MD02G1200800.v1.1

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
19812077 .. 19817993
5917 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1200800.v1.1.491

Sequence Viewer

Length: 1593 bp
ATGACTTTACAGGGAATTTTCCGCAGTCTCGCGGAAACGGTAAGAATAAAAGCCCTCTCTCTCTCTCTCTCCTTCCTCCTCAACCCAATTAATCGGCATGTATTCGTTTCAAGCATGAGCTTCCTTAAAGGACTTATCGATTCTTTCGGCTCCGTCTTCTCCGCCGCCTCCTCCGACGAGTCTCACCCTAACTCCAGTCCTCCGCCCGATTCCTCCACCATGGACGGCGTAGCTGGCCCATCTTCCGTCTCCAACGAGCGTGTCGCATACAAGCTCAAGGGCTATTTCGAATTGGCGAAGGATGAGATCGCCAAGGCCGTTAGGGCTGAAGAGTGGGGGTTAGTCGATGACGCCATTGCTCACTACAGCAACGCCCAGAGGGTTCTCGTCGAGGCCACCTCCACTCCCGTGCCTTCCTATATCACCCTCAGTGAGAGAGAGAAGGTGAAATCTTATCGTCAGAAAATATCAAAGTGGCAGGGTCAAGTTTCTGAAAGATTACAAACTTTAGGCAGACGAACAGGTGGTGCGCCCATGAGCAAAAACACCTTAGCTCATGCACAAACTGCTTCAGTTGCATCACCAACATCAACTGCCAGAAAACATGTGTTACCCCAGTCTCCACGTGCCACTACAAACAGACCAGAAATGAGGAATCAGGCCAATAACATTGTAAGCTCAAAACCTGTGCAACAGTCTGGTGGTGGTTATGATGAAAAATTGGTTGAAATGATAAATAGTGCTATAGTGGATAGAAGCCCTTCCGTTAAATGGGAAGATGTTGCTGGTCTTGAGAAGGTGAAACAAACTTTGATGGAGATGATTATTTTACCCACAAAAAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTTTGTTTGGTCCACCTGGAAATGGAAAAACCATGCTTGCAAAGGCAGTTGCTTCAGAGTCAGAGGCAACATTTTTTAATGTCTCTGCATCTTCCCTGACTTCAAAATGGGTGGGAGAGGCTGAAAAGCTTGTACGAACTCTCTTCATGGTTGCTATATCCAGACAGCCATCAGTAATTTTCATGGATGAAATTGATAGTGTCATGTCAACAAGGCAGGCAAACGAAAATGACGCAAGCAGAAGGTTGAAGTCAGAGTTTCTGATACAGTTTGACGGAGTGACCTCTAATCCTAATGATCTGGTAATTGTGATCGGTGCTACGAATAAGCCTCAAGAACTGGATGACGCAGTTCTTAGAAGACTGGTAAAGAGAGTGTACATACCATTACCAGATTTAACTGCAAGGAGAGTTCTCCTAAGGCACAAACTCAAGGGCCAAGCATTTTCCTTACCAAGTGGAGATGTTGAAAGACTTGCAAGAGAGACAGAAGGGTATTCGGGAAGTGATCTGCAAGCATTGTGTGAAGAAGCTGCAATGATGCCAATTAGGGAACTGGGTGAAAATATTCTCACCGTCAGGGCAAATCAGGTACGACCGCTAAGATATGAAGATTTTCAGAAGGCGATGACTGTAATCAGGCCAAGCTTAAGCAAAAGCAAGTGGGAAGAGCTTGAGAGGTGGAACGAAGAGTTCGGCTCTAATTGA

Protein Analysis

531

Amino Acids

58.66

Weight (kDa)

9.42

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 295 - 425 9.5e-39 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 450 - 484 1.7e-13 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 6 cut(s) 22, 32, 162, 165, 203, 1484
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 3 cut(s) 348, 555, 924
AcvI CACGTG 1 cut(s) 626
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 3 cut(s) 1020, 1265, 1479
AfiI CCNNNNNNNGG 3 cut(s) 771, 878, 908
AflII CTTAAG 1 cut(s) 1534
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 5 cut(s) 111, 728, 990, 1135, 1355
AjnI CCWGG 1 cut(s) 901
AleI CACNNNNGTG 1 cut(s) 407
Alw26I GTCTC 7 cut(s) 32, 186, 253, 624, 840, 973, 1364
AoxI GGCC 7 cut(s) 235, 315, 393, 660, 869, 1321, 1526
ApeKI GCWGC 1 cut(s) 1418
ApoI RAATTY 1 cut(s) 15
AseI ATTAAT 1 cut(s) 90
Asp700I GAANNNNTTC 3 cut(s) 760, 1452, 1500
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 3 cut(s) 236, 896, 1321
AsuHPI GGTGA 7 cut(s) 176, 415, 457, 573, 811, 1450, 1457
AsuII TTCGAA 2 cut(s) 288, 865
AvaII GGWCC 1 cut(s) 896
AxyI CCTNAGG 1 cut(s) 1304
BbrPI CACGTG 1 cut(s) 626
BbsI GAAGAC 3 cut(s) 148, 854, 1252
BbvI GCAGC 1 cut(s) 1405
BccI CCATC 3 cut(s) 247, 808, 1063
BceAI ACGGC 2 cut(s) 241, 302
BciT130I CCWGG 1 cut(s) 903
BcoDI GTCTC 7 cut(s) 32, 186, 253, 624, 840, 973, 1364
BfaI CTAG 1 cut(s) 876
BfmI CTRYAG 2 cut(s) 364, 744
BfrI CTTAAG 1 cut(s) 1534
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 2 cut(s) 165, 1419
BlsI GCNGC 2 cut(s) 166, 1420
Bme1390I CCNGG 1 cut(s) 903
Bme18I GGWCC 1 cut(s) 896
BmgT120I GGNCC 3 cut(s) 236, 896, 1321
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 903
BmrI ACTGGG 2 cut(s) 610, 1451
BmsI GCATC 3 cut(s) 587, 983, 1416
BmuI ACTGGG 2 cut(s) 610, 1451
BpiI GAAGAC 3 cut(s) 148, 854, 1252
BplI GAGNNNNNCTC 3 cut(s) 383, 415, 1568
BpmI CTGGAG 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 550
Bpu14I TTCGAA 2 cut(s) 288, 865
BpuEI CTTGAG 5 cut(s) 260, 812, 1203, 1301, 1580
Bsa29I ATCGAT 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 219, 312
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 388, 418
Bsc4I CCNNNNNNNGG 3 cut(s) 771, 878, 908
Bse1I ACTGG 6 cut(s) 195, 616, 862, 1230, 1254, 1446
Bse21I CCTNAGG 1 cut(s) 1304
Bse3DI GCAATG 2 cut(s) 354, 1428
BseBI CCWGG 1 cut(s) 903
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 219, 312
BseGI GGATG 3 cut(s) 307, 1078, 1234
BseLI CCNNNNNNNGG 3 cut(s) 771, 878, 908
BseMI GCAATG 2 cut(s) 354, 1428
BseMII CTCAG 1 cut(s) 442
BseNI ACTGG 6 cut(s) 195, 616, 862, 1230, 1254, 1446
BseRI GAGGAG 2 cut(s) 68, 160
BseXI GCAGC 1 cut(s) 1405
Bsh1236I CGCG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 1484
BshFI GGCC 7 cut(s) 237, 317, 395, 662, 871, 1323, 1528
BshVI ATCGAT 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 1484
BslI CCNNNNNNNGG 3 cut(s) 771, 878, 908
BsmAI GTCTC 7 cut(s) 32, 186, 253, 624, 840, 973, 1364
BsmBI CGTCTC 1 cut(s) 253
BsnI GGCC 7 cut(s) 237, 317, 395, 662, 871, 1323, 1528
Bsp119I TTCGAA 2 cut(s) 288, 865
Bsp1407I TGTACA 1 cut(s) 1263
Bsp143I GATC 4 cut(s) 306, 1183, 1197, 1393
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 6 cut(s) 22, 32, 162, 165, 203, 1484
BspANI GGCC 7 cut(s) 237, 317, 395, 662, 871, 1323, 1528
BspCNI CTCAG 1 cut(s) 441
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 1548
BspT104I TTCGAA 2 cut(s) 288, 865
BspTI CTTAAG 1 cut(s) 1534
BsrDI GCAATG 2 cut(s) 354, 1428
BsrGI TGTACA 1 cut(s) 1263
BsrI ACTGG 6 cut(s) 195, 616, 862, 1230, 1254, 1446
BssECI CCNNGG 2 cut(s) 219, 312
BssMI GATC 4 cut(s) 306, 1183, 1197, 1393
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 2 cut(s) 219, 312
Bst2UI CCWGG 1 cut(s) 903
Bst4CI ACNGT 5 cut(s) 40, 696, 1155, 1462, 1519
Bst6I CTCTTC 5 cut(s) 324, 838, 1034, 1548, 1569
BstACI GRCGYC 1 cut(s) 351
BstAFI CTTAAG 1 cut(s) 1534
BstAPI GCANNNNNTGC 1 cut(s) 566
BstAUI TGTACA 1 cut(s) 1263
BstBAI YACGTR 1 cut(s) 626
BstBI TTCGAA 2 cut(s) 288, 865
BstC8I GCNNGC 6 cut(s) 235, 873, 924, 1104, 1123, 1401
BstDEI CTNAG 5 cut(s) 428, 550, 1241, 1304, 1487
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 307, 1078, 1234
BstFNI CGCG 1 cut(s) 32
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 4 cut(s) 309, 1186, 1200, 1396
BstMAI GTCTC 7 cut(s) 32, 186, 253, 624, 840, 973, 1364
BstMBI GATC 4 cut(s) 306, 1183, 1197, 1393
BstMCI CGRYCG 1 cut(s) 1484
BstMWI GCNNNNNNNGC 4 cut(s) 234, 323, 566, 575
BstNI CCWGG 1 cut(s) 903
BstNSI RCATGY 2 cut(s) 101, 608
BstSCI CCNGG 1 cut(s) 901
BstSFI CTRYAG 2 cut(s) 364, 744
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 1405
BstV2I GAAGAC 3 cut(s) 148, 854, 1252
Bsu15I ATCGAT 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 1304
BsuRI GGCC 7 cut(s) 237, 317, 395, 662, 871, 1323, 1528
BsuTUI ATCGAT 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 1526
BtsCI GGATG 3 cut(s) 307, 1078, 1234
BtsIMutI CAGTG 2 cut(s) 436, 855
Cac8I GCNNGC 6 cut(s) 235, 873, 924, 1104, 1123, 1401
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 3 cut(s) 236, 896, 1321
ClaI ATCGAT 1 cut(s) 138
CseI GACGC 3 cut(s) 359, 1127, 1241
Csp6I GTAC 3 cut(s) 1019, 1264, 1478
CspCI CAANNNNNGTGG 2 cut(s) 978, 1013
CviQI GTAC 3 cut(s) 1019, 1264, 1478
DdeI CTNAG 5 cut(s) 428, 550, 1241, 1304, 1487
DpnI GATC 4 cut(s) 308, 1185, 1199, 1395
DpnII GATC 4 cut(s) 306, 1183, 1197, 1393
Eam1104I CTCTTC 5 cut(s) 324, 838, 1034, 1548, 1569
EarI CTCTTC 5 cut(s) 324, 838, 1034, 1548, 1569
EciI GGCGGA 2 cut(s) 151, 192
Eco130I CCWWGG 2 cut(s) 219, 312
Eco47I GGWCC 1 cut(s) 896
Eco57I CTGAAG 3 cut(s) 348, 555, 924
Eco72I CACGTG 1 cut(s) 626
Eco81I CCTNAGG 1 cut(s) 1304
EcoRII CCWGG 1 cut(s) 901
EcoT14I CCWWGG 2 cut(s) 219, 312
ErhI CCWWGG 2 cut(s) 219, 312
Esp3I CGTCTC 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 165, 1419
FokI GGATG 3 cut(s) 314, 1085, 1241
Fsp4HI GCNGC 2 cut(s) 165, 1419
FspBI CTAG 1 cut(s) 876
GlaI GCGC 1 cut(s) 531
GluI GCNGC 2 cut(s) 165, 1419
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 7 cut(s) 237, 317, 395, 662, 871, 1323, 1528
HgaI GACGC 3 cut(s) 359, 1127, 1241
HhaI GCGC 1 cut(s) 532
Hin1I GRCGYC 1 cut(s) 351
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 1 cut(s) 1095
HindII GTYRAC 1 cut(s) 1095
HindIII AAGCTT 2 cut(s) 1013, 1531
HinfI GANTC 5 cut(s) 140, 179, 209, 655, 944
HphI GGTGA 7 cut(s) 176, 415, 457, 573, 811, 1450, 1457
Hpy166II GTNNAC 4 cut(s) 855, 899, 1095, 1264
Hpy188I TCNGA 8 cut(s) 175, 462, 493, 943, 949, 1141, 1149, 1506
Hpy188III TCNNGA 4 cut(s) 791, 1047, 1220, 1386
Hpy8I GTNNAC 4 cut(s) 855, 899, 1095, 1264
Hpy99I CGWCG 2 cut(s) 179, 392
HpyCH4III ACNGT 5 cut(s) 40, 696, 1155, 1462, 1519
HpyCH4IV ACGT 1 cut(s) 625
HpyCH4V TGCA 9 cut(s) 560, 578, 691, 926, 974, 1289, 1364, 1399, 1421
HpyF10VI GCNNNNNNNGC 4 cut(s) 234, 323, 566, 575
HpyF3I CTNAG 5 cut(s) 428, 550, 1241, 1304, 1487
HpySE526I ACGT 1 cut(s) 625
Hsp92I GRCGYC 1 cut(s) 351
HspAI GCGC 1 cut(s) 530
Kzo9I GATC 4 cut(s) 306, 1183, 1197, 1393
LguI GCTCTTC 1 cut(s) 1548
LmnI GCTCC 1 cut(s) 155
Lsp1109I GCAGC 1 cut(s) 1405
LweI GCATC 3 cut(s) 587, 983, 1416
MaeI CTAG 1 cut(s) 876
MaeII ACGT 1 cut(s) 625
MaeIII GTNAC 2 cut(s) 609, 1165
MalI GATC 4 cut(s) 308, 1185, 1199, 1395
MboI GATC 4 cut(s) 306, 1183, 1197, 1393
MluCI AATT 9 cut(s) 15, 87, 290, 719, 1062, 1077, 1191, 1431, 1588
MlyI GAGTC 2 cut(s) 188, 953
MmeI TCCRAC 2 cut(s) 198, 276
MroXI GAANNNNTTC 3 cut(s) 760, 1452, 1500
MseI TTAA 6 cut(s) 90, 126, 768, 963, 1283, 1535
MslI CAYNNNNRTG 1 cut(s) 407
MspCI CTTAAG 1 cut(s) 1534
MspR9I CCNGG 1 cut(s) 903
MvaI CCWGG 1 cut(s) 903
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 4 cut(s) 234, 323, 566, 575
NcoI CCATGG 1 cut(s) 219
NdeII GATC 4 cut(s) 306, 1183, 1197, 1393
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 1165
NspI RCATGY 2 cut(s) 101, 608
NspV TTCGAA 2 cut(s) 288, 865
OliI CACNNNNGTG 1 cut(s) 407
PciI ACATGT 1 cut(s) 604
PciSI GCTCTTC 1 cut(s) 1548
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PdmI GAANNNNTTC 3 cut(s) 760, 1452, 1500
PfeI GAWTC 3 cut(s) 140, 209, 655
PkrI GCNGC 2 cut(s) 166, 1420
PleI GAGTC 2 cut(s) 187, 952
PmaCI CACGTG 1 cut(s) 626
PmlI CACGTG 1 cut(s) 626
PpsI GAGTC 2 cut(s) 187, 952
Ppu21I YACGTR 1 cut(s) 626
PscI ACATGT 1 cut(s) 604
PshBI ATTAAT 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 901
PspCI CACGTG 1 cut(s) 626
PspGI CCWGG 1 cut(s) 901
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 3 cut(s) 236, 896, 1321
RsaI GTAC 3 cut(s) 1020, 1265, 1479
RsaNI GTAC 3 cut(s) 1019, 1264, 1478
RseI CAYNNNNRTG 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 1548
SaqAI TTAA 6 cut(s) 90, 126, 768, 963, 1283, 1535
SatI GCNGC 2 cut(s) 165, 1419
Sau3AI GATC 4 cut(s) 306, 1183, 1197, 1393
Sau96I GGNCC 3 cut(s) 236, 896, 1321
SchI GAGTC 2 cut(s) 188, 953
ScrFI CCNGG 1 cut(s) 903
SfaNI GCATC 3 cut(s) 587, 983, 1416
SfcI CTRYAG 2 cut(s) 364, 744
SfuI TTCGAA 2 cut(s) 288, 865
SinI GGWCC 1 cut(s) 896
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 6 cut(s) 275, 791, 1218, 1316, 1534, 1559
SmoI CTYRAG 6 cut(s) 275, 791, 1218, 1316, 1534, 1559
Sse9I AATT 9 cut(s) 15, 87, 290, 719, 1062, 1077, 1191, 1431, 1588
SsiI CCGC 6 cut(s) 22, 32, 162, 165, 203, 1484
SspI AATATT 1 cut(s) 1453
SspMI CTAG 1 cut(s) 876
StyD4I CCNGG 1 cut(s) 901
StyI CCWWGG 2 cut(s) 219, 312
TaaI ACNGT 5 cut(s) 40, 696, 1155, 1462, 1519
TaiI ACGT 1 cut(s) 628
TaqI TCGA 5 cut(s) 138, 288, 345, 390, 865
TasI AATT 9 cut(s) 15, 87, 290, 719, 1062, 1077, 1191, 1431, 1588
TatI WGTACW 1 cut(s) 1263
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 3 cut(s) 140, 209, 655
Tru1I TTAA 6 cut(s) 90, 126, 768, 963, 1283, 1535
Tru9I TTAA 6 cut(s) 90, 126, 768, 963, 1283, 1535
TscAI CASTG 2 cut(s) 436, 862
TseFI GTSAC 1 cut(s) 1165
TseI GCWGC 1 cut(s) 1418
Tsp45I GTSAC 1 cut(s) 1165
TspDTI ATGAA 5 cut(s) 729, 1021, 1057, 1089, 1509
TspGWI ACGGA 4 cut(s) 142, 235, 754, 1176
TspRI CASTG 2 cut(s) 436, 862
Vha464I CTTAAG 1 cut(s) 1534
VpaK11BI GGWCC 1 cut(s) 896
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 1 cut(s) 15
XceI RCATGY 2 cut(s) 101, 608
XmnI GAANNNNTTC 3 cut(s) 760, 1452, 1500
XspI CTAG 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.