Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006183

Physical Location & Seq

Genomic Coordinates Forward (+)

12283371 .. 12285796

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0075600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGATATGGCAGGGGATACAAGAGAAGATGTTGTGATTGTGGGTGGTGGGATTTCAGGCCTCGCCACTGCTCTTGCTCTTCACAGAAAGGGCATAAGAAGCTTGGTCCTAGAAAAATCAAAGACTTTACAAGCCACCGGAGGTATCGTTGTGCATTCTAATGGTTGGCGTGCCCTTGAACAGCTCGGTGTAGCCTCATATCTTAGACAAACTGCTGATCCTATACTATCGGGACAATTCTCTTCACTTGATAATGGCAAGCCACAAGAAATGCCCATTTCGAAAGAAGAAATGCGATGTGTGAGAAGGACTGATATGGTTAATATTTTGGCTCAAAACCTGCCACTCAACACTGTACGTTATGGCTCCAACGTACTTTCTATTGAGTTGGATCCTGTAACATCTTATCCAGTTCTTCAACTTCAAAATGGAACTAGTTTAAACGCCAAGGTTGTGATCGGATGCGACGGAGTGAACTCCAAGATAACAAATCTGATTGGGGTGAAGGCCCCAAATAGACTCAATGTAATGGCAGCAAGAAGCATTACAATATATCCAAATGGCCATAAATTCGGCAGTGAGTTTAAGATGATAAAAAAAGGTGATGTTACGGTCGGAGTAATACCCATGACCACCAACCAGGTTTATTGGTTCATCACTGGAAAATATTTTTCACAAGAAGGTTTCAAGATCTCCAAAAGTTCGAAATCGATTATGAACTTCTCAACTGAGTCAGTGAAGGATTTTCCTAGTAGCATTAAAGAGATGGTCAACAATTGCTGGCTAGAGTGTTTGCATTTCTCAGAGTACATCAAATACCGATCACCATGGAACATACTATGCACACACTTTCGGGTAGGAACAGTGACAGTTGCAGGAGATGCCTTGCATGCAATGACTCCGTTCATTGCTCAGGGTGGCTCAGCCGCTTTGGAAGACGCAGTTGTCCTTGCTAGGTGCTTCGCACGAAAGGCTGTCGTCGGTGGTCCAGGTGAAATAGGAAGCAAACTTATGGTAGAGCAAGCATTTGATGAATACCTAAAAGAGCGGAAAACACGACTTCTAAGACTTACTATCGAATCAACCCTACTCGGAAAGATGGAAGAAACTTCATCAAAGCTCATCAAGCTCTTATGTATTGTGCTCATAGTGGTCCTATTTCGCAACTCGTTTGCTCACGCTCGCTATGACTGTGGCAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

401

Amino Acids

44.05

Weight (kDa)

9.27

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	10 - 322	5.3e-28	FAD binding domain
DAO	PF01266	10 - 45	1.5e-07	FAD dependent oxidoreductase
Lycopene_cycl	PF05834	10 - 170	5.4e-07	Lycopene cyclase protein
FAD_binding_2	PF00890	10 - 43	9.7e-06	FAD binding domain
NAD_binding_8	PF13450	13 - 43	4.9e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45500 AT2G45500 AT2G45500 AT2G45500 AT2G45500
fragaria_vesca	FvH4_7g12180 FvH4_7g12180
malus_domestica	MD02G1200800.v1.1
prunus_persica	Prupe.2G148300_v2.0.a1 Prupe.2G148300_v2.0.a1 Prupe.2G148300_v2.0.a1
pyrus_communis	pycom02g16400
rosa_chinensis	RchiOBHm_Chr1g0350931
rosa_laevigata	RLG00000028440
rosa_multiflora	Rmu_sc0002665.1_g000019 Rmu_sc0006458.1_g000018
rosa_roxburghii	Rroxscaffold_4G00304290
rosa_rugosa	Rorug01G0075600 Rorug01G0215400 Rorug01G0215400 Rorug06G0023300
rosa_samantha	Rh1AG230100 Rh1BG075200 Rh1BG200000 Rh1CG214500 Rh1DG227800
rosa_wichuraiana	Rw1G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	944
Acc36I	ACCTGC	1 cut(s)	348
AccBSI	CCGCTC	1 cut(s)	1048
AciI	CCGC	2 cut(s)	927, 1048
AclWI	GGATC	3 cut(s)	212, 386, 399
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	569
AfaI	GTAC	3 cut(s)	357, 375, 809
AgsI	TTSAA	4 cut(s)	179, 419, 425, 688
AhlI	ACTAGT	1 cut(s)	434
AjnI	CCWGG	2 cut(s)	639, 988
AluBI	AGCT	4 cut(s)	102, 184, 1120, 1129
AluI	AGCT	4 cut(s)	102, 184, 1120, 1129
Alw21I	GWGCWC	1 cut(s)	1146
AlwI	GGATC	3 cut(s)	212, 386, 399
AoxI	GGCC	3 cut(s)	58, 507, 562
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	1 cut(s)	569
AspS9I	GGNCC	4 cut(s)	106, 508, 986, 1153
AsuHPI	GGTGA	4 cut(s)	514, 614, 816, 1004
AsuII	TTCGAA	2 cut(s)	281, 704
AvaII	GGWCC	3 cut(s)	106, 986, 1153
BaeGI	GKGCMC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	564
BamHI	GGATCC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	942
Bbv12I	GWGCWC	1 cut(s)	1146
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	2 cut(s)	760, 1093
BciT130I	CCWGG	2 cut(s)	641, 990
BciVI	GTATCC	1 cut(s)	10
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	5 cut(s)	110, 435, 750, 785, 954
BfuAI	ACCTGC	1 cut(s)	348
BfuI	GTATCC	1 cut(s)	10
BglII	AGATCT	1 cut(s)	690
BisI	GCNGC	2 cut(s)	534, 927
BlpI	GCTNAGC	1 cut(s)	922
BlsI	GCNGC	2 cut(s)	535, 928
Bme1390I	CCNGG	2 cut(s)	641, 990
Bme18I	GGWCC	3 cut(s)	106, 986, 1153
BmgT120I	GGNCC	4 cut(s)	106, 508, 986, 1153
BmiI	GGNNCC	3 cut(s)	367, 393, 510
BmrFI	CCNGG	2 cut(s)	641, 990
BmsI	GCATC	2 cut(s)	452, 871
BpiI	GAAGAC	1 cut(s)	942
Bpu10I	CCTNAGC	1 cut(s)	912
Bpu1102I	GCTNAGC	1 cut(s)	922
Bpu14I	TTCGAA	2 cut(s)	281, 704
Bsa29I	ATCGAT	1 cut(s)	710
BsaJI	CCNNGG	2 cut(s)	447, 827
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bse1I	ACTGG	2 cut(s)	410, 664
Bse3DI	GCAATG	2 cut(s)	900, 906
BseBI	CCWGG	2 cut(s)	641, 990
BseCI	ATCGAT	1 cut(s)	710
BseDI	CCNNGG	2 cut(s)	447, 827
BseGI	GGATG	1 cut(s)	467
BseMI	GCAATG	2 cut(s)	900, 906
BseMII	CTCAG	4 cut(s)	720, 816, 926, 936
BseNI	ACTGG	2 cut(s)	410, 664
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	545
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	3 cut(s)	60, 509, 564
BshVI	ATCGAT	1 cut(s)	710
BsiEI	CGRYCG	1 cut(s)	615
BsiHKAI	GWGCWC	1 cut(s)	1146
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	60, 509, 564
Bsp119I	TTCGAA	2 cut(s)	281, 704
Bsp1286I	GDGCHC	2 cut(s)	175, 1146
Bsp143I	GATC	5 cut(s)	217, 391, 456, 690, 821
Bsp1720I	GCTNAGC	1 cut(s)	922
Bsp19I	CCATGG	1 cut(s)	827
BspACI	CCGC	2 cut(s)	927, 1048
BspANI	GGCC	3 cut(s)	60, 509, 564
BspCNI	CTCAG	4 cut(s)	721, 815, 925, 935
BspDI	ATCGAT	1 cut(s)	710
BspLI	GGNNCC	3 cut(s)	367, 393, 510
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	212, 386, 399
BspQI	GCTCTTC	1 cut(s)	84
BspT104I	TTCGAA	2 cut(s)	281, 704
BsrBI	CCGCTC	1 cut(s)	1048
BsrDI	GCAATG	2 cut(s)	900, 906
BsrI	ACTGG	2 cut(s)	410, 664
BssECI	CCNNGG	2 cut(s)	447, 827
BssMI	GATC	5 cut(s)	217, 391, 456, 690, 821
BssT1I	CCWWGG	2 cut(s)	447, 827
Bst2UI	CCWGG	2 cut(s)	641, 990
Bst4CI	ACNGT	5 cut(s)	355, 613, 865, 871, 1193
Bst6I	CTCTTC	2 cut(s)	84, 247
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstBI	TTCGAA	2 cut(s)	281, 704
BstC8I	GCNNGC	6 cut(s)	171, 260, 782, 891, 1023, 1183
BstDEI	CTNAG	6 cut(s)	203, 729, 802, 912, 922, 1064
BstDSI	CCRYGG	1 cut(s)	827
BstF5I	GGATG	1 cut(s)	467
BstKTI	GATC	5 cut(s)	220, 394, 459, 693, 824
BstMBI	GATC	5 cut(s)	217, 391, 456, 690, 821
BstMCI	CGRYCG	1 cut(s)	615
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 881, 890, 971, 1126
BstNI	CCWGG	2 cut(s)	641, 990
BstNSI	RCATGY	1 cut(s)	893
BstSCI	CCNGG	2 cut(s)	639, 988
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	545
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	2 cut(s)	391, 690
BstYI	RGATCY	2 cut(s)	391, 690
Bsu15I	ATCGAT	1 cut(s)	710
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	3 cut(s)	60, 509, 564
BsuTUI	ATCGAT	1 cut(s)	710
BtgI	CCRYGG	1 cut(s)	827
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	467
BtsI	GCAGTG	2 cut(s)	66, 583
BtsIMutI	CAGTG	6 cut(s)	66, 351, 583, 657, 741, 870
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	6 cut(s)	171, 260, 782, 891, 1023, 1183
Cfr13I	GGNCC	4 cut(s)	106, 508, 986, 1153
ClaI	ATCGAT	1 cut(s)	710
CseI	GACGC	1 cut(s)	947
CsiI	ACCWGGT	1 cut(s)	639
Csp6I	GTAC	3 cut(s)	356, 374, 808
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	3 cut(s)	628, 828, 890
CviQI	GTAC	3 cut(s)	356, 374, 808
DdeI	CTNAG	6 cut(s)	203, 729, 802, 912, 922, 1064
DpnI	GATC	5 cut(s)	219, 393, 458, 692, 823
DpnII	GATC	5 cut(s)	217, 391, 456, 690, 821
DraI	TTTAAA	1 cut(s)	441
DrdI	GACNNNNNNGTC	1 cut(s)	944
DseDI	GACNNNNNNGTC	1 cut(s)	944
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	2 cut(s)	84, 247
EarI	CTCTTC	2 cut(s)	84, 247
Eco130I	CCWWGG	2 cut(s)	447, 827
Eco147I	AGGCCT	1 cut(s)	60
Eco47I	GGWCC	3 cut(s)	106, 986, 1153
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRII	CCWGG	2 cut(s)	639, 988
EcoT14I	CCWWGG	2 cut(s)	447, 827
ErhI	CCWWGG	2 cut(s)	447, 827
FaeI	CATG	3 cut(s)	631, 831, 893
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	3 cut(s)	627, 827, 889
Fnu4HI	GCNGC	2 cut(s)	534, 927
FokI	GGATG	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	534, 927
FspBI	CTAG	5 cut(s)	110, 435, 750, 785, 954
GluI	GCNGC	2 cut(s)	534, 927
HaeIII	GGCC	3 cut(s)	60, 509, 564
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	947
Hin1II	CATG	3 cut(s)	631, 831, 893
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	100
HinfI	GANTC	4 cut(s)	519, 731, 898, 1079
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	4 cut(s)	514, 614, 816, 1004
Hpy166II	GTNNAC	2 cut(s)	475, 772
Hpy188I	TCNGA	5 cut(s)	461, 495, 617, 805, 1094
Hpy188III	TCNNGA	2 cut(s)	231, 688
Hpy8I	GTNNAC	2 cut(s)	475, 772
Hpy99I	CGWCG	2 cut(s)	470, 983
HpyAV	CCTTC	4 cut(s)	300, 499, 674, 733
HpyCH4III	ACNGT	5 cut(s)	355, 613, 865, 871, 1193
HpyCH4IV	ACGT	2 cut(s)	358, 372
HpyCH4V	TGCA	6 cut(s)	154, 796, 843, 875, 889, 893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 881, 890, 971, 1126
HpyF3I	CTNAG	6 cut(s)	203, 729, 802, 912, 922, 1064
HpySE526I	ACGT	2 cut(s)	358, 372
Hsp92II	CATG	3 cut(s)	631, 831, 893
Kzo9I	GATC	5 cut(s)	217, 391, 456, 690, 821
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	2 cut(s)	452, 871
MabI	ACCWGGT	1 cut(s)	639
MaeI	CTAG	5 cut(s)	110, 435, 750, 785, 954
MaeII	ACGT	2 cut(s)	358, 372
MaeIII	GTNAC	3 cut(s)	397, 607, 865
MalI	GATC	5 cut(s)	219, 393, 458, 692, 823
MbiI	CCGCTC	1 cut(s)	1048
MboI	GATC	5 cut(s)	217, 391, 456, 690, 821
MboII	GAAGA	7 cut(s)	38, 71, 234, 299, 407, 947, 1115
MfeI	CAATTG	1 cut(s)	775
MflI	RGATCY	2 cut(s)	391, 690
MhlI	GDGCHC	2 cut(s)	175, 1146
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	3 cut(s)	236, 569, 775
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	3 cut(s)	513, 740, 892
MmeI	TCCRAC	3 cut(s)	369, 393, 595
MnlI	CCTC	3 cut(s)	71, 134, 205
Mox20I	TGGCCA	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	4 cut(s)	321, 440, 585, 759
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	564
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	641, 990
MssI	GTTTAAAC	1 cut(s)	441
MunI	CAATTG	1 cut(s)	775
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	2 cut(s)	641, 990
MwoI	GCNNNNNNNGC	5 cut(s)	99, 881, 890, 971, 1126
NcoI	CCATGG	1 cut(s)	827
NdeII	GATC	5 cut(s)	217, 391, 456, 690, 821
NlaIII	CATG	3 cut(s)	631, 831, 893
NlaIV	GGNNCC	3 cut(s)	367, 393, 510
NmuCI	GTSAC	1 cut(s)	865
NspI	RCATGY	1 cut(s)	893
NspV	TTCGAA	2 cut(s)	281, 704
PaeI	GCATGC	1 cut(s)	893
PceI	AGGCCT	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	84
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	1079
PkrI	GCNGC	2 cut(s)	535, 928
PleI	GAGTC	3 cut(s)	513, 739, 892
PmeI	GTTTAAAC	1 cut(s)	441
PpsI	GAGTC	3 cut(s)	513, 739, 892
Psp6I	CCWGG	2 cut(s)	639, 988
PspGI	CCWGG	2 cut(s)	639, 988
PspN4I	GGNNCC	3 cut(s)	367, 393, 510
PspPI	GGNCC	4 cut(s)	106, 508, 986, 1153
PsuI	RGATCY	2 cut(s)	391, 690
RsaI	GTAC	3 cut(s)	357, 375, 809
RsaNI	GTAC	3 cut(s)	356, 374, 808
RseI	CAYNNNNRTG	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	321, 440, 585, 759
SatI	GCNGC	2 cut(s)	534, 927
Sau3AI	GATC	5 cut(s)	217, 391, 456, 690, 821
Sau96I	GGNCC	4 cut(s)	106, 508, 986, 1153
SchI	GAGTC	3 cut(s)	513, 740, 892
ScrFI	CCNGG	2 cut(s)	641, 990
SduI	GDGCHC	2 cut(s)	175, 1146
SexAI	ACCWGGT	1 cut(s)	639
SfaNI	GCATC	2 cut(s)	452, 871
SfuI	TTCGAA	2 cut(s)	281, 704
SinI	GGWCC	3 cut(s)	106, 986, 1153
SmiMI	CAYNNNNRTG	1 cut(s)	159
SpeI	ACTAGT	1 cut(s)	434
SphI	GCATGC	1 cut(s)	893
Sse9I	AATT	3 cut(s)	236, 569, 775
SseBI	AGGCCT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	927, 1048
SspI	AATATT	2 cut(s)	325, 668
SspMI	CTAG	5 cut(s)	110, 435, 750, 785, 954
StuI	AGGCCT	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	639, 988
StyI	CCWWGG	2 cut(s)	447, 827
TaaI	ACNGT	5 cut(s)	355, 613, 865, 871, 1193
TaiI	ACGT	2 cut(s)	361, 375
TaqI	TCGA	4 cut(s)	281, 704, 710, 1077
TasI	AATT	3 cut(s)	236, 569, 775
TatI	WGTACW	1 cut(s)	807
TauI	GCSGC	1 cut(s)	929
TfiI	GAWTC	1 cut(s)	1079
Tru1I	TTAA	4 cut(s)	321, 440, 585, 759
Tru9I	TTAA	4 cut(s)	321, 440, 585, 759
TscAI	CASTG	6 cut(s)	73, 358, 583, 664, 741, 870
TseFI	GTSAC	1 cut(s)	865
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	865
TspDTI	ATGAA	5 cut(s)	643, 731, 895, 1047, 1101
TspGWI	ACGGA	2 cut(s)	483, 891
TspRI	CASTG	6 cut(s)	73, 358, 583, 664, 741, 870
VpaK11BI	GGWCC	3 cut(s)	106, 986, 1153
XapI	RAATTY	1 cut(s)	569
XceI	RCATGY	1 cut(s)	893
XspI	CTAG	5 cut(s)	110, 435, 750, 785, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.