, 127, 172, 193, 303, 752
AluBI	AGCT	5 cut(s)	19, 91, 334, 520, 681
AluI	AGCT	5 cut(s)	19, 91, 334, 520, 681
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	454, 741
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	4 cut(s)	247, 331, 454, 487
ApoI	RAATTY	1 cut(s)	133
AseI	ATTAAT	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	2 cut(s)	48, 616
AsuHPI	GGTGA	2 cut(s)	490, 730
AvaII	GGWCC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	413
BarI	GAAGNNNNNNTAC	2 cut(s)	283, 315
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	259, 343, 441, 499
BceAI	ACGGC	1 cut(s)	376
BcnI	CCSGG	2 cut(s)	48, 616
BfaI	CTAG	2 cut(s)	482, 778
BfmI	CTRYAG	2 cut(s)	385, 723
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	5 cut(s)	248, 332, 455, 488, 645
BlsI	GCNGC	5 cut(s)	249, 333, 456, 489, 646
Bme1390I	CCNGG	2 cut(s)	48, 616
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	282, 283
BmrFI	CCNGG	2 cut(s)	48, 616
BmrI	ACTGGG	1 cut(s)	736
BmuI	ACTGGG	1 cut(s)	736
BpuMI	CCSGG	2 cut(s)	48, 616
BsaBI	GATNNNNATC	1 cut(s)	732
BsaJI	CCNNGG	2 cut(s)	358, 615
BsaWI	WCCGGW	3 cut(s)	115, 231, 559
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 146, 170, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 238
Bse1I	ACTGG	1 cut(s)	742
Bse8I	GATNNNNATC	1 cut(s)	732
BseAI	TCCGGA	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	358, 615
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	2 cut(s)	34, 238
BseNI	ACTGG	1 cut(s)	742
BseRI	GAGGAG	2 cut(s)	230, 590
BseXI	GCAGC	4 cut(s)	259, 343, 441, 499
BshFI	GGCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	5 cut(s)	47, 116, 232, 560, 615
BslFI	GGGAC	2 cut(s)	71, 294
BslI	CCNNNNNNNGG	2 cut(s)	34, 238
BsmFI	GGGAC	2 cut(s)	71, 294
BsnI	GGCC	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	180, 446, 505, 733
BspACI	CCGC	5 cut(s)	55, 146, 152, 250, 645
BspANI	GGCC	1 cut(s)	413
BspEI	TCCGGA	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	282, 283
BspPI	GGATC	2 cut(s)	454, 741
BsrBI	CCGCTC	1 cut(s)	647
BsrI	ACTGG	1 cut(s)	742
BssECI	CCNNGG	2 cut(s)	358, 615
BssMI	GATC	4 cut(s)	180, 446, 505, 733
Bst4CI	ACNGT	3 cut(s)	610, 640, 692
Bst6I	CTCTTC	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	53, 461
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	4 cut(s)	183, 449, 508, 736
BstMBI	GATC	4 cut(s)	180, 446, 505, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 97, 460
BstSCI	CCNGG	2 cut(s)	46, 614
BstSFI	CTRYAG	2 cut(s)	385, 723
BstV1I	GCAGC	4 cut(s)	259, 343, 441, 499
BstX2I	RGATCY	2 cut(s)	446, 733
BstYI	RGATCY	2 cut(s)	446, 733
BsuRI	GGCC	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	501, 558
Cac8I	GCNNGC	2 cut(s)	53, 461
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	205, 276
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	4 cut(s)	182, 448, 507, 735
DpnII	GATC	4 cut(s)	180, 446, 505, 733
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
EciI	GGCGGA	2 cut(s)	161, 167
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	2 cut(s)	41, 443
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	513
FaeI	CATG	2 cut(s)	208, 279
FaiI	YATR	8 cut(s)	73, 206, 277, 311, 313, 315, 387, 432
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FaqI	GGGAC	2 cut(s)	71, 294
FatI	CATG	2 cut(s)	204, 275
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	5 cut(s)	248, 332, 455, 488, 645
Fsp4HI	GCNGC	5 cut(s)	248, 332, 455, 488, 645
FspBI	CTAG	2 cut(s)	482, 778
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	5 cut(s)	248, 332, 455, 488, 645
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	5 cut(s)	47, 116, 232, 560, 615
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	2 cut(s)	208, 279
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	2 cut(s)	89, 518
HinfI	GANTC	2 cut(s)	38, 728
HpaII	CCGG	5 cut(s)	47, 116, 232, 560, 615
HphI	GGTGA	2 cut(s)	490, 730
Hpy166II	GTNNAC	2 cut(s)	163, 382
Hpy188I	TCNGA	3 cut(s)	510, 671, 733
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	163, 382
HpyAV	CCTTC	5 cut(s)	208, 309, 502, 520, 614
HpyCH4III	ACNGT	3 cut(s)	610, 640, 692
HpyCH4V	TGCA	3 cut(s)	247, 551, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 97, 460
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	208, 279
HspAI	GCGC	1 cut(s)	457
KflI	GGGWCCC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	180, 446, 505, 733
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	4 cut(s)	259, 343, 441, 499
MaeI	CTAG	2 cut(s)	482, 778
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	4 cut(s)	182, 448, 507, 735
MbiI	CCGCTC	1 cut(s)	647
MboI	GATC	4 cut(s)	180, 446, 505, 733
MboII	GAAGA	8 cut(s)	97, 99, 102, 193, 329, 436, 581, 584
MflI	RGATCY	2 cut(s)	446, 733
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	3 cut(s)	133, 242, 397
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	9 cut(s)	90, 142, 208, 232, 506, 559, 568, 573, 771
Mox20I	TGGCCA	1 cut(s)	413
MroI	TCCGGA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	5 cut(s)	47, 116, 232, 560, 615
MspR9I	CCNGG	2 cut(s)	48, 616
MwoI	GCNNNNNNNGC	3 cut(s)	52, 97, 460
NciI	CCSGG	2 cut(s)	48, 616
NdeII	GATC	4 cut(s)	180, 446, 505, 733
NlaIII	CATG	2 cut(s)	208, 279
NlaIV	GGNNCC	2 cut(s)	282, 283
PfeI	GAWTC	1 cut(s)	728
PkrI	GCNGC	5 cut(s)	249, 333, 456, 489, 646
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	282, 283
PspPI	GGNCC	1 cut(s)	281
PspPPI	RGGWCCY	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	446, 733
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	5 cut(s)	248, 332, 455, 488, 645
Sau3AI	GATC	4 cut(s)	180, 446, 505, 733
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	2 cut(s)	48, 616
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	7 cut(s)	21, 93, 168, 267, 336, 522, 683
SfcI	CTRYAG	2 cut(s)	385, 723
SinI	GGWCC	1 cut(s)	281
Sse9I	AATT	3 cut(s)	133, 242, 397
SsiI	CCGC	5 cut(s)	55, 146, 152, 250, 645
SspI	AATATT	2 cut(s)	627, 774
SspMI	CTAG	2 cut(s)	482, 778
StyD4I	CCNGG	2 cut(s)	46, 614
TaaI	ACNGT	3 cut(s)	610, 640, 692
TaqI	TCGA	1 cut(s)	183
TasI	AATT	3 cut(s)	133, 242, 397
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	2 cut(s)	508, 558
TseI	GCWGC	4 cut(s)	247, 331, 454, 487
TspDTI	ATGAA	5 cut(s)	17, 193, 214, 330, 336
TspRI	CASTG	2 cut(s)	508, 558
VpaK11BI	GGWCC	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	1 cut(s)	133
XspI	CTAG	2 cut(s)	482, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.