Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000330

Physical Location & Seq

Genomic Coordinates Forward (+)

30748784 .. 30757473

Gene Structure 8690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0215400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGAATTACGAGAAGAGGCTCAGAGCTGCGGCGGAGATCATACTCGCCGACGACGCACGCGCCGGAGACGAGCGTGTCAGCGCCGAAGAGCTCGGGGTGACGGCGACGCTGAAGCCGCACCAAGTCGAAGGCGTCTCGTGGCTCATACGGCGGTACAACCTCGGCGTCAACGTCGTTCTCGGAGATGAGATGGGACTGGGAAAGACTCTGCAAGCTGTCGCTTTATTGAGCTATTTGAAGGTTCAAAAGATGTCACGTGGACCATTCTTGGTGTTGTGTCCTCTAAGTGTGACTGATGGTTGGGTCTCAGAGATGGAAAACTTTGCTCCAAAATTAAAATTTGTACGGTATGTTGGTGATAAAGAATATAGGCGCAGCTTACGCAGGACAATATATGAGCATGTGAAAGTTCATTCCTCAGTATCTGATGTGTTGTCGTTACCTTTCGATGTCCTGTTGACAACATATGACACCGCGTTGGTCGATCAGGATTTCCTTTCTCAAATACCATGGAACTATGCAGTAATTGATGAAGCGCAAAGGCTTAAAAACCCTTCCAGTGTTCTGTACAATGTCCTAAGAGAGCGGTATCTCATTCCAAGAAGGTTACTGATGACCGGCACACCTATTCAAAACAATCTGACTGAACTGTGGGCTTTGATGTATTTTTGTATGCCTTCAATCTTTCTGAAACTGGACGAGTTCCTTGTTACATTCAAGGAAGCTGGAGATCCTTCGTCAGGCTATAATACAGCTGAAGTCATAAAACAACTCAAAAGCTTAAAACGCATATTGGGGGCTTTCATGCTCCGGCGCACAAAATCTAAACTCATCGAGATTGGGGATCTATTCCTGCCACCCCTTACTGAGATAACAGTGCTGGCACCACTGGTGAGCTTGCAAAAGAAGGTGTACATGTCAATATTGAGGAAGGAGCTTCCCAAGCTACTTGCACTATCTTCTGGAGGTTCAAATCATCAATCCTTACAGAATATTGTGATACAGTTGCGAAAAGCATGTAGCCATCCTTATCTCTTCCCTGGTATTGAGCCAGAACCATATGAAGAGGGTGAACACCTGATTCAGGCTAGCGGTAAACTTATGATTTTGGATCGACTACTTCGGAAGCTGCATGAGCAGGGACGCCGTGTCCTTCTCTTTGCTCAGATGACGCATACACTAGACGTTCTACAGGATTTTCTTGAGTTGCGAAAATATTCCTATGAGCGCCTTGATGGATCAATTCGGGCTGAGGAGCGGTTTGCTGCTATAAGAAGTTTCAGCAGGCAATCAGCAAAACAAAGTTTGAAGTCCCAAGCTGATCAAAATGATGCTTTTGTCTTCATGATCTCCACTAGAGCTGGGGGAGTTGGCTTGAATCTTGTCGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCCCAGGTTGATAAGCAAGCTTTGCAGCGGGCACACAGGATTGGTCAATTAAATTCTGTGCTGTCAATAAACCTAGTTACCGGACGTACAGTGGAGGAGGTTATCATGCGGAGAGCAGAAAGGAAGTTGCAGCTTAGCCATAATGTTATTGGGGATGATGTTATGGACAAGGAAGGTAAAGAGACAGCAGGAGTTGAACCTAGTGACCTGCGATCTATCATATTTGGGTTACATCTGTTTGATCCTGCTGAAGTCAACAATGGTGAGTGTGAGATTTCAGAATTGGATGCTTTGGCCGAGAAGGCGATTTCAGTGCGCAATAAAGAAACAGCAACCAAGGATGAGAGGAAATTTGAGGTCGGTCCAACGGATGTATTGAATGAACAAGATCTGGTTGCAGGAGGAAGTTCTACTTCTCTCAGTTTAAATACTAGTTTCGATGAAGATTCATATCTCTCCTGGGTTGAGAAATTCAAGGAGGTACCACAAGCAAATAGCAATGAAAATTCAGATATGGGAAGCCGAAGAAACTTACCCGAGGAAAGGCGTCTAAAACTTGACGCTGCAAAAAAAAGAGCAGAGGAAAAGAAGTTATCTAGGTGGGTAGACCTGGGCTACCAATCACTGTCTGTTGAGGAGCCTATCAGTCCTGTTGATAGGGACATCATGTCCGACTCAGGTTCTGTCCAGTTTGTTTATGGAGATTGTACACAACCATCAAAAGTTTGTCCCTCTGAGCCTACCATTATTTTCAGCTGTGTTGATGATTCTGGACAGTGGGGTCATGGAGGAATGTTTAATGCACTGGAGAGGCTATCTGCAAGTGTCCCCGATGCATATCAACGAGCTTCTGAATTTAACGACCTGCATCTTGGTGATCTTCACCTTATAAGACTTGATGAGGATTCGAATGAACAGAAGATGGACAGCAATCCCCCTCGATGGGTGGCTTTAGCTGTTGTACAATCTTATAATCCCAGGCGTAAAGTACCCCGGAGCAAGATTTCTATTCCTGACTTGGAACGTTGCTTATCAAAGGCATCGTTTTCAGCCGCCCAAAGTTCTGCTTCAATCCACATGCCACGTATTGGGTATCAAGATGCATCGGATCGTGCAGAATGGTATGCGGTGGAACGTCTTCTACGAAAATATGCTTCTATCCATGGCATAAAGATTTATGTGTATTATTATAGACGATCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0001578 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006810 GO:0006928 GO:0006996 GO:0006997 GO:0006998 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008017 GO:0008088 GO:0008089 GO:0008092 GO:0008150 GO:0008568 GO:0009987 GO:0010256 GO:0010458 GO:0010970 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019896 GO:0022402 GO:0022411 GO:0022607 GO:0030496 GO:0030705 GO:0031090 GO:0031468 GO:0031965 GO:0031967 GO:0031975 GO:0034214 GO:0034643 GO:0042623 GO:0043014 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046907 GO:0047497 GO:0048285 GO:0048487 GO:0051013 GO:0051179 GO:0051228 GO:0051230 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0061024 GO:0061640 GO:0065003 GO:0071840 GO:0072384 GO:0090148 GO:0098930 GO:0099111 GO:0140014 GO:0140096 GO:1902850 GO:1903008 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

876

Amino Acids

99.09

Weight (kDa)

6.41

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	40 - 345	1.2e-65	SNF2-related domain
Helicase_C	PF00271	366 - 490	1.2e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44890 AT2G44890 AT2G45510
fragaria_vesca	FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica	MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica	Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis	pycom02g16390
rosa_chinensis	RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata	RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora	Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii	Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa	Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha	Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana	Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2315, 2397
AasI	GACNNNNNNGTC	2 cut(s)	74, 2205
Acc16I	TGCGCA	1 cut(s)	1742
Acc36I	ACCTGC	2 cut(s)	1641, 2298
Acc65I	GGTACC	1 cut(s)	1906
AccB1I	GGYRCC	2 cut(s)	883, 1906
AccB7I	CCANNNNNTGG	1 cut(s)	2513
AccBSI	CCGCTC	2 cut(s)	586, 1258
AccI	GTMKAC	1 cut(s)	2031
AccII	CGCG	2 cut(s)	60, 476
AclI	AACGTT	1 cut(s)	2449
AclWI	GGATC	6 cut(s)	725, 852, 1119, 1246, 1661, 2541
AcoI	YGGCCR	1 cut(s)	1719
AcsI	RAATTY	6 cut(s)	338, 1477, 1775, 1895, 1930, 2279
AcuI	CTGAAG	3 cut(s)	131, 777, 1695
AcvI	CACGTG	1 cut(s)	257
AcyI	GRCGYC	4 cut(s)	132, 165, 1144, 1972
AfaI	GTAC	9 cut(s)	155, 345, 569, 914, 1513, 1908, 2134, 2388, 2415
AfiI	CCNNNNNNNGG	6 cut(s)	740, 1084, 1968, 2367, 2368, 2513
AflIII	ACRYGT	1 cut(s)	915
AhdI	GACNNNNNGTC	2 cut(s)	1148, 2092
AhlI	ACTAGT	1 cut(s)	1856
AjnI	CCWGG	5 cut(s)	1039, 1428, 1883, 2034, 2402
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	4 cut(s)	60, 139, 310, 1601
AlwI	GGATC	6 cut(s)	725, 852, 1119, 1246, 1661, 2541
AlwNI	CAGNNNCTG	2 cut(s)	425, 2108
Ama87I	CYCGRG	2 cut(s)	92, 1961
AoxI	GGCC	1 cut(s)	1719
ApeKI	GCWGC	8 cut(s)	26, 375, 1129, 1265, 1388, 1450, 1555, 1988
ApoI	RAATTY	6 cut(s)	338, 1477, 1775, 1895, 1930, 2279
Asp700I	GAANNNNTTC	2 cut(s)	1216, 2562
Asp718I	GGTACC	1 cut(s)	1906
AspLEI	GCGC	7 cut(s)	62, 83, 375, 538, 816, 1230, 1743
AspS9I	GGNCC	2 cut(s)	260, 1787
AsuC2I	CCSGG	1 cut(s)	2419
AsuHPI	GGTGA	7 cut(s)	109, 368, 904, 1082, 1700, 2300, 2312
AsuII	TTCGAA	1 cut(s)	2333
AsuNHI	GCTAGC	1 cut(s)	1088
AvaI	CYCGRG	2 cut(s)	92, 1961
AvaII	GGWCC	2 cut(s)	260, 1787
BaeGI	GKGCMC	1 cut(s)	1459
BanI	GGYRCC	2 cut(s)	883, 1906
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	1333, 2555
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	1251
BbvI	GCAGC	8 cut(s)	13, 387, 1116, 1252, 1375, 1462, 1567, 1975
BccI	CCATC	8 cut(s)	184, 290, 307, 1032, 1229, 2149, 2341, 2361
BceAI	ACGGC	3 cut(s)	117, 164, 1131
BcgI	CGANNNNNNTGC	2 cut(s)	1720, 1754
BciT130I	CCWGG	5 cut(s)	1041, 1430, 1885, 2036, 2404
BclI	TGATCA	1 cut(s)	1321
BcnI	CCSGG	1 cut(s)	2419
BcoDI	GTCTC	4 cut(s)	60, 139, 310, 1601
BcuI	ACTAGT	1 cut(s)	1856
BfaI	CTAG	7 cut(s)	1089, 1181, 1356, 1499, 1626, 1857, 2022
BfmI	CTRYAG	1 cut(s)	1190
BfoI	RGCGCY	2 cut(s)	84, 1231
BfuAI	ACCTGC	2 cut(s)	1641, 2298
BglI	GCCNNNNNGGC	1 cut(s)	1727
BglII	AGATCT	1 cut(s)	1813
BlpI	GCTNAGC	1 cut(s)	1559
Bme1390I	CCNGG	6 cut(s)	1041, 1430, 1885, 2036, 2404, 2419
Bme18I	GGWCC	2 cut(s)	260, 1787
BmeRI	GACNNNNNGTC	2 cut(s)	1148, 2092
BmeT110I	CYCGRG	2 cut(s)	92, 1961
BmgT120I	GGNCC	2 cut(s)	260, 1787
BmiI	GGNNCC	3 cut(s)	885, 1908, 2064
BmrFI	CCNGG	6 cut(s)	1041, 1430, 1885, 2036, 2404, 2419
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	7 cut(s)	1321, 1702, 2248, 2302, 2474, 2515, 2537
BmtI	GCTAGC	1 cut(s)	1092
BmuI	ACTGGG	1 cut(s)	206
BpiI	GAAGAC	2 cut(s)	1333, 2555
BpmI	CTGGAG	3 cut(s)	747, 984, 2252
Bpu10I	CCTNAGC	1 cut(s)	1251
Bpu1102I	GCTNAGC	1 cut(s)	1559
Bpu14I	TTCGAA	1 cut(s)	2333
BpuEI	CTTGAG	1 cut(s)	1223
BpuMI	CCSGG	1 cut(s)	2419
BsaAI	YACGTR	2 cut(s)	257, 2510
BsaBI	GATNNNNATC	3 cut(s)	1422, 1875, 2262
BsaHI	GRCGYC	4 cut(s)	132, 165, 1144, 1972
BsaI	GGTCTC	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	1505
Bsc4I	CCNNNNNNNGG	6 cut(s)	740, 1084, 1968, 2367, 2368, 2513
Bse118I	RCCGGY	1 cut(s)	617
Bse1I	ACTGG	6 cut(s)	201, 558, 699, 894, 2113, 2235
Bse3DI	GCAATG	1 cut(s)	1930
Bse8I	GATNNNNATC	3 cut(s)	1422, 1875, 2262
BseBI	CCWGG	5 cut(s)	1041, 1430, 1885, 2036, 2404
BseGI	GGATG	5 cut(s)	1024, 1585, 1717, 1771, 1801
BseJI	GATNNNNATC	3 cut(s)	1422, 1875, 2262
BseLI	CCNNNNNNNGG	6 cut(s)	740, 1084, 1968, 2367, 2368, 2513
BseMI	GCAATG	1 cut(s)	1930
BseMII	CTCAG	9 cut(s)	34, 321, 432, 858, 1178, 1242, 1858, 2115, 2151
BseNI	ACTGG	6 cut(s)	201, 558, 699, 894, 2113, 2235
BseRI	GAGGAG	3 cut(s)	1268, 1535, 2075
BseSI	GKGCMC	1 cut(s)	1459
BseXI	GCAGC	8 cut(s)	13, 387, 1116, 1252, 1375, 1462, 1567, 1975
BseYI	CCCAGC	1 cut(s)	1361
BsgI	GTGCAG	1 cut(s)	2559
Bsh1236I	CGCG	2 cut(s)	60, 476
BshFI	GGCC	1 cut(s)	1721
BshNI	GGYRCC	2 cut(s)	883, 1906
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	2 cut(s)	92, 1961
BsiSI	CCGG	5 cut(s)	63, 618, 811, 1506, 2419
BslFI	GGGAC	6 cut(s)	207, 1155, 1297, 2099, 2139, 2237
BslI	CCNNNNNNNGG	6 cut(s)	740, 1084, 1968, 2367, 2368, 2513
BsmAI	GTCTC	4 cut(s)	60, 139, 310, 1601
BsmBI	CGTCTC	2 cut(s)	60, 139
BsmFI	GGGAC	6 cut(s)	207, 1155, 1297, 2099, 2139, 2237
BsnI	GGCC	1 cut(s)	1721
Bso31I	GGTCTC	1 cut(s)	310
BsoBI	CYCGRG	2 cut(s)	92, 1961
Bsp119I	TTCGAA	1 cut(s)	2333
Bsp1286I	GDGCHC	2 cut(s)	93, 1459
Bsp1407I	TGTACA	4 cut(s)	567, 912, 2132, 2386
Bsp1720I	GCTNAGC	1 cut(s)	1559
Bsp19I	CCATGG	2 cut(s)	509, 2587
BspANI	GGCC	1 cut(s)	1721
BspCNI	CTCAG	9 cut(s)	33, 320, 431, 859, 1177, 1243, 1857, 2114, 2152
BspFNI	CGCG	2 cut(s)	60, 476
BspHI	TCATGA	1 cut(s)	1344
BspLI	GGNNCC	3 cut(s)	885, 1908, 2064
BspMI	ACCTGC	2 cut(s)	1641, 2298
BspOI	GCTAGC	1 cut(s)	1092
BspPI	GGATC	6 cut(s)	725, 852, 1119, 1246, 1661, 2541
BspQI	GCTCTTC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	2333
BspT107I	GGYRCC	2 cut(s)	883, 1906
BspTNI	GGTCTC	1 cut(s)	310
BsrBI	CCGCTC	2 cut(s)	586, 1258
BsrDI	GCAATG	1 cut(s)	1930
BsrFI	RCCGGY	1 cut(s)	617
BsrGI	TGTACA	4 cut(s)	567, 912, 2132, 2386
BsrI	ACTGG	6 cut(s)	201, 558, 699, 894, 2113, 2235
BssAI	RCCGGY	1 cut(s)	617
BssNI	GRCGYC	4 cut(s)	132, 165, 1144, 1972
BssSI	CACGAG	1 cut(s)	136
BssT1I	CCWWGG	3 cut(s)	509, 1761, 2587
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	5 cut(s)	1041, 1430, 1885, 2036, 2404
Bst4CI	ACNGT	8 cut(s)	348, 651, 877, 1005, 1399, 1516, 2052, 2202
Bst6I	CTCTTC	4 cut(s)	8, 81, 1040, 1059
BstACI	GRCGYC	4 cut(s)	132, 165, 1144, 1972
BstAPI	GCANNNNNTGC	1 cut(s)	1447
BstAUI	TGTACA	4 cut(s)	567, 912, 2132, 2386
BstBAI	YACGTR	2 cut(s)	257, 2510
BstBI	TTCGAA	1 cut(s)	2333
BstC8I	GCNNGC	8 cut(s)	58, 213, 882, 899, 1090, 1286, 1443, 1455
BstDSI	CCRYGG	2 cut(s)	509, 2587
BstENI	CCTNNNNNAGG	2 cut(s)	738, 1082
BstF5I	GGATG	5 cut(s)	1024, 1585, 1717, 1771, 1801
BstFNI	CGCG	2 cut(s)	60, 476
BstH2I	RGCGCY	2 cut(s)	84, 1231
BstHHI	GCGC	7 cut(s)	62, 83, 375, 538, 816, 1230, 1743
BstMAI	GTCTC	4 cut(s)	60, 139, 310, 1601
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 115, 148, 381, 786, 943, 1135, 1447, 1727
BstNI	CCWGG	5 cut(s)	1041, 1430, 1885, 2036, 2404
BstNSI	RCATGY	4 cut(s)	404, 919, 1020, 2506
BstSCI	CCNGG	6 cut(s)	1039, 1428, 1883, 2034, 2402, 2417
BstSFI	CTRYAG	1 cut(s)	1190
BstSLI	GKGCMC	1 cut(s)	1459
BstUI	CGCG	2 cut(s)	60, 476
BstV1I	GCAGC	8 cut(s)	13, 387, 1116, 1252, 1375, 1462, 1567, 1975
BstV2I	GAAGAC	2 cut(s)	1333, 2555
BstX2I	RGATCY	3 cut(s)	730, 844, 1813
BstYI	RGATCY	3 cut(s)	730, 844, 1813
BsuRI	GGCC	1 cut(s)	1721
BtgI	CCRYGG	2 cut(s)	509, 2587
BtsCI	GGATG	5 cut(s)	1024, 1585, 1717, 1771, 1801
BtsIMutI	CAGTG	8 cut(s)	565, 882, 887, 1521, 1743, 2048, 2207, 2228
BveI	ACCTGC	2 cut(s)	1641, 2298
Cac8I	GCNNGC	8 cut(s)	58, 213, 882, 899, 1090, 1286, 1443, 1455
CaiI	CAGNNNCTG	2 cut(s)	425, 2108
CciI	TCATGA	1 cut(s)	1344
CfoI	GCGC	7 cut(s)	62, 83, 375, 538, 816, 1230, 1743
Cfr10I	RCCGGY	1 cut(s)	617
Cfr13I	GGNCC	2 cut(s)	260, 1787
CseI	GACGC	8 cut(s)	62, 115, 121, 154, 1152, 1180, 1961, 1994
Csp6I	GTAC	9 cut(s)	154, 344, 568, 913, 1512, 1907, 2133, 2387, 2414
CviQI	GTAC	9 cut(s)	154, 344, 568, 913, 1512, 1907, 2133, 2387, 2414
DraI	TTTAAA	1 cut(s)	1851
DrdI	GACNNNNNNGTC	2 cut(s)	74, 2205
DriI	GACNNNNNGTC	2 cut(s)	1148, 2092
DseDI	GACNNNNNNGTC	2 cut(s)	74, 2205
EaeI	YGGCCR	1 cut(s)	1719
Eam1104I	CTCTTC	4 cut(s)	8, 81, 1040, 1059
Eam1105I	GACNNNNNGTC	2 cut(s)	1148, 2092
EarI	CTCTTC	4 cut(s)	8, 81, 1040, 1059
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	3 cut(s)	509, 1761, 2587
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	260, 1787
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	3 cut(s)	131, 777, 1695
Eco72I	CACGTG	1 cut(s)	257
Eco88I	CYCGRG	2 cut(s)	92, 1961
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	2 cut(s)	738, 1082
EcoRII	CCWGG	5 cut(s)	1039, 1428, 1883, 2034, 2402
EcoT14I	CCWWGG	3 cut(s)	509, 1761, 2587
EcoT22I	ATGCAT	2 cut(s)	2263, 2530
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	3 cut(s)	509, 1761, 2587
Esp3I	CGTCTC	2 cut(s)	60, 139
FalI	AAGNNNNNCTT	4 cut(s)	1822, 1854, 2476, 2508
FaqI	GGGAC	6 cut(s)	207, 1155, 1297, 2099, 2139, 2237
FauI	CCCGC	1 cut(s)	1446
FauNDI	CATATG	2 cut(s)	466, 1060
FbaI	TGATCA	1 cut(s)	1321
FblI	GTMKAC	1 cut(s)	2031
FokI	GGATG	5 cut(s)	1011, 1592, 1724, 1778, 1808
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	7 cut(s)	1089, 1181, 1356, 1499, 1626, 1857, 2022
FspI	TGCGCA	1 cut(s)	1742
GlaI	GCGC	7 cut(s)	61, 82, 374, 537, 815, 1229, 1742
GsaI	CCCAGC	1 cut(s)	1365
GsuI	CTGGAG	3 cut(s)	747, 984, 2252
HaeII	RGCGCY	2 cut(s)	84, 1231
HaeIII	GGCC	1 cut(s)	1721
HapII	CCGG	5 cut(s)	63, 618, 811, 1506, 2419
HgaI	GACGC	8 cut(s)	62, 115, 121, 154, 1152, 1180, 1961, 1994
HhaI	GCGC	7 cut(s)	62, 83, 375, 538, 816, 1230, 1743
Hin1I	GRCGYC	4 cut(s)	132, 165, 1144, 1972
Hin6I	GCGC	7 cut(s)	60, 81, 373, 536, 814, 1228, 1741
HinP1I	GCGC	7 cut(s)	60, 81, 373, 536, 814, 1228, 1741
HincII	GTYRAC	3 cut(s)	169, 459, 1681
HindII	GTYRAC	3 cut(s)	169, 459, 1681
HindIII	AAGCTT	2 cut(s)	778, 1443
HinfI	GANTC	8 cut(s)	205, 1081, 1378, 1423, 1871, 2099, 2192, 2330
HpaII	CCGG	5 cut(s)	63, 618, 811, 1506, 2419
HphI	GGTGA	7 cut(s)	109, 368, 904, 1082, 1700, 2300, 2312
Hpy166II	GTNNAC	9 cut(s)	169, 260, 459, 913, 1073, 1097, 1681, 2032, 2135
Hpy188III	TCNNGA	9 cut(s)	488, 835, 963, 1202, 1345, 2196, 2438, 2522, 2628
Hpy8I	GTNNAC	9 cut(s)	169, 260, 459, 913, 1073, 1097, 1681, 2032, 2135
Hpy99I	CGWCG	4 cut(s)	53, 56, 109, 176
HpyCH4III	ACNGT	8 cut(s)	348, 651, 877, 1005, 1399, 1516, 2052, 2202
HpyCH4IV	ACGT	7 cut(s)	171, 256, 1185, 1510, 2449, 2509, 2560
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 115, 148, 381, 786, 943, 1135, 1447, 1727
HpySE526I	ACGT	7 cut(s)	171, 256, 1185, 1510, 2449, 2509, 2560
Hsp92I	GRCGYC	4 cut(s)	132, 165, 1144, 1972
HspAI	GCGC	7 cut(s)	60, 81, 373, 536, 814, 1228, 1741
KpnI	GGTACC	1 cut(s)	1910
Ksp22I	TGATCA	1 cut(s)	1321
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	6 cut(s)	331, 813, 934, 1255, 2062, 2421
Lsp1109I	GCAGC	8 cut(s)	13, 387, 1116, 1252, 1375, 1462, 1567, 1975
LweI	GCATC	7 cut(s)	1321, 1702, 2248, 2302, 2474, 2515, 2537
MaeI	CTAG	7 cut(s)	1089, 1181, 1356, 1499, 1626, 1857, 2022
MaeII	ACGT	7 cut(s)	171, 256, 1185, 1510, 2449, 2509, 2560
MaeIII	GTNAC	9 cut(s)	97, 252, 289, 438, 606, 709, 1501, 1628, 1653
MbiI	CCGCTC	2 cut(s)	586, 1258
MflI	RGATCY	3 cut(s)	730, 844, 1813
MhlI	GDGCHC	2 cut(s)	93, 1459
MlyI	GAGTC	2 cut(s)	199, 2093
MmeI	TCCRAC	2 cut(s)	1814, 2121
Mph1103I	ATGCAT	2 cut(s)	2263, 2530
MroXI	GAANNNNTTC	2 cut(s)	1216, 2562
MseI	TTAA	7 cut(s)	335, 546, 782, 1475, 1850, 2223, 2283
MslI	CAYNNNNRTG	1 cut(s)	2298
MspA1I	CMGCKG	3 cut(s)	755, 1453, 2181
MspI	CCGG	5 cut(s)	63, 618, 811, 1506, 2419
MspR9I	CCNGG	6 cut(s)	1041, 1430, 1885, 2036, 2404, 2419
MvaI	CCWGG	5 cut(s)	1041, 1430, 1885, 2036, 2404
MvnI	CGCG	2 cut(s)	60, 476
MwoI	GCNNNNNNNGC	9 cut(s)	53, 115, 148, 381, 786, 943, 1135, 1447, 1727
NciI	CCSGG	1 cut(s)	2419
NcoI	CCATGG	2 cut(s)	509, 2587
NdeI	CATATG	2 cut(s)	466, 1060
NheI	GCTAGC	1 cut(s)	1088
NlaIV	GGNNCC	3 cut(s)	885, 1908, 2064
NmeAIII	GCCGAG	2 cut(s)	141, 1747
NmuCI	GTSAC	4 cut(s)	97, 252, 289, 1628
NsbI	TGCGCA	1 cut(s)	1742
NsiI	ATGCAT	2 cut(s)	2263, 2530
NspI	RCATGY	4 cut(s)	404, 919, 1020, 2506
NspV	TTCGAA	1 cut(s)	2333
PagI	TCATGA	1 cut(s)	1344
PciI	ACATGT	1 cut(s)	915
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 2566
PdmI	GAANNNNTTC	2 cut(s)	1216, 2562
PfeI	GAWTC	6 cut(s)	1081, 1378, 1423, 1871, 2192, 2330
PflMI	CCANNNNNTGG	1 cut(s)	2513
PleI	GAGTC	2 cut(s)	199, 2093
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
PpsI	GAGTC	2 cut(s)	199, 2093
Ppu21I	YACGTR	2 cut(s)	257, 2510
PscI	ACATGT	1 cut(s)	915
PsiI	TTATAA	2 cut(s)	2315, 2397
Psp124BI	GAGCTC	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	2449
Psp6I	CCWGG	5 cut(s)	1039, 1428, 1883, 2034, 2402
PspCI	CACGTG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	1361
PspGI	CCWGG	5 cut(s)	1039, 1428, 1883, 2034, 2402
PspN4I	GGNNCC	3 cut(s)	885, 1908, 2064
PspPI	GGNCC	2 cut(s)	260, 1787
PsrI	GAACNNNNNNTAC	2 cut(s)	2550, 2582
PstNI	CAGNNNCTG	2 cut(s)	425, 2108
PsuI	RGATCY	3 cut(s)	730, 844, 1813
PvuII	CAGCTG	2 cut(s)	755, 2181
RsaI	GTAC	9 cut(s)	155, 345, 569, 914, 1513, 1908, 2134, 2388, 2415
RsaNI	GTAC	9 cut(s)	154, 344, 568, 913, 1512, 1907, 2133, 2387, 2414
RseI	CAYNNNNRTG	1 cut(s)	2298
SacI	GAGCTC	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	7 cut(s)	335, 546, 782, 1475, 1850, 2223, 2283
Sau96I	GGNCC	2 cut(s)	260, 1787
SchI	GAGTC	2 cut(s)	199, 2093
ScrFI	CCNGG	6 cut(s)	1041, 1430, 1885, 2036, 2404, 2419
SduI	GDGCHC	2 cut(s)	93, 1459
SfaNI	GCATC	7 cut(s)	1321, 1702, 2248, 2302, 2474, 2515, 2537
SfcI	CTRYAG	1 cut(s)	1190
SfuI	TTCGAA	1 cut(s)	2333
SinI	GGWCC	2 cut(s)	260, 1787
SmiMI	CAYNNNNRTG	1 cut(s)	2298
SmlI	CTYRAG	1 cut(s)	1202
SmoI	CTYRAG	1 cut(s)	1202
SpeI	ACTAGT	1 cut(s)	1856
SspI	AATATT	3 cut(s)	924, 994, 1217
SspMI	CTAG	7 cut(s)	1089, 1181, 1356, 1499, 1626, 1857, 2022
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	6 cut(s)	1039, 1428, 1883, 2034, 2402, 2417
StyI	CCWWGG	3 cut(s)	509, 1761, 2587
TaaI	ACNGT	8 cut(s)	348, 651, 877, 1005, 1399, 1516, 2052, 2202
TaiI	ACGT	7 cut(s)	174, 259, 1188, 1513, 2452, 2512, 2563
TaqI	TCGA	8 cut(s)	126, 447, 483, 834, 1114, 1863, 2333, 2365
TaqII	GACCGA	1 cut(s)	1775
TatI	WGTACW	4 cut(s)	567, 912, 2132, 2386
TauI	GCSGC	3 cut(s)	32, 118, 2480
TfiI	GAWTC	6 cut(s)	1081, 1378, 1423, 1871, 2192, 2330
Tru1I	TTAA	7 cut(s)	335, 546, 782, 1475, 1850, 2223, 2283
Tru9I	TTAA	7 cut(s)	335, 546, 782, 1475, 1850, 2223, 2283
TscAI	CASTG	8 cut(s)	565, 882, 894, 1521, 1743, 2055, 2207, 2235
TseFI	GTSAC	4 cut(s)	97, 252, 289, 1628
TseI	GCWGC	8 cut(s)	26, 375, 1129, 1265, 1388, 1450, 1555, 1988
Tsp45I	GTSAC	4 cut(s)	97, 252, 289, 1628
TspGWI	ACGGA	1 cut(s)	1808
TspRI	CASTG	8 cut(s)	565, 882, 894, 1521, 1743, 2055, 2207, 2235
Van91I	CCANNNNNTGG	1 cut(s)	2513
VpaK11BI	GGWCC	2 cut(s)	260, 1787
XagI	CCTNNNNNAGG	2 cut(s)	738, 1082
XapI	RAATTY	6 cut(s)	338, 1477, 1775, 1895, 1930, 2279
XceI	RCATGY	4 cut(s)	404, 919, 1020, 2506
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1571, 2120
XmiI	GTMKAC	1 cut(s)	2031
XmnI	GAANNNNTTC	2 cut(s)	1216, 2562
XspI	CTAG	7 cut(s)	1089, 1181, 1356, 1499, 1626, 1857, 2022
Zsp2I	ATGCAT	2 cut(s)	2263, 2530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.