Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007102

Physical Location & Seq

Genomic Coordinates Forward (+)

19473754 .. 19476645

Gene Structure 2892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G137300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCTCCCTAATATTCTACCAACCTTCCTCCTCATAAAAACCTTCCCAATTCTCCTCCTACCCACTACCAAACCCTTCACTCTTTTACACTCTCAAATTTTGTCTCATAATTTTTTTTTTTCTTCTGGTTTTTGGTTCTTTGGGTCTGAAAATACAACTAAATTTTGTAACAAGACCAAGTTTTCAATGAAGTTTGGGAAGAGATTGAAGCAGCAAATGCAGGGGACTTTGCCCGGTTGGCGCGATAAGTTCTTGTCGTATAAGCATTTGAAGAAGATTGTGAAGCTGATTGCTTCTGCAGCGCCCATGTTGTTGAATGGATCATTGGAGTATGGCAAGGCTGAGGCTGAGTTTGTGTACCTCTTGAACAATGAGATTGACAAGTTCAATGCTTTCTTTGTGGAGCAGGAGGAGGATTTCATTATCCGGAATAAGGAATTACAGCAGAGAATTCAAAAGGTGATTGATAGATGGGGTTCGAATGGAAGCCAGCCTTCAAAGGCTATATATGAAGAAGAAGTGGGAAAAGTTAGGAAAGACATTGTTGATTTCCACGGCGAAATGGTGCTCTTGGTGAACTACAGCAATATCAATTACACAGGATTGGCTAAAATATTGAAGAAGTATGACAAGAGAACAGGTGCTCTACTGCGCTTGCCATTCATTCAAAAAATTCTGGAGGAGCCCTTTTTTACAACTGATAACATCTCAAAGCTTGTCAAGGAATGCGAAAACACCATAGATGCAGTGTTCCCAGTGGAGGAAGAAGAAGAAGAGAGAAAAAGAGAAGTGAAAGAAGCCATAACAGTTGCTGGAGAAGGAATATTTAGGAACACAGTTGCAGCTCTGCTGACCATGCAAGAGATTAGAAGAGGCAGCTCCACTTACAGCCAGTATTCTCTGCCACCTCTCAATTTGCCTGCAGACAATGATCTCATCCAGTTGTTCCAACTCAGCCCTCCTATACCTATTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010646 GO:0010647 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071496 GO:0080040 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

326

Amino Acids

37.43

Weight (kDa)

8.8

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45130
fragaria_vesca	FvH4_7g11060 FvH4_7g11061
malus_domestica	MD07G1115200.v1.1
prunus_persica	Prupe.2G137300_v2.0.a1
pyrus_communis	pycom07g10050
rosa_chinensis	RchiOBHm_Chr1g0349081 RchiOBHm_Chr1g0349091
rosa_laevigata	RLG00000028607 RLG00000028608
rosa_multiflora	Rmu_sc0000943.1_g000002 Rmu_sc0008324.1_g000001 Rmu_sc0012100.1_g000002
rosa_roxburghii	Rroxscaffold_4G00306130 Rroxscaffold_4G00306200
rosa_rugosa	Rorug01G0199900 Rorug01G0200000
rosa_samantha	Rh1AG217600 Rh1AG217700 Rh1BG183000 Rh1BG183200 Rh1CG202100 Rh1DG213000
rosa_wichuraiana	Rw1G018490 Rw1G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	243
AccIII	TCCGGA	1 cut(s)	426
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	4 cut(s)	96, 161, 450, 672
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	433, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	4 cut(s)	286, 715, 845, 879
AluI	AGCT	4 cut(s)	286, 715, 845, 879
Alw21I	GWGCWC	2 cut(s)	570, 646
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	812
Aor13HI	TCCGGA	1 cut(s)	426
ApeKI	GCWGC	4 cut(s)	211, 299, 842, 876
ApoI	RAATTY	4 cut(s)	96, 161, 450, 672
AspLEI	GCGC	3 cut(s)	243, 304, 654
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	2 cut(s)	472, 586
AsuII	TTCGAA	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	687
Bbv12I	GWGCWC	2 cut(s)	570, 646
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	223, 311, 854, 888
BccI	CCATC	1 cut(s)	465
BceAI	ACGGC	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	108
BfmI	CTRYAG	3 cut(s)	297, 580, 921
BfoI	RGCGCY	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	238
BisI	GCNGC	4 cut(s)	212, 300, 843, 877
BlsI	GCNGC	4 cut(s)	213, 301, 844, 878
Bme1390I	CCNGG	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	684
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	1 cut(s)	733
BmuI	ACTGGG	1 cut(s)	749
BpmI	CTGGAG	2 cut(s)	698, 834
Bpu10I	CCTNAGC	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	553
BsaWI	WCCGGW	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 760
Bse1I	ACTGG	3 cut(s)	755, 892, 940
BseAI	TCCGGA	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	1 cut(s)	936
BseLI	CCNNNNNNNGG	2 cut(s)	433, 760
BseMII	CTCAG	3 cut(s)	333, 339, 967
BseNI	ACTGG	3 cut(s)	755, 892, 940
BseRI	GAGGAG	4 cut(s)	20, 44, 425, 695
BseXI	GCAGC	4 cut(s)	223, 311, 854, 888
Bsh1236I	CGCG	1 cut(s)	243
BsiHKAI	GWGCWC	2 cut(s)	570, 646
BsiSI	CCGG	2 cut(s)	234, 427
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	433, 760
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	731
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	3 cut(s)	570, 646, 687
Bsp13I	TCCGGA	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	320, 931
BspCNI	CTCAG	3 cut(s)	334, 340, 966
BspEI	TCCGGA	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	684
BspMAI	CTGCAG	2 cut(s)	301, 925
BspPI	GGATC	1 cut(s)	328
BspT104I	TTCGAA	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	755, 892, 940
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	2 cut(s)	320, 931
Bst4CI	ACNGT	2 cut(s)	808, 838
Bst6I	CTCTTC	3 cut(s)	194, 768, 865
BstAPI	GCANNNNNTGC	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	491, 656, 921
BstDEI	CTNAG	3 cut(s)	342, 348, 953
BstDSI	CCRYGG	1 cut(s)	553
BstF5I	GGATG	1 cut(s)	936
BstFNI	CGCG	1 cut(s)	243
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	3 cut(s)	243, 304, 654
BstKTI	GATC	2 cut(s)	323, 934
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	320, 931
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 238, 299, 856
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	3 cut(s)	297, 580, 921
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	4 cut(s)	223, 311, 854, 888
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	1 cut(s)	936
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	2 cut(s)	753, 762
Cac8I	GCNNGC	3 cut(s)	491, 656, 921
CaiI	CAGNNNCTG	1 cut(s)	812
CfoI	GCGC	3 cut(s)	243, 304, 654
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	307, 856
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	3 cut(s)	342, 348, 953
DpnI	GATC	2 cut(s)	322, 933
DpnII	GATC	2 cut(s)	320, 931
Eam1104I	CTCTTC	3 cut(s)	194, 768, 865
EarI	CTCTTC	3 cut(s)	194, 768, 865
Eco24I	GRGCYC	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	687
FaeI	CATG	2 cut(s)	310, 859
FalI	AAGNNNNNCTT	2 cut(s)	478, 510
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	306, 855
Fnu4HI	GCNGC	4 cut(s)	212, 300, 843, 877
FokI	GGATG	1 cut(s)	923
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	4 cut(s)	212, 300, 843, 877
GlaI	GCGC	3 cut(s)	242, 303, 653
GluI	GCNGC	4 cut(s)	212, 300, 843, 877
GsuI	CTGGAG	2 cut(s)	698, 834
HaeII	RGCGCY	1 cut(s)	305
HapII	CCGG	2 cut(s)	234, 427
HhaI	GCGC	3 cut(s)	243, 304, 654
Hin1II	CATG	2 cut(s)	310, 859
Hin6I	GCGC	3 cut(s)	241, 302, 652
HinP1I	GCGC	3 cut(s)	241, 302, 652
HindIII	AAGCTT	1 cut(s)	713
HpaII	CCGG	2 cut(s)	234, 427
HphI	GGTGA	2 cut(s)	472, 586
Hpy166II	GTNNAC	2 cut(s)	358, 577
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	364, 427, 677
Hpy8I	GTNNAC	2 cut(s)	358, 577
HpyAV	CCTTC	5 cut(s)	34, 52, 85, 504, 812
HpyCH4III	ACNGT	2 cut(s)	808, 838
HpyCH4V	TGCA	6 cut(s)	220, 299, 746, 842, 859, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 238, 299, 856
HpyF3I	CTNAG	3 cut(s)	342, 348, 953
Hsp92II	CATG	2 cut(s)	310, 859
HspAI	GCGC	3 cut(s)	241, 302, 652
Kpn2I	TCCGGA	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	320, 931
LmnI	GCTCC	4 cut(s)	9, 403, 682, 884
Lsp1109I	GCAGC	4 cut(s)	223, 311, 854, 888
LweI	GCATC	1 cut(s)	733
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	2 cut(s)	322, 933
MboI	GATC	2 cut(s)	320, 931
MhlI	GDGCHC	3 cut(s)	570, 646, 687
MluCI	AATT	9 cut(s)	48, 96, 109, 161, 437, 450, 592, 672, 913
MmeI	TCCRAC	1 cut(s)	973
MroI	TCCGGA	1 cut(s)	426
MspI	CCGG	2 cut(s)	234, 427
MspR9I	CCNGG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	731
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	4 cut(s)	217, 238, 299, 856
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	320, 931
NlaIII	CATG	2 cut(s)	310, 859
NlaIV	GGNNCC	1 cut(s)	684
NspV	TTCGAA	1 cut(s)	479
PctI	GAATGC	1 cut(s)	731
PkrI	GCNGC	4 cut(s)	213, 301, 844, 878
PspN4I	GGNNCC	1 cut(s)	684
PstI	CTGCAG	2 cut(s)	301, 925
PstNI	CAGNNNCTG	1 cut(s)	812
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SatI	GCNGC	4 cut(s)	212, 300, 843, 877
Sau3AI	GATC	2 cut(s)	320, 931
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	3 cut(s)	570, 646, 687
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	3 cut(s)	297, 580, 921
SfuI	TTCGAA	1 cut(s)	479
Sse9I	AATT	9 cut(s)	48, 96, 109, 161, 437, 450, 592, 672, 913
SspI	AATATT	3 cut(s)	13, 615, 825
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	808, 838
TaqI	TCGA	1 cut(s)	479
TasI	AATT	9 cut(s)	48, 96, 109, 161, 437, 450, 592, 672, 913
TscAI	CASTG	2 cut(s)	753, 762
TseI	GCWGC	4 cut(s)	211, 299, 842, 876
TspDTI	ATGAA	4 cut(s)	203, 409, 525, 652
TspRI	CASTG	2 cut(s)	753, 762
XapI	RAATTY	4 cut(s)	96, 161, 450, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.