Rmu_sc0009646.1_g000012

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009646.1
OG0000330
Physical Location & Seq
Reverse (-)
27227 .. 30373
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009646.1_g000012.1.cds

Sequence Viewer

Length: 1302 bp
atgtctgatatctttggccagggaatatttgttgctgatggagagaaatggaagcagcagaggaagcttgccagtttcgagttttcgacgagagttctaaaggatttcagctgttctattttcagaagaaatggtgctaaattggtcaaagttatttctgagtactctgttgcaaatggagtttttgatatgcaggatttgcttatgagatgtaccttggattcaatattcaaagttgggtttggaatagaactgaattgcttggagggttcaagcaaagaagggatagaatttatgaaggcatttgatgagtcaactgctttgacctattggcgatatgttgatccattctggcaattgaaaaggtttctcaatattggttgtgaggccacccttaaaaggtatgtcaaagtcattcatgattttgtgcaccaacatatcaggagaaagagggaattgctagctgtgacgaaagatggtaatgacaaggaggacatactctcgaggtttctattggagagtgagaagaatccagaggagatgaatgataaatatctaagcgacataattctgaattttatgattgctgggaaagataccagtgcaaacacactgtcatggttcttctacatgctctgcaagcaccctctcatacaagaaaaagttgcacaagaagtgagggatgtaattggtaatcaggaagtagacattgatgcatttgtggagaaaataactgatgcatctcttgaacaacttcattatcttcatgccacactaacagagaccttgaggctataccctgcagttcctgtggatgggagatgtgcagagaaggatgacattcttcctgatggctttagactgaaaaaaggagacggaataaactacatggcatattccatgggtagaatgccttatatttggggacaagatgctgaggatttcagacctgaaagatggctcaacaatggagttttccagcctgaatcaactttcaaatttgtcacatttcatgcaggccctcggatctgtctaggaaaggactttgcttacagacagatgaagatagtaacaacggctcttctttacttcttccgcttcaaattggctgatgaaacaacaagtgtcacctacagaaccatgttcacccttcacatccatgacgccttggccaaagatagtattaaccatgagcttggtttcattactcttgatgacactcccattcatgctgctcaaccttacctagatgacatagcctctgtgtctagagcattaagaagtgcttactccaattcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

433

Amino Acids

49.95

Weight (kDa)

5.93

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 705
AciI CCGC 1 cut(s) 1096
AclWI GGATC 2 cut(s) 338, 1034
AcoI YGGCCR 2 cut(s) 16, 1170
AcsI RAATTY 3 cut(s) 290, 574, 998
AcyI GRCGYC 1 cut(s) 1164
AfaI GTAC 2 cut(s) 164, 214
AfiI CCNNNNNNNGG 2 cut(s) 399, 815
AgsI TTSAA 7 cut(s) 225, 232, 273, 361, 749, 997, 1102
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 4 cut(s) 67, 111, 464, 1195
AluI AGCT 4 cut(s) 67, 111, 464, 1195
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 2 cut(s) 776, 867
Alw44I GTGCAC 1 cut(s) 428
AlwI GGATC 2 cut(s) 338, 1034
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 4 cut(s) 16, 387, 1018, 1170
ApaLI GTGCAC 1 cut(s) 428
ApeKI GCWGC 2 cut(s) 55, 1232
ApoI RAATTY 3 cut(s) 290, 574, 998
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
Asp700I GAANNNNTTC 1 cut(s) 753
AspS9I GGNCC 1 cut(s) 1019
AsuHPI GGTGA 2 cut(s) 1120, 1138
AsuNHI GCTAGC 1 cut(s) 460
AvaI CYCGRG 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 432
BalI TGGCCA 2 cut(s) 18, 1172
Bbv12I GWGCWC 1 cut(s) 432
BbvCI CCTCAGC 1 cut(s) 936
BbvI GCAGC 2 cut(s) 67, 1219
BccI CCATC 5 cut(s) 32, 470, 809, 845, 951
BceAI ACGGC 1 cut(s) 1092
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 776, 867
BfaI CTAG 4 cut(s) 461, 1034, 1247, 1269
BfmI CTRYAG 2 cut(s) 801, 1132
BisI GCNGC 2 cut(s) 56, 1233
BlsI GCNGC 2 cut(s) 57, 1234
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 1019
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 4 cut(s) 703, 727, 749, 922
BmtI GCTAGC 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 936
BpuEI CTTGAG 1 cut(s) 808
BsaBI GATNNNNATC 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 1164
BsaI GGTCTC 1 cut(s) 776
BsaJI CCNNGG 5 cut(s) 19, 216, 900, 1022, 1167
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 815
Bse1I ACTGG 2 cut(s) 72, 600
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 5 cut(s) 19, 216, 900, 1022, 1167
BseGI GGATG 4 cut(s) 688, 820, 841, 1155
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 2 cut(s) 399, 815
BseMII CTCAG 2 cut(s) 150, 927
BseNI ACTGG 2 cut(s) 72, 600
BseRI GAGGAG 1 cut(s) 551
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 2 cut(s) 67, 1219
BseYI CCCAGC 1 cut(s) 587
BsgI GTGCAG 1 cut(s) 846
BshFI GGCC 4 cut(s) 18, 389, 1020, 1172
BsiHKAI GWGCWC 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 502
BslFI GGGAC 1 cut(s) 939
BslI CCNNNNNNNGG 2 cut(s) 399, 815
BsmAI GTCTC 2 cut(s) 776, 867
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 1 cut(s) 939
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 4 cut(s) 18, 389, 1020, 1172
Bso31I GGTCTC 1 cut(s) 776
BsoBI CYCGRG 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 2 cut(s) 343, 1026
Bsp19I CCATGG 1 cut(s) 900
BspACI CCGC 1 cut(s) 1096
BspANI GGCC 4 cut(s) 18, 389, 1020, 1172
BspCNI CTCAG 2 cut(s) 151, 928
BspHI TCATGA 1 cut(s) 418
BspMAI CTGCAG 1 cut(s) 805
BspOI GCTAGC 1 cut(s) 464
BspPI GGATC 2 cut(s) 338, 1034
BspQI GCTCTTC 1 cut(s) 1086
BspTNI GGTCTC 1 cut(s) 776
BsrI ACTGG 2 cut(s) 72, 600
BssECI CCNNGG 5 cut(s) 19, 216, 900, 1022, 1167
BssMI GATC 2 cut(s) 343, 1026
BssNI GRCGYC 1 cut(s) 1164
BssT1I CCWWGG 3 cut(s) 216, 900, 1167
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 615
Bst6I CTCTTC 1 cut(s) 1086
BstACI GRCGYC 1 cut(s) 1164
BstAPI GCANNNNNTGC 1 cut(s) 199
BstC8I GCNNGC 4 cut(s) 69, 462, 641, 1018
BstDEI CTNAG 4 cut(s) 159, 557, 936, 1299
BstDSI CCRYGG 1 cut(s) 900
BstF5I GGATG 4 cut(s) 688, 820, 841, 1155
BstKTI GATC 2 cut(s) 346, 1029
BstMAI GTCTC 2 cut(s) 776, 867
BstMBI GATC 2 cut(s) 343, 1026
BstMWI GCNNNNNNNGC 3 cut(s) 64, 199, 640
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 2 cut(s) 801, 1132
BstSLI GKGCMC 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 67, 1219
BstX2I RGATCY 1 cut(s) 1026
BstXI CCANNNNNNTGG 1 cut(s) 1196
BstYI RGATCY 1 cut(s) 1026
BsuRI GGCC 4 cut(s) 18, 389, 1020, 1172
BtgI CCRYGG 1 cut(s) 900
BtsCI GGATG 4 cut(s) 688, 820, 841, 1155
BtsIMutI CAGTG 2 cut(s) 607, 611
Cac8I GCNNGC 4 cut(s) 69, 462, 641, 1018
CaiI CAGNNNCTG 1 cut(s) 809
CciI TCATGA 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 1019
CseI GACGC 1 cut(s) 1172
Csp6I GTAC 2 cut(s) 163, 213
CviQI GTAC 2 cut(s) 163, 213
DdeI CTNAG 4 cut(s) 159, 557, 936, 1299
DpnI GATC 2 cut(s) 345, 1028
DpnII GATC 2 cut(s) 343, 1026
EaeI YGGCCR 2 cut(s) 16, 1170
Eam1104I CTCTTC 1 cut(s) 1086
EarI CTCTTC 1 cut(s) 1086
Eco130I CCWWGG 3 cut(s) 216, 900, 1167
Eco31I GGTCTC 1 cut(s) 776
Eco32I GATATC 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 1019
EcoRII CCWGG 1 cut(s) 18
EcoRV GATATC 1 cut(s) 10
EcoT14I CCWWGG 3 cut(s) 216, 900, 1167
EcoT22I ATGCAT 2 cut(s) 718, 742
ErhI CCWWGG 3 cut(s) 216, 900, 1167
Esp3I CGTCTC 1 cut(s) 867
FalI AAGNNNNNCTT 2 cut(s) 1270, 1302
FaqI GGGAC 1 cut(s) 939
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 2 cut(s) 56, 1233
FokI GGATG 4 cut(s) 695, 827, 848, 1142
Fsp4HI GCNGC 2 cut(s) 56, 1233
FspBI CTAG 4 cut(s) 461, 1034, 1247, 1269
GluI GCNGC 2 cut(s) 56, 1233
GsaI CCCAGC 1 cut(s) 591
HaeIII GGCC 4 cut(s) 18, 389, 1020, 1172
HgaI GACGC 1 cut(s) 1172
Hin1I GRCGYC 1 cut(s) 1164
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 4 cut(s) 221, 311, 529, 986
HphI GGTGA 2 cut(s) 1120, 1138
Hpy166II GTNNAC 4 cut(s) 315, 430, 706, 1146
Hpy188I TCNGA 6 cut(s) 7, 125, 160, 573, 947, 1026
Hpy188III TCNNGA 9 cut(s) 419, 442, 502, 533, 698, 746, 848, 1211, 1269
Hpy8I GTNNAC 4 cut(s) 315, 430, 706, 1146
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 4 cut(s) 275, 292, 826, 1160
HpyCH4III ACNGT 1 cut(s) 615
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 199, 640
HpyF3I CTNAG 4 cut(s) 159, 557, 936, 1299
Hsp92I GRCGYC 1 cut(s) 1164
Kzo9I GATC 2 cut(s) 343, 1026
LguI GCTCTTC 1 cut(s) 1086
Lsp1109I GCAGC 2 cut(s) 67, 1219
LweI GCATC 4 cut(s) 703, 727, 749, 922
MaeI CTAG 4 cut(s) 461, 1034, 1247, 1269
MaeIII GTNAC 4 cut(s) 466, 1003, 1069, 1126
MalI GATC 2 cut(s) 345, 1028
MboI GATC 2 cut(s) 343, 1026
MboII GAAGA 8 cut(s) 138, 538, 616, 755, 836, 1073, 1075, 1084
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 1 cut(s) 1026
MhlI GDGCHC 1 cut(s) 432
MlsI TGGCCA 2 cut(s) 18, 1172
MluNI TGGCCA 2 cut(s) 18, 1172
MlyI GAGTC 1 cut(s) 320
Mox20I TGGCCA 2 cut(s) 18, 1172
Mph1103I ATGCAT 2 cut(s) 718, 742
MroXI GAANNNNTTC 1 cut(s) 753
MscI TGGCCA 2 cut(s) 18, 1172
MseI TTAA 3 cut(s) 396, 1185, 1277
MslI CAYNNNNRTG 2 cut(s) 616, 1158
Msp20I TGGCCA 2 cut(s) 18, 1172
MspA1I CMGCKG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 915
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 64, 199, 640
NcoI CCATGG 1 cut(s) 900
NdeII GATC 2 cut(s) 343, 1026
NheI GCTAGC 1 cut(s) 460
NmuCI GTSAC 3 cut(s) 466, 1003, 1126
NsiI ATGCAT 2 cut(s) 718, 742
NspI RCATGY 1 cut(s) 634
PaeR7I CTCGAG 1 cut(s) 502
PagI TCATGA 1 cut(s) 418
PciSI GCTCTTC 1 cut(s) 1086
PctI GAATGC 1 cut(s) 915
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 3 cut(s) 221, 529, 986
PkrI GCNGC 2 cut(s) 57, 1234
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 1 cut(s) 18
PspPI GGNCC 1 cut(s) 1019
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 1 cut(s) 809
PsuI RGATCY 1 cut(s) 1026
PvuII CAGCTG 1 cut(s) 111
RsaI GTAC 2 cut(s) 164, 214
RsaNI GTAC 2 cut(s) 163, 213
RseI CAYNNNNRTG 2 cut(s) 616, 1158
SapI GCTCTTC 1 cut(s) 1086
SaqAI TTAA 3 cut(s) 396, 1185, 1277
SatI GCNGC 2 cut(s) 56, 1233
Sau3AI GATC 2 cut(s) 343, 1026
Sau96I GGNCC 1 cut(s) 1019
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 4 cut(s) 703, 727, 749, 922
SfcI CTRYAG 2 cut(s) 801, 1132
Sfr274I CTCGAG 1 cut(s) 502
SlaI CTCGAG 1 cut(s) 502
SmiMI CAYNNNNRTG 2 cut(s) 616, 1158
SmlI CTYRAG 2 cut(s) 502, 787
SmoI CTYRAG 2 cut(s) 502, 787
SsiI CCGC 1 cut(s) 1096
SspI AATATT 3 cut(s) 27, 228, 376
SspMI CTAG 4 cut(s) 461, 1034, 1247, 1269
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 3 cut(s) 216, 900, 1167
TaaI ACNGT 1 cut(s) 615
TaqI TCGA 3 cut(s) 78, 86, 503
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 3 cut(s) 221, 529, 986
Tru1I TTAA 3 cut(s) 396, 1185, 1277
Tru9I TTAA 3 cut(s) 396, 1185, 1277
TscAI CASTG 2 cut(s) 607, 618
TseFI GTSAC 3 cut(s) 466, 1003, 1126
TseI GCWGC 2 cut(s) 55, 1232
Tsp45I GTSAC 3 cut(s) 466, 1003, 1126
TspGWI ACGGA 1 cut(s) 891
TspRI CASTG 2 cut(s) 607, 618
VneI GTGCAC 1 cut(s) 428
XapI RAATTY 3 cut(s) 290, 574, 998
XbaI TCTAGA 1 cut(s) 1268
XceI RCATGY 1 cut(s) 634
XhoI CTCGAG 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 705
XmnI GAANNNNTTC 1 cut(s) 753
XspI CTAG 4 cut(s) 461, 1034, 1247, 1269
ZrmI AGTACT 1 cut(s) 164
Zsp2I ATGCAT 2 cut(s) 718, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.