Rmu_sc0008688.1_g000006

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008688.1
OG0000330
Physical Location & Seq
Reverse (-)
13199 .. 13582
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008688.1_g000006.1.cds

Sequence Viewer

Length: 384 bp
atggagagcgaaaaggagccagaggaaatgactgatacgtatctaagggatatagctctgaattttatgtttgctggcaaagattccaatggaactacattctcgtggttcttctatatgctgtgcaaaaaccctctcattcaagaaaaggttgcacaagaagtgagggatgtagttggtttgaaccacaaagctaacatcgacgagtttgtggcatatttaactgatgcagctcttgaaaaaatgcattatattcatgcaacactgacagagaccttgaggctataccaaagtcaccggaaacgctctacctgccggcgacccgcgttccggatcgcacaaatccaatcgcggggcgttcgcgatccggatcagaaaacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

127

Amino Acids

14.87

Weight (kDa)

6.9

Isoelectric Point (pI)

65.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000330)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44890 AT2G44890 AT2G45510
fragaria_vesca FvH4_7g12200 FvH4_7g12250 FvH4_7g12281 FvH4_7g12281 FvH4_7g12281 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12282 FvH4_7g12300 FvH4_7g12310
malus_domestica MD02G1200000.v1.1 MD02G1200100.v1.1 MD02G1200300.v1.1 MD02G1200400.v1.1 MD02G1200500.v1.1 MD02G1200600.v1.1 MD02G1200700.v1.1
prunus_persica Prupe.2G148400_v2.0.a1 Prupe.2G148500_v2.0.a1 Prupe.2G148600_v2.0.a1 Prupe.2G148700_v2.0.a1
pyrus_communis pycom02g16390
rosa_chinensis RchiOBHm_Chr1g0350941 RchiOBHm_Chr1g0350951 RchiOBHm_Chr1g0350981 RchiOBHm_Chr1g0350991 RchiOBHm_Chr1g0351001 RchiOBHm_Chr1g0351031 RchiOBHm_Chr1g0351061 RchiOBHm_Chr1g0351071 RchiOBHm_Chr1g0351081 RchiOBHm_Chr1g0351091 RchiOBHm_Chr1g0351101 RchiOBHm_Chr1g0375431 RchiOBHm_Chr2g0142281
rosa_laevigata RLG00000026651 RLG00000028432 RLG00000028433 RLG00000028435 RLG00000028436 RLG00000028437 RLG00000028438 RLG00000028439
rosa_multiflora Rmu_co7992102.1_g000001 Rmu_sc0000429.1_g000085 Rmu_sc0002665.1_g000014 Rmu_sc0002665.1_g000018 Rmu_sc0006087.1_g000001 Rmu_sc0006458.1_g000011 Rmu_sc0008688.1_g000002 Rmu_sc0008688.1_g000006 Rmu_sc0009646.1_g000012 Rmu_sc0032693.1_g000003
rosa_roxburghii Rroxscaffold_4G00304080 Rroxscaffold_4G00304120 Rroxscaffold_4G00304150 Rroxscaffold_4G00304170 Rroxscaffold_4G00304180 Rroxscaffold_4G00304190 Rroxscaffold_4G00304210 Rroxscaffold_4G00304230 Rroxscaffold_4G00304280
rosa_rugosa Rorug01G0075700 Rorug01G0215400 Rorug01G0216000 Rorug01G0216100 Rorug01G0216200 Rorug01G0216300 Rorug01G0216300 Rorug01G0216300 Rorug02G0238800 Rorug04G0006700 Rorug06G0023400
rosa_samantha Rh1AG230300 Rh1AG230400 Rh1AG230700 Rh1AG230800 Rh1BG200100 Rh1BG200200 Rh1BG200600 Rh1DG227900 Rh1DG228000 Rh1DG228200
rosa_wichuraiana Rw0G010880 Rw1G019960 Rw1G019970 Rw1G019990 Rw1G020000 Rw1G020010 Rw1G020040 Rw1G020050 Rw1G020060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 320
AccII CGCG 3 cut(s) 326, 352, 363
AccIII TCCGGA 2 cut(s) 330, 367
AciI CCGC 2 cut(s) 324, 352
AclWI GGATC 3 cut(s) 341, 359, 378
AcsI RAATTY 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 330, 352
AgsI TTSAA 3 cut(s) 143, 184, 239
AluBI AGCT 3 cut(s) 56, 194, 233
AluI AGCT 3 cut(s) 56, 194, 233
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 3 cut(s) 341, 359, 378
Aor13HI TCCGGA 2 cut(s) 330, 367
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 287
BauI CACGAG 1 cut(s) 103
BbvI GCAGC 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 320
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 298
BsaAI YACGTR 1 cut(s) 39
BsaBI GATNNNNATC 2 cut(s) 39, 369
BsaI GGTCTC 1 cut(s) 266
BsaWI WCCGGW 3 cut(s) 297, 330, 367
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 352
Bse118I RCCGGY 1 cut(s) 315
Bse8I GATNNNNATC 2 cut(s) 39, 369
BseAI TCCGGA 2 cut(s) 330, 367
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 2 cut(s) 39, 369
BseLI CCNNNNNNNGG 2 cut(s) 330, 352
BseXI GCAGC 1 cut(s) 242
Bsh1236I CGCG 3 cut(s) 326, 352, 363
BsiSI CCGG 4 cut(s) 298, 316, 331, 368
BslI CCNNNNNNNGG 2 cut(s) 330, 352
BsmAI GTCTC 1 cut(s) 266
Bso31I GGTCTC 1 cut(s) 266
Bsp13I TCCGGA 2 cut(s) 330, 367
Bsp143I GATC 3 cut(s) 333, 364, 370
Bsp68I TCGCGA 1 cut(s) 363
BspACI CCGC 2 cut(s) 324, 352
BspEI TCCGGA 2 cut(s) 330, 367
BspFNI CGCG 3 cut(s) 326, 352, 363
BspLI GGNNCC 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 3 cut(s) 341, 359, 378
BspTNI GGTCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 315
BssMI GATC 3 cut(s) 333, 364, 370
BssSI CACGAG 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 76, 317
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 3 cut(s) 326, 352, 363
BstKTI GATC 3 cut(s) 336, 367, 373
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 3 cut(s) 333, 364, 370
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstSNI TACGTA 1 cut(s) 39
BstUI CGCG 3 cut(s) 326, 352, 363
BstV1I GCAGC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 263
BtuMI TCGCGA 1 cut(s) 363
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 76, 317
Cfr10I RCCGGY 1 cut(s) 315
CviAII CATG 1 cut(s) 257
CviJI RGCY 5 cut(s) 19, 56, 194, 233, 283
CviKI_1 RGCY 5 cut(s) 19, 56, 194, 233, 283
DdeI CTNAG 1 cut(s) 44
DpnI GATC 3 cut(s) 335, 366, 372
DpnII GATC 3 cut(s) 333, 364, 370
Eco105I TACGTA 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 249
FaeI CATG 1 cut(s) 260
FaiI YATR 9 cut(s) 53, 68, 117, 119, 217, 252, 258, 286, 382
FatI CATG 1 cut(s) 256
FauI CCCGC 2 cut(s) 331, 345
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 231
HapII CCGG 4 cut(s) 298, 316, 331, 368
Hin1II CATG 1 cut(s) 260
HinfI GANTC 1 cut(s) 83
HpaII CCGG 4 cut(s) 298, 316, 331, 368
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 2 cut(s) 60, 375
Hpy188III TCNNGA 5 cut(s) 143, 236, 331, 362, 368
Hpy99I CGWCG 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 5 cut(s) 126, 155, 230, 247, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 1 cut(s) 260
Kpn2I TCCGGA 2 cut(s) 330, 367
KroI GCCGGC 1 cut(s) 315
KroNI GCCGGC 1 cut(s) 317
Kzo9I GATC 3 cut(s) 333, 364, 370
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 33, 60, 311, 325, 329, 344
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 1 cut(s) 217
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 293
MalI GATC 3 cut(s) 335, 366, 372
MboI GATC 3 cut(s) 333, 364, 370
MboII GAAGA 1 cut(s) 103
MluCI AATT 1 cut(s) 61
MnlI CCTC 4 cut(s) 16, 144, 159, 273
Mph1103I ATGCAT 1 cut(s) 249
MroI TCCGGA 2 cut(s) 330, 367
MroNI GCCGGC 1 cut(s) 315
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 103
MspI CCGG 4 cut(s) 298, 316, 331, 368
MvnI CGCG 3 cut(s) 326, 352, 363
MwoI GCNNNNNNNGC 1 cut(s) 312
NaeI GCCGGC 1 cut(s) 317
NdeII GATC 3 cut(s) 333, 364, 370
NgoMIV GCCGGC 1 cut(s) 315
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 293
NruI TCGCGA 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 249
PdiI GCCGGC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 18
RruI TCGCGA 1 cut(s) 363
RseI CAYNNNNRTG 1 cut(s) 103
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 3 cut(s) 333, 364, 370
SetI ASST 7 cut(s) 41, 58, 153, 196, 235, 278, 314
SfaNI GCATC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SnaBI TACGTA 1 cut(s) 39
Sse9I AATT 1 cut(s) 61
SsiI CCGC 2 cut(s) 324, 352
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 61
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 1 cut(s) 270
XapI RAATTY 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.