Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006183

Physical Location & Seq

Genomic Coordinates Reverse (-)

18749352 .. 18752866

Gene Structure 3515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGAGTTTCCTCAGAGGTATAATTGATTCGTTTAGCTCTATTCTCAACGAAGAATCTAAGAAAGATCCTAGTGTTTCATCATCATCAACTTCTTCTGAGTCCATGAATGGTATCGATGGAGTTCCGGTTACTAACGAACGAATTGCGTATAAGCTTAAAGGATACTTCGATTTAGCGAAAGAGGAAATCGCTAAAGGGGTTAGAGCAGAAGAGTGGGGTTTACATGATGATGCTCTTCTTCATTATAGAAATGCTCAAAGGATCATGAATGAAGCTACTTCTACTCCTTCTCCTTCGTATATTAGTTCCAGTGAAAAGGAGAAGGTGAGATCGTACCGAGAGAAGATTTCAAATTGGCAAAATCAAGTATCTGAGAGATTGCAAGCTTTGGGTAAGCGTACAGGTGTTGGAATGTCTGAGAATAAGAGGACGGTGGCATATCCTTCTTCAGCTTCAGTTTCCTCTACAGCGTCAAGGTATAGGAAAACTTTATCGCAAAAGACTCCGGTTGCCAGAGGTGGCGTTGCAACGCCAAGGAACCCTAAAGATGCTGCTGCAAGCCCAAAACCTGTGAAAGAATCTGGAAATGTCTATGATGATAAGTTGGTTGAGATGATAAATACAACAATAGTGGATAGAAGCCCATCTGTGAAATGGGATGATGTCGCTGGACTTAATGGAGCTAAACAAGCTTTGTTGGAGATGGTAATTTTACCGGCAAAACGAAGAGATTTGTTCACTGGTCTCCGAAGACCAGCGAGAGGTCTGCTTCTCTTTGGGCCACCTGGCAATGGGAAAACAATGCTTGCCAAGGCAGTCGCTTCTGAGTCACAGGCAACATTTTTCAATGTCTCAGCATCTTCTTTGACATCAAAATGGGTGGGTGAGGCTGAAAAGCTAGTTAAAACGCTGTTTCAAGTTGCAATATCCAGACAACCGTCTGTTATATTTATGGATGAAATAGATAGTATAATGTCAACAAGGTCAACCAGTGAGAATGAAGCAAGCAGAAGGCTGAAATCAGAATTTCTTATCCAGTTTGATGGTGTGACTTCTAATCCTGATGATTTGGTGATTATCATTGGAGCTACTAACAAGCCACAGGAGTTGGATGATGCAGTGCTTAGGAGATTGGTGAAGAGAATATATGTACCATTGCCGGATTCCAACGTCAGAAAACTACTTTTTAAAACTAAATTAAAGTGCCAGCCTCACTCGTTATCCGATGGCGACATTGATAAAATCGTCAAAGAAACCGAAGGATACTCAGGAAGCGATCTCCAAGCATTGTGTGAAGAAGCTGCAATGATGCCAATCAGAGAACTCGGTGCAAATATTCTAACGATCCAAGCAAATAAAGTAAGATCTCTACGATATGATGATTTTCGGAAATCAATGGCAGTGATCAGACCAAGCTTGAGTAAAAGCAAATGGGAAGAGCTTGAACGTTGGAACTCAGAGTTTGGCTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

491

Amino Acids

54.39

Weight (kDa)

9.33

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	252 - 382	1.5e-39	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	407 - 440	2.9e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45500 AT2G45500 AT2G45500 AT2G45500 AT2G45500
fragaria_vesca	FvH4_7g12180 FvH4_7g12180
malus_domestica	MD02G1200800.v1.1
prunus_persica	Prupe.2G148300_v2.0.a1 Prupe.2G148300_v2.0.a1 Prupe.2G148300_v2.0.a1
pyrus_communis	pycom02g16400
rosa_chinensis	RchiOBHm_Chr1g0350931
rosa_laevigata	RLG00000028440
rosa_multiflora	Rmu_sc0002665.1_g000019 Rmu_sc0006458.1_g000018
rosa_roxburghii	Rroxscaffold_4G00304290
rosa_rugosa	Rorug01G0075600 Rorug01G0215400 Rorug01G0215400 Rorug06G0023300
rosa_samantha	Rh1AG230100 Rh1BG075200 Rh1BG200000 Rh1CG214500 Rh1DG227800
rosa_wichuraiana	Rw1G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	1447
AclWI	GGATC	3 cut(s)	59, 269, 1339
AcsI	RAATTY	1 cut(s)	1025
AcuI	CTGAAG	2 cut(s)	432, 438
AfaI	GTAC	3 cut(s)	335, 400, 1152
AfiI	CCNNNNNNNGG	2 cut(s)	761, 791
AgsI	TTSAA	4 cut(s)	351, 847, 917, 1445
AjnI	CCWGG	1 cut(s)	784
Alw26I	GTCTC	2 cut(s)	749, 856
AlwI	GGATC	3 cut(s)	59, 269, 1339
AoxI	GGCC	1 cut(s)	779
ApeKI	GCWGC	3 cut(s)	551, 554, 1301
ApoI	RAATTY	1 cut(s)	1025
AspS9I	GGNCC	1 cut(s)	779
AsuHPI	GGTGA	4 cut(s)	337, 896, 1084, 1147
BbsI	GAAGAC	1 cut(s)	757
BbvI	GCAGC	3 cut(s)	538, 541, 1288
BccI	CCATC	5 cut(s)	110, 652, 697, 1037, 1220
BcgI	CGANNNNNNTGC	4 cut(s)	125, 159, 748, 782
BciT130I	CCWGG	1 cut(s)	786
BciVI	GTATCC	2 cut(s)	155, 1256
BclI	TGATCA	1 cut(s)	1404
BcoDI	GTCTC	2 cut(s)	749, 856
BfaI	CTAG	2 cut(s)	69, 899
BfmI	CTRYAG	1 cut(s)	465
BfuI	GTATCC	2 cut(s)	155, 1256
BglII	AGATCT	1 cut(s)	1364
BisI	GCNGC	3 cut(s)	552, 555, 1302
BlsI	GCNGC	3 cut(s)	553, 556, 1303
Bme1390I	CCNGG	1 cut(s)	786
BmgT120I	GGNCC	1 cut(s)	779
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	5 cut(s)	220, 538, 866, 1105, 1299
BoxI	GACNNNNGTC	1 cut(s)	937
BpiI	GAAGAC	1 cut(s)	757
BplI	GAGNNNNNCTC	1 cut(s)	1451
Bpu10I	CCTNAGC	1 cut(s)	1124
BpuEI	CTTGAG	1 cut(s)	1438
Bsa29I	ATCGAT	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	1313
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	533, 810
BsaWI	WCCGGW	2 cut(s)	124, 505
BsaXI	ACNNNNNCTCC	6 cut(s)	111, 141, 268, 274, 298, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	761, 791
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	4 cut(s)	309, 745, 990, 1036
Bse3DI	GCAATG	3 cut(s)	796, 1154, 1311
Bse8I	GATNNNNATC	1 cut(s)	1313
BseBI	CCWGG	1 cut(s)	786
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	533, 810
BseGI	GGATG	3 cut(s)	664, 961, 1117
BseJI	GATNNNNATC	1 cut(s)	1313
BseLI	CCNNNNNNNGG	2 cut(s)	761, 791
BseMI	GCAATG	3 cut(s)	796, 1154, 1311
BseMII	CTCAG	8 cut(s)	25, 87, 363, 408, 816, 867, 1281, 1470
BseNI	ACTGG	4 cut(s)	309, 745, 990, 1036
BseXI	GCAGC	3 cut(s)	538, 541, 1288
BshFI	GGCC	1 cut(s)	781
BshVI	ATCGAT	1 cut(s)	114
BsiSI	CCGG	4 cut(s)	125, 506, 716, 1160
BslI	CCNNNNNNNGG	2 cut(s)	761, 791
BsmAI	GTCTC	2 cut(s)	749, 856
BsnI	GGCC	1 cut(s)	781
Bso31I	GGTCTC	1 cut(s)	749
Bsp143I	GATC	7 cut(s)	64, 261, 329, 1276, 1344, 1364, 1404
BspANI	GGCC	1 cut(s)	781
BspCNI	CTCAG	8 cut(s)	24, 88, 364, 409, 817, 866, 1280, 1469
BspDI	ATCGAT	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	539
BspPI	GGATC	3 cut(s)	59, 269, 1339
BspQI	GCTCTTC	2 cut(s)	240, 1431
BspTNI	GGTCTC	1 cut(s)	749
BsrDI	GCAATG	3 cut(s)	796, 1154, 1311
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	4 cut(s)	309, 745, 990, 1036
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	2 cut(s)	533, 810
BssMI	GATC	7 cut(s)	64, 261, 329, 1276, 1344, 1364, 1404
BssT1I	CCWWGG	2 cut(s)	533, 810
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	2 cut(s)	433, 939
Bst6I	CTCTTC	5 cut(s)	204, 240, 721, 1133, 1431
BstC8I	GCNNGC	5 cut(s)	384, 559, 807, 1006, 1208
BstF5I	GGATG	3 cut(s)	664, 961, 1117
BstKTI	GATC	7 cut(s)	67, 264, 332, 1279, 1347, 1367, 1407
BstMAI	GTCTC	2 cut(s)	749, 856
BstMBI	GATC	7 cut(s)	64, 261, 329, 1276, 1344, 1364, 1404
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstNI	CCWGG	1 cut(s)	786
BstPAI	GACNNNNGTC	1 cut(s)	937
BstSCI	CCNGG	1 cut(s)	784
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	3 cut(s)	538, 541, 1288
BstV2I	GAAGAC	1 cut(s)	757
BstX2I	RGATCY	2 cut(s)	64, 1364
BstXI	CCANNNNNNTGG	1 cut(s)	1043
BstYI	RGATCY	2 cut(s)	64, 1364
Bsu15I	ATCGAT	1 cut(s)	114
BsuI	GTATCC	2 cut(s)	155, 1256
BsuRI	GGCC	1 cut(s)	781
BsuTUI	ATCGAT	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	664, 961, 1117
BtsI	GCAGTG	2 cut(s)	1125, 1407
BtsIMutI	CAGTG	5 cut(s)	316, 738, 997, 1125, 1407
Cac8I	GCNNGC	5 cut(s)	384, 559, 807, 1006, 1208
CciI	TCATGA	1 cut(s)	264
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	1 cut(s)	779
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	334, 399, 1151
CspCI	CAANNNNNGTGG	6 cut(s)	612, 647, 861, 896, 1089, 1124
CviAII	CATG	3 cut(s)	103, 224, 265
CviQI	GTAC	3 cut(s)	334, 399, 1151
DpnI	GATC	7 cut(s)	66, 263, 331, 1278, 1346, 1366, 1406
DpnII	GATC	7 cut(s)	64, 261, 329, 1276, 1344, 1364, 1404
DraI	TTTAAA	1 cut(s)	1189
Eam1104I	CTCTTC	5 cut(s)	204, 240, 721, 1133, 1431
EarI	CTCTTC	5 cut(s)	204, 240, 721, 1133, 1431
Eco130I	CCWWGG	2 cut(s)	533, 810
Eco31I	GGTCTC	1 cut(s)	749
Eco57I	CTGAAG	2 cut(s)	432, 438
EcoRII	CCWGG	1 cut(s)	784
EcoT14I	CCWWGG	2 cut(s)	533, 810
ErhI	CCWWGG	2 cut(s)	533, 810
FaeI	CATG	3 cut(s)	106, 227, 268
FatI	CATG	3 cut(s)	102, 223, 264
FbaI	TGATCA	1 cut(s)	1404
Fnu4HI	GCNGC	3 cut(s)	552, 555, 1302
FokI	GGATG	3 cut(s)	671, 968, 1124
Fsp4HI	GCNGC	3 cut(s)	552, 555, 1302
FspBI	CTAG	2 cut(s)	69, 899
GluI	GCNGC	3 cut(s)	552, 555, 1302
HaeIII	GGCC	1 cut(s)	781
HapII	CCGG	4 cut(s)	125, 506, 716, 1160
HgaI	GACGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	106, 227, 268
HincII	GTYRAC	2 cut(s)	978, 987
HindII	GTYRAC	2 cut(s)	978, 987
HindIII	AAGCTT	4 cut(s)	152, 384, 690, 1414
HinfI	GANTC	7 cut(s)	26, 53, 98, 502, 578, 827, 1163
HpaII	CCGG	4 cut(s)	125, 506, 716, 1160
HphI	GGTGA	4 cut(s)	337, 896, 1084, 1147
Hpy166II	GTNNAC	4 cut(s)	221, 738, 978, 987
Hpy188III	TCNNGA	5 cut(s)	265, 582, 930, 1061, 1269
Hpy8I	GTNNAC	4 cut(s)	221, 738, 978, 987
HpyAV	CCTTC	6 cut(s)	297, 303, 316, 453, 1005, 1253
HpyCH4III	ACNGT	2 cut(s)	433, 939
HpyCH4IV	ACGT	2 cut(s)	1170, 1447
HpyCH4V	TGCA	7 cut(s)	382, 527, 557, 923, 1118, 1304, 1331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpySE526I	ACGT	2 cut(s)	1170, 1447
Hsp92II	CATG	3 cut(s)	106, 227, 268
Ksp22I	TGATCA	1 cut(s)	1404
Kzo9I	GATC	7 cut(s)	64, 261, 329, 1276, 1344, 1364, 1404
LguI	GCTCTTC	2 cut(s)	240, 1431
LmnI	GCTCC	2 cut(s)	680, 1085
Lsp1109I	GCAGC	3 cut(s)	538, 541, 1288
LweI	GCATC	5 cut(s)	220, 538, 866, 1105, 1299
MaeI	CTAG	2 cut(s)	69, 899
MaeII	ACGT	2 cut(s)	1170, 1447
MaeIII	GTNAC	3 cut(s)	127, 828, 1048
MalI	GATC	7 cut(s)	66, 263, 331, 1278, 1346, 1366, 1406
MboI	GATC	7 cut(s)	64, 261, 329, 1276, 1344, 1364, 1404
MflI	RGATCY	2 cut(s)	64, 1364
MluCI	AATT	7 cut(s)	21, 141, 352, 708, 1025, 1196, 1471
MlyI	GAGTC	3 cut(s)	107, 496, 836
MmeI	TCCRAC	5 cut(s)	388, 678, 1089, 1191, 1430
MnlI	CCTC	9 cut(s)	8, 20, 175, 420, 472, 509, 755, 880, 1221
MseI	TTAA	5 cut(s)	156, 675, 903, 1188, 1199
MslI	CAYNNNNRTG	2 cut(s)	228, 874
MspI	CCGG	4 cut(s)	125, 506, 716, 1160
MspR9I	CCNGG	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	786
MwoI	GCNNNNNNNGC	1 cut(s)	689
NdeII	GATC	7 cut(s)	64, 261, 329, 1276, 1344, 1364, 1404
NlaIII	CATG	3 cut(s)	106, 227, 268
NlaIV	GGNNCC	1 cut(s)	539
NmuCI	GTSAC	2 cut(s)	828, 1048
PagI	TCATGA	1 cut(s)	264
PciSI	GCTCTTC	2 cut(s)	240, 1431
PfeI	GAWTC	4 cut(s)	26, 53, 578, 1163
PkrI	GCNGC	3 cut(s)	553, 556, 1303
PleI	GAGTC	3 cut(s)	106, 496, 835
PpsI	GAGTC	3 cut(s)	106, 496, 835
PshAI	GACNNNNGTC	1 cut(s)	937
Psp1406I	AACGTT	1 cut(s)	1447
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	1 cut(s)	779
PsuI	RGATCY	2 cut(s)	64, 1364
RsaI	GTAC	3 cut(s)	335, 400, 1152
RsaNI	GTAC	3 cut(s)	334, 399, 1151
RseI	CAYNNNNRTG	2 cut(s)	228, 874
SapI	GCTCTTC	2 cut(s)	240, 1431
SaqAI	TTAA	5 cut(s)	156, 675, 903, 1188, 1199
SatI	GCNGC	3 cut(s)	552, 555, 1302
Sau3AI	GATC	7 cut(s)	64, 261, 329, 1276, 1344, 1364, 1404
Sau96I	GGNCC	1 cut(s)	779
SchI	GAGTC	3 cut(s)	107, 496, 836
ScrFI	CCNGG	1 cut(s)	786
SfaNI	GCATC	5 cut(s)	220, 538, 866, 1105, 1299
SfcI	CTRYAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	2 cut(s)	228, 874
SmlI	CTYRAG	1 cut(s)	1417
SmoI	CTYRAG	1 cut(s)	1417
Sse9I	AATT	7 cut(s)	21, 141, 352, 708, 1025, 1196, 1471
SspI	AATATT	1 cut(s)	1336
SspMI	CTAG	2 cut(s)	69, 899
StyD4I	CCNGG	1 cut(s)	784
StyI	CCWWGG	2 cut(s)	533, 810
TaaI	ACNGT	2 cut(s)	433, 939
TaiI	ACGT	2 cut(s)	1173, 1450
TaqI	TCGA	2 cut(s)	114, 168
TasI	AATT	7 cut(s)	21, 141, 352, 708, 1025, 1196, 1471
TfiI	GAWTC	4 cut(s)	26, 53, 578, 1163
Tru1I	TTAA	5 cut(s)	156, 675, 903, 1188, 1199
Tru9I	TTAA	5 cut(s)	156, 675, 903, 1188, 1199
TscAI	CASTG	5 cut(s)	316, 745, 997, 1125, 1407
TseFI	GTSAC	2 cut(s)	828, 1048
TseI	GCWGC	3 cut(s)	551, 554, 1301
Tsp45I	GTSAC	2 cut(s)	828, 1048
TspDTI	ATGAA	7 cut(s)	66, 119, 230, 281, 285, 972, 1014
TspRI	CASTG	5 cut(s)	316, 745, 997, 1125, 1407
XapI	RAATTY	1 cut(s)	1025
XcmI	CCANNNNNNNNNTGG	1 cut(s)	651
XspI	CTAG	2 cut(s)	69, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.