Rw1G019960

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000330
Physical Location & Seq
Reverse (-)
43247750 .. 43257331
9582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019960.1

Sequence Viewer

Length: 1218 bp
ATGGGTTTGCTGTATATCATCTTCAGGTTCACATTTTCGTTATTCTCTCTGTTCCTCTCCCTTTTCTCTTTTCTCATGCTCAGAATCTTCACAGGCAAGTCCATAAGAAACCAAAACTACCCACCTGTAAACGGCACCATCTTTAATCATCTCTTATACTACAACAAACTATATGACTGTCACAACCAAGTTGCGAGAGAATGCCCAACTCACCGGCTTCTTGCTCTGAACAGCAAGCCACCCACTTATATGTTATATTATATTTTGTCACTTTTCCAATGTGGGATATTTCCTATCCAACAATGTGACCCTCGAAACATTGAGCATTTTCTCAAGACCAACTTTGCTCATTACTCGAAAAGTGACTATAACCAATGTATTATGTCTGAGATTTTGGGACAGGGCATTTTTAGGAAGCTTGCTAGCTTTGAGTTCTCAACAAGGAATCTTGTTATAGTTGTTTTTGAGTTTTTGGATTCCAAAAGGGATTTGCTTATGAGATGTACCCTGGATTCCATATTCAAAGTTGGCTGCTCTAATCCATTCTGGAAGTTGAAAACATTTCTCAATATTGGTTCTGAGGCCACTCTTAAACAGTATGTCAAAGTCGCCCATGATTTTGTGCACCAACTTATCAGGAGAAAGAGGGAACTTCTAGCTGGCAAGAAAGATGGTAAGGATCCAGAGCAAATGAATGACAAATATCCAGGTGATATAATTCTGAATTTTATGATAGCTGGCAAAGATACAAGTGCAAATACACTGATGGAAGAAGTTGCACAAGAAGTGAAGGATGTTGTCAGTATGAAACATGACGCTGACATTGATGAATTTCTTCATGCCACACTAACAGAGACCTTGAGGCTCTACCCTGCAGTTCCTATGAATGGGAGGTTTGCAGAGATAGATGACACTCTTCCTGATGTCTTTAGAGTGAAAAAAGGAGACAGAATAGCTTACATGGCCTATGCCATGGGGAGAATGCCTTACATTTGGGGAGAAGATCCCGAATCACCTTTCAAATTCGTCGCATTTCATGCAGGACCTCGGACCTGTCTAGGGAAGGACTTTGCTTACAGGCAGATTAAGACAGTAGCAATGGCTCTTCTTTGCTTCTTCCGCTTCAAATTGGCTGATGAAACAGGTTATAGGACCATGTTCACCCTTCACATAGATGGCACCCTCCCTATGCTTGCACTTCCAAGGACCACCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

405

Amino Acids

46.91

Weight (kDa)

8.88

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 205 - 386 3.1e-19 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 134, 1178
AciI CCGC 1 cut(s) 1120
AclWI GGATC 3 cut(s) 674, 687, 998
AcsI RAATTY 3 cut(s) 724, 830, 1022
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 3 cut(s) 131, 887, 1059
AgsI TTSAA 4 cut(s) 523, 556, 1021, 1126
AjnI CCWGG 2 cut(s) 507, 706
AluBI AGCT 5 cut(s) 418, 426, 659, 737, 956
AluI AGCT 5 cut(s) 418, 426, 659, 737, 956
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 2 cut(s) 848, 939
Alw44I GTGCAC 1 cut(s) 623
AlwI GGATC 3 cut(s) 674, 687, 998
AoxI GGCC 2 cut(s) 582, 963
ApaLI GTGCAC 1 cut(s) 623
ApeKI GCWGC 1 cut(s) 531
ApoI RAATTY 3 cut(s) 724, 830, 1022
Asp700I GAANNNNTTC 1 cut(s) 834
AspS9I GGNCC 4 cut(s) 1043, 1050, 1152, 1206
AsuHPI GGTGA 4 cut(s) 203, 722, 1005, 1153
AsuNHI GCTAGC 1 cut(s) 422
AvaII GGWCC 4 cut(s) 1043, 1050, 1152, 1206
BaeGI GKGCMC 1 cut(s) 627
BamHI GGATCC 1 cut(s) 679
BanI GGYRCC 2 cut(s) 134, 1178
BarI GAAGNNNNNNTAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 1 cut(s) 518
BccI CCATC 4 cut(s) 146, 665, 760, 1169
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 2 cut(s) 509, 708
BcoDI GTCTC 2 cut(s) 848, 939
BfaI CTAG 3 cut(s) 423, 656, 1058
BfmI CTRYAG 1 cut(s) 873
BisI GCNGC 1 cut(s) 532
BlsI GCNGC 1 cut(s) 533
Bme1390I CCNGG 2 cut(s) 509, 708
Bme18I GGWCC 4 cut(s) 1043, 1050, 1152, 1206
BmgT120I GGNCC 4 cut(s) 1043, 1050, 1152, 1206
BmiI GGNNCC 3 cut(s) 136, 681, 1180
BmrFI CCNGG 2 cut(s) 509, 708
BmtI GCTAGC 1 cut(s) 426
BpuEI CTTGAG 2 cut(s) 317, 880
BsaI GGTCTC 1 cut(s) 848
BsaJI CCNNGG 4 cut(s) 507, 972, 1046, 1202
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 887, 1059
Bse118I RCCGGY 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 1104
BseBI CCWGG 2 cut(s) 509, 708
BseDI CCNNGG 4 cut(s) 507, 972, 1046, 1202
BseGI GGATG 1 cut(s) 799
BseLI CCNNNNNNNGG 3 cut(s) 131, 887, 1059
BseMI GCAATG 1 cut(s) 1104
BseMII CTCAG 3 cut(s) 94, 378, 570
BseSI GKGCMC 1 cut(s) 627
BseXI GCAGC 1 cut(s) 518
BshFI GGCC 2 cut(s) 584, 965
BshNI GGYRCC 2 cut(s) 134, 1178
BsiHKAI GWGCWC 1 cut(s) 627
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 3 cut(s) 131, 887, 1059
BsmAI GTCTC 2 cut(s) 848, 939
BsmFI GGGAC 1 cut(s) 411
BsmI GAATGC 2 cut(s) 206, 987
BsnI GGCC 2 cut(s) 584, 965
Bso31I GGTCTC 1 cut(s) 848
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 2 cut(s) 679, 1003
Bsp19I CCATGG 1 cut(s) 972
BspACI CCGC 1 cut(s) 1120
BspANI GGCC 2 cut(s) 584, 965
BspCNI CTCAG 3 cut(s) 93, 379, 571
BspLI GGNNCC 3 cut(s) 136, 681, 1180
BspMAI CTGCAG 1 cut(s) 877
BspOI GCTAGC 1 cut(s) 426
BspPI GGATC 3 cut(s) 674, 687, 998
BspQI GCTCTTC 1 cut(s) 1110
BspT107I GGYRCC 2 cut(s) 134, 1178
BspTNI GGTCTC 1 cut(s) 848
BsrDI GCAATG 1 cut(s) 1104
BsrFI RCCGGY 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 4 cut(s) 507, 972, 1046, 1202
BssMI GATC 2 cut(s) 679, 1003
BssT1I CCWWGG 2 cut(s) 972, 1202
Bst2UI CCWGG 2 cut(s) 509, 708
Bst4CI ACNGT 3 cut(s) 179, 597, 1093
Bst6I CTCTTC 2 cut(s) 921, 1110
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstC8I GCNNGC 6 cut(s) 236, 420, 424, 661, 739, 1194
BstDEI CTNAG 3 cut(s) 80, 387, 579
BstDSI CCRYGG 1 cut(s) 972
BstF5I GGATG 1 cut(s) 799
BstKTI GATC 2 cut(s) 682, 1006
BstMAI GTCTC 2 cut(s) 848, 939
BstMBI GATC 2 cut(s) 679, 1003
BstMWI GCNNNNNNNGC 3 cut(s) 962, 1037, 1119
BstNI CCWGG 2 cut(s) 509, 708
BstSCI CCNGG 2 cut(s) 507, 706
BstSFI CTRYAG 1 cut(s) 873
BstSLI GKGCMC 1 cut(s) 627
BstV1I GCAGC 1 cut(s) 518
BstX2I RGATCY 2 cut(s) 679, 1003
BstYI RGATCY 2 cut(s) 679, 1003
BsuRI GGCC 2 cut(s) 584, 965
BtgI CCRYGG 1 cut(s) 972
BtsCI GGATG 1 cut(s) 799
BtsIMutI CAGTG 1 cut(s) 761
Cac8I GCNNGC 6 cut(s) 236, 420, 424, 661, 739, 1194
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 4 cut(s) 1043, 1050, 1152, 1206
CseI GACGC 1 cut(s) 824
Csp6I GTAC 1 cut(s) 504
CviAII CATG 8 cut(s) 76, 614, 812, 839, 961, 973, 1037, 1156
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 3 cut(s) 80, 387, 579
DpnI GATC 2 cut(s) 681, 1005
DpnII GATC 2 cut(s) 679, 1003
Eam1104I CTCTTC 2 cut(s) 921, 1110
EarI CTCTTC 2 cut(s) 921, 1110
Eco130I CCWWGG 2 cut(s) 972, 1202
Eco31I GGTCTC 1 cut(s) 848
Eco47I GGWCC 4 cut(s) 1043, 1050, 1152, 1206
Eco57I CTGAAG 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 1043
EcoRII CCWGG 2 cut(s) 507, 706
EcoT14I CCWWGG 2 cut(s) 972, 1202
ErhI CCWWGG 2 cut(s) 972, 1202
FaeI CATG 8 cut(s) 79, 617, 815, 842, 964, 976, 1040, 1159
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 411
FatI CATG 8 cut(s) 75, 613, 811, 838, 960, 972, 1036, 1155
Fnu4HI GCNGC 1 cut(s) 532
FokI GGATG 1 cut(s) 806
Fsp4HI GCNGC 1 cut(s) 532
FspBI CTAG 3 cut(s) 423, 656, 1058
GluI GCNGC 1 cut(s) 532
HaeIII GGCC 2 cut(s) 584, 965
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 824
Hin1II CATG 8 cut(s) 79, 617, 815, 842, 964, 976, 1040, 1159
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 5 cut(s) 84, 445, 476, 512, 1010
HpaII CCGG 1 cut(s) 214
HphI GGTGA 4 cut(s) 203, 722, 1005, 1153
Hpy166II GTNNAC 4 cut(s) 30, 130, 625, 1161
Hpy188I TCNGA 6 cut(s) 83, 228, 388, 580, 723, 1050
Hpy188III TCNNGA 6 cut(s) 334, 547, 637, 683, 920, 1007
Hpy8I GTNNAC 4 cut(s) 30, 130, 625, 1161
Hpy99I CGWCG 1 cut(s) 1031
HpyAV CCTTC 3 cut(s) 784, 1057, 1175
HpyCH4III ACNGT 3 cut(s) 179, 597, 1093
HpyCH4V TGCA 7 cut(s) 625, 755, 779, 875, 899, 1040, 1196
HpyF10VI GCNNNNNNNGC 3 cut(s) 962, 1037, 1119
HpyF3I CTNAG 3 cut(s) 80, 387, 579
Hsp92II CATG 8 cut(s) 79, 617, 815, 842, 964, 976, 1040, 1159
Kzo9I GATC 2 cut(s) 679, 1003
LguI GCTCTTC 1 cut(s) 1110
Lsp1109I GCAGC 1 cut(s) 518
MaeI CTAG 3 cut(s) 423, 656, 1058
MaeIII GTNAC 4 cut(s) 179, 267, 305, 362
MalI GATC 2 cut(s) 681, 1005
MboI GATC 2 cut(s) 679, 1003
MboII GAAGA 8 cut(s) 13, 79, 782, 827, 908, 1013, 1097, 1108
MflI RGATCY 2 cut(s) 679, 1003
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 5 cut(s) 717, 724, 830, 1022, 1127
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 8 cut(s) 65, 321, 574, 639, 855, 885, 1056, 1193
MroXI GAANNNNTTC 1 cut(s) 834
MseI TTAA 3 cut(s) 144, 591, 1086
MslI CAYNNNNRTG 2 cut(s) 248, 1173
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 509, 708
Mva1269I GAATGC 2 cut(s) 206, 987
MvaI CCWGG 2 cut(s) 509, 708
MwoI GCNNNNNNNGC 3 cut(s) 962, 1037, 1119
NcoI CCATGG 1 cut(s) 972
NdeII GATC 2 cut(s) 679, 1003
NheI GCTAGC 1 cut(s) 422
NlaIII CATG 8 cut(s) 79, 617, 815, 842, 964, 976, 1040, 1159
NlaIV GGNNCC 3 cut(s) 136, 681, 1180
NmuCI GTSAC 4 cut(s) 179, 267, 305, 362
PciSI GCTCTTC 1 cut(s) 1110
PctI GAATGC 2 cut(s) 206, 987
PdmI GAANNNNTTC 1 cut(s) 834
PfeI GAWTC 5 cut(s) 84, 445, 476, 512, 1010
PkrI GCNGC 1 cut(s) 533
PpuMI RGGWCCY 1 cut(s) 1043
Psp5II RGGWCCY 1 cut(s) 1043
Psp6I CCWGG 2 cut(s) 507, 706
PspGI CCWGG 2 cut(s) 507, 706
PspN4I GGNNCC 3 cut(s) 136, 681, 1180
PspPI GGNCC 4 cut(s) 1043, 1050, 1152, 1206
PspPPI RGGWCCY 1 cut(s) 1043
PstI CTGCAG 1 cut(s) 877
PsuI RGATCY 2 cut(s) 679, 1003
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
RseI CAYNNNNRTG 2 cut(s) 248, 1173
SapI GCTCTTC 1 cut(s) 1110
SaqAI TTAA 3 cut(s) 144, 591, 1086
SatI GCNGC 1 cut(s) 532
Sau3AI GATC 2 cut(s) 679, 1003
Sau96I GGNCC 4 cut(s) 1043, 1050, 1152, 1206
ScrFI CCNGG 2 cut(s) 509, 708
SduI GDGCHC 1 cut(s) 627
SfcI CTRYAG 1 cut(s) 873
SinI GGWCC 4 cut(s) 1043, 1050, 1152, 1206
SmiMI CAYNNNNRTG 2 cut(s) 248, 1173
SmlI CTYRAG 2 cut(s) 332, 859
SmoI CTYRAG 2 cut(s) 332, 859
Sse9I AATT 5 cut(s) 717, 724, 830, 1022, 1127
SsiI CCGC 1 cut(s) 1120
SspI AATATT 1 cut(s) 571
SspMI CTAG 3 cut(s) 423, 656, 1058
StyD4I CCNGG 2 cut(s) 507, 706
StyI CCWWGG 2 cut(s) 972, 1202
TaaI ACNGT 3 cut(s) 179, 597, 1093
TaqI TCGA 2 cut(s) 313, 356
TasI AATT 5 cut(s) 717, 724, 830, 1022, 1127
TfiI GAWTC 5 cut(s) 84, 445, 476, 512, 1010
Tru1I TTAA 3 cut(s) 144, 591, 1086
Tru9I TTAA 3 cut(s) 144, 591, 1086
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 4 cut(s) 179, 267, 305, 362
TseI GCWGC 1 cut(s) 531
Tsp45I GTSAC 4 cut(s) 179, 267, 305, 362
TspDTI ATGAA 7 cut(s) 707, 821, 827, 843, 899, 1025, 1152
TspRI CASTG 1 cut(s) 768
VneI GTGCAC 1 cut(s) 623
VpaK11BI GGWCC 4 cut(s) 1043, 1050, 1152, 1206
XapI RAATTY 3 cut(s) 724, 830, 1022
XmnI GAANNNNTTC 1 cut(s) 834
XspI CTAG 3 cut(s) 423, 656, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.